Pacific Symposium on Biocomputing 2008 :: Kohala Coast, Hawaii, USA, 4-8 January 2008 /
Gespeichert in:
| Körperschaft: | |
|---|---|
| Weitere Verfasser: | |
| Format: | Elektronisch Tagungsbericht E-Book |
| Sprache: | English |
| Veröffentlicht: |
Hackensack, N.J. :
World Scientific,
©2008.
|
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Beschreibung: | 1 online resource (xviii, 663 pages) : illustrations (some color) |
| Bibliographie: | Includes bibliographical references. |
| ISBN: | 9789812776136 9812776133 |
Internformat
MARC
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| 111 | 2 | |a Pacific Symposium on Biocomputing |n (13th : |d 2008 : |c Kohala Coast, Hawaii) | |
| 245 | 1 | 0 | |a Pacific Symposium on Biocomputing 2008 : |b Kohala Coast, Hawaii, USA, 4-8 January 2008 / |c edited by Russ B. Altman [and others]. |
| 246 | 3 | 0 | |a Biocomputing 2008 |
| 260 | |a Hackensack, N.J. : |b World Scientific, |c ©2008. | ||
| 300 | |a 1 online resource (xviii, 663 pages) : |b illustrations (some color) | ||
| 336 | |a text |b txt |2 rdacontent | ||
| 337 | |a computer |b c |2 rdamedia | ||
| 338 | |a online resource |b cr |2 rdacarrier | ||
| 504 | |a Includes bibliographical references. | ||
| 588 | 0 | |a Print version record. | |
| 505 | 0 | |a Beyond gap models: reconstructing alignments and phylogenies under genomic-scale events. Session introduction / Michael Brudno [and others] FRESCO: flexible alignment with rectangle scoring schemes / A.V Dalca and M. Brudno. Local reliability measures from sets of co-optimal multiple sequence alignments / Giddy Landan and Dan Graur. The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analysis / S. Nelesen. Sensitivity analysis for reversal distance and breakpoint reuse in genome rearrangements / Amit U. Sinha and Jaroslaw Meller -- Computational challenges in the study of small regulatory RNAs. Session introduction / Doron Betel, Christina Leslie, and Nikolaus Rajewsky. Comparing sequence and expression for predicting microRNA targets using GenMiR3 / J.C. Huang, B.J. Frey, and Q.D. Morris. Analysis of microRNA-target interactions by a target structure based hybridization model / Dang Long, Chi Yu Chan, and Ye Ding. A probabilistic model for small RNA flowgram matching / Vladimir Vacic [and others] -- Computational tools for next-generation sequencing applications. Session introduction / Francisco M. De La Vega, Gabor T. Marth, and Granger Sutton. TRELLIS+: an effective approach for indexing genome-scale sequences using suffix trees / Benjarath Phoophakdee and Mohammed J. Zaki. Pash 2.0: scaleable sequence anchoring for next-generation sequencing technologies / Cristian Coalfa and Aleksandar Milosavljevic. Population sequencing using short reads: HIV as a case study / Vladimir Jojic, Tomer Hertz, and Nebojsa Jojic. Analysis of large-scale sequencing of small RNAs / A.J. Olson -- Knowledge-driven analysis and data integration for high-throughput biological data. Session introduction / Michael E Ochs, John Quackenbush, and Ramana Davuluri. SGDI: system for genomic data integration / V.J. Carey. Annotating pathways of interaction networks / Jayesh Pandey [and others] Integrating microarray and proteomics data to predict the response of cetuximab in patients with rectal cancer / Anneleen Daeman [and others] A Bayesian framework for data and hypotheses driven fusion of high throughput data: application to mouse organogenesis / Mudhuchhanda Bhattacharjee, Colin Pritchard, and Peter Nelson. Gathering the gold dust: methods for assessing the aggregate impact of small effect genes in genomic scans / Michael A. Province and Ingrid B. Borecki. Multi-scale correlations in continuous genomic data / R.E. Thurman, W S. Noble, and J.A. Stamatoyannopoulos. Analysis of MALDI-TOF spectrometry data for detection of glycan biomarkers / Habtom W Ressom [and others] -- Molecular bioinformatics for disease: protein interactions and phenomics. Session introduction / Yves A. Lussiel [and others] System-wide peripheral biomarker discovery using information theory / Gil Alterovitz [and others] Novel integration of hospital electronic medical records and gene expression measurements to identify genetic markers of maturation / David P. Chen [and others] Networking pathways unveils association between obesity and non-insulin dependent diabetes mellitus / Haiyan Hu and Xiaoman Li. Extracting gene expression profiles common to colon and pancreatic adenocarcinoma using simultaneous nonnegative matrix factorization / Liviu Badea. Integration of microarray and textual data improves the prognosis prediction of breast, lung and ovarian cancer patients / 0. Gevaert, S. Van Vooren, and B. De Moor. Mining metabolic networks for optimal drug targets / Padmavati Sridhar [and others] Global alignment of multiple protein interaction networks / Rohit Singh, Jinbo Xu, and Bonnie Berger. Predicting DNA methylation susceptibility using CpG flanking sequences / S. Kim [and others] -- Multiscale modeling and simulation session: from molecules to cells to organisms? Session introduction / Jung-Chi Liao [and others] Combining molecular dynamics and machine learning to improve protein function recognition / Dariya S. Glazer, Randall J. Radmel, and Russ B. Altman. Prediction of structure of G-protein coupled receptors and of bound ligands with applications for drug design / Youyong Li and William A. Goddard III. Markov chain models of coupled intracellular calcium channels: Kronecker structured representations and benchmark stationary distribution calculations / Hilary DeRemigio [and others] Spatially-compressed cardiac myofilament models generate hysteresis that is not found in real muscle / John Jeremy Rice [and others] Modeling ventricular interaction: a multiscale approach from sarcomere mechanics to cardiovascular system hemodynamics / Joost Lumens [and others] Sub-micrometer anatomical models of the sarcolemma of cardiac myocytes based on confocal imaging / Frank B. Sachse [and others] Efficient multiscale simulation of circadian rhythms using automated phase macromodelling techniques / Shatam Agarwal and Jaijeet Roychowdhury. Integration of multi-scale biosimulation models via light-weight semantics / John H. Gennari [and others] Comparisons of protein family dynamics / A.J. Ruder and Joshua T. Harrell. Protein-nucleic acid interactions: interactions: integrating structure, sequence, and function. Session introduction / Martha L. Bulyk [and others] Functional trends in structural classes of the DNA binding domains on regulatory transcription factors / Rachel Patton McCord and Martha L. Bulyk. Using DNA duplex stability information for transcription factor binding site discovery / Raluca Gordân and Alexander J. Hartemink. A parametric joint model of DNA-protein binding, gene expression and DNA sequence data to detect target genes of a transcription factor / Wei Pan, Peng Wei, and Arkady Khodursky. An analysis of information content present in protein-DNA interactions / Chris KaufSman and George Karypis. Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast / Richard W Lusk and Michael B. Eisen. Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches / Jae-Hyung Lee [and others] -- Tiling microarray data analysis methods and algorithms. Session introduction / Srinka Ghosh and Antonio Piccolboni. CMARRT: a tool for the analysis of ChIP-chip data from tiling arrays by incorporating the correlation structure / Pei Fen Kuan, Hyonho Chun, and Sűndűz Keleş. Transcript normalization and segmentation of tiling array data / Georg Zellel [and others] GSE: a comprehensive database system for the representation, retrieval, and analysis of microarray data / Timothy Danford, Alex Rolfe, and David Gifford -- Translating biology: text mining tools that work. Session introduction / K. Bretonnel Cohen [and others] Assisted curation: does text mining really help? / Beatrice Alex [and others] Evidence for showing geneprotein name suggestions in bioscience literature search interfaces/ Anna Divoli, Marti A. Hearst, and Michael A. Wooldridge. Enabling integrative genomic analysis of high-impact human diseases through text mining / Joel Dudley and Atul J. Butte. Information needs and the role of text mining in drug development / Phoebe M. Roberts and William S. Hayes. EpiLoc: a (working) text-based system for predicting protein subcellular location / Scott Brady and Hagit Shatkay. Filling the gaps between tools and users: a tool comparator, using protein-protein interactions as an example / Yoshinobu Kano [and others] Comparing usability of matching techniques for normalising biomedical named entities / Xinglong Wang and Michael Matthews. Intrinsic evaluation of text mining tools may not predict performance on realistic tasks / J. Gregory Caporaso [and others] BANNER: An executable survey of advances in biomedical named entity recognition / Robert Leaman and Graciela Gonzalez. | |
| 650 | 0 | |a Biology |x Mathematical models |v Congresses. | |
| 650 | 0 | |a Biology |x Computer simulation |v Congresses. | |
| 650 | 0 | |a Molecular biology |x Mathematical models |v Congresses. | |
| 650 | 0 | |a Molecular biology |x Computer simulation |v Congresses. | |
| 650 | 6 | |a Biologie |x Modèles mathématiques |v Congrès. | |
| 650 | 6 | |a Biologie |x Simulation par ordinateur |v Congrès. | |
| 650 | 6 | |a Biologie moléculaire |x Modèles mathématiques |v Congrès. | |
| 650 | 6 | |a Biologie moléculaire |x Simulation par ordinateur |v Congrès. | |
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| 650 | 7 | |a Molecular biology |x Computer simulation |2 fast | |
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| 655 | 7 | |a Conference papers and proceedings |2 fast | |
| 700 | 1 | |a Altman, Russ. |0 http://id.loc.gov/authorities/names/n95004322 | |
| 758 | |i has work: |a Pacific Symposium on Biocomputing 2008 (Text) |1 https://id.oclc.org/worldcat/entity/E39PCGwmMF49BgMHVmgVTb66PP |4 https://id.oclc.org/worldcat/ontology/hasWork | ||
| 776 | 0 | 8 | |i Print version: |a Pacific Symposium on Biocomputing (13th : 2008 : Kohala Coast, Hawaii). |t Pacific Symposium on Biocomputing 2008. |d Hackensack, N.J. : World Scientific, ©2008 |z 9789812776082 |z 9812776087 |w (OCoLC)227015347 |
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Datensatz im Suchindex
| DE-BY-FWS_katkey | ZDB-4-EBA-ocn261500213 |
|---|---|
| _version_ | 1816881678812971009 |
| adam_text | |
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| author2 | Altman, Russ |
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| author_corporate | Pacific Symposium on Biocomputing Kohala Coast, Hawaii |
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| author_facet | Altman, Russ Pacific Symposium on Biocomputing Kohala Coast, Hawaii |
| author_sort | Pacific Symposium on Biocomputing Kohala Coast, Hawaii |
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| collection | ZDB-4-EBA |
| contents | Beyond gap models: reconstructing alignments and phylogenies under genomic-scale events. Session introduction / Michael Brudno [and others] FRESCO: flexible alignment with rectangle scoring schemes / A.V Dalca and M. Brudno. Local reliability measures from sets of co-optimal multiple sequence alignments / Giddy Landan and Dan Graur. The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analysis / S. Nelesen. Sensitivity analysis for reversal distance and breakpoint reuse in genome rearrangements / Amit U. Sinha and Jaroslaw Meller -- Computational challenges in the study of small regulatory RNAs. Session introduction / Doron Betel, Christina Leslie, and Nikolaus Rajewsky. Comparing sequence and expression for predicting microRNA targets using GenMiR3 / J.C. Huang, B.J. Frey, and Q.D. Morris. Analysis of microRNA-target interactions by a target structure based hybridization model / Dang Long, Chi Yu Chan, and Ye Ding. A probabilistic model for small RNA flowgram matching / Vladimir Vacic [and others] -- Computational tools for next-generation sequencing applications. Session introduction / Francisco M. De La Vega, Gabor T. Marth, and Granger Sutton. TRELLIS+: an effective approach for indexing genome-scale sequences using suffix trees / Benjarath Phoophakdee and Mohammed J. Zaki. Pash 2.0: scaleable sequence anchoring for next-generation sequencing technologies / Cristian Coalfa and Aleksandar Milosavljevic. Population sequencing using short reads: HIV as a case study / Vladimir Jojic, Tomer Hertz, and Nebojsa Jojic. Analysis of large-scale sequencing of small RNAs / A.J. Olson -- Knowledge-driven analysis and data integration for high-throughput biological data. Session introduction / Michael E Ochs, John Quackenbush, and Ramana Davuluri. SGDI: system for genomic data integration / V.J. Carey. Annotating pathways of interaction networks / Jayesh Pandey [and others] Integrating microarray and proteomics data to predict the response of cetuximab in patients with rectal cancer / Anneleen Daeman [and others] A Bayesian framework for data and hypotheses driven fusion of high throughput data: application to mouse organogenesis / Mudhuchhanda Bhattacharjee, Colin Pritchard, and Peter Nelson. Gathering the gold dust: methods for assessing the aggregate impact of small effect genes in genomic scans / Michael A. Province and Ingrid B. Borecki. Multi-scale correlations in continuous genomic data / R.E. Thurman, W S. Noble, and J.A. Stamatoyannopoulos. Analysis of MALDI-TOF spectrometry data for detection of glycan biomarkers / Habtom W Ressom [and others] -- Molecular bioinformatics for disease: protein interactions and phenomics. Session introduction / Yves A. Lussiel [and others] System-wide peripheral biomarker discovery using information theory / Gil Alterovitz [and others] Novel integration of hospital electronic medical records and gene expression measurements to identify genetic markers of maturation / David P. Chen [and others] Networking pathways unveils association between obesity and non-insulin dependent diabetes mellitus / Haiyan Hu and Xiaoman Li. Extracting gene expression profiles common to colon and pancreatic adenocarcinoma using simultaneous nonnegative matrix factorization / Liviu Badea. Integration of microarray and textual data improves the prognosis prediction of breast, lung and ovarian cancer patients / 0. Gevaert, S. Van Vooren, and B. De Moor. Mining metabolic networks for optimal drug targets / Padmavati Sridhar [and others] Global alignment of multiple protein interaction networks / Rohit Singh, Jinbo Xu, and Bonnie Berger. Predicting DNA methylation susceptibility using CpG flanking sequences / S. Kim [and others] -- Multiscale modeling and simulation session: from molecules to cells to organisms? Session introduction / Jung-Chi Liao [and others] Combining molecular dynamics and machine learning to improve protein function recognition / Dariya S. Glazer, Randall J. Radmel, and Russ B. Altman. Prediction of structure of G-protein coupled receptors and of bound ligands with applications for drug design / Youyong Li and William A. Goddard III. Markov chain models of coupled intracellular calcium channels: Kronecker structured representations and benchmark stationary distribution calculations / Hilary DeRemigio [and others] Spatially-compressed cardiac myofilament models generate hysteresis that is not found in real muscle / John Jeremy Rice [and others] Modeling ventricular interaction: a multiscale approach from sarcomere mechanics to cardiovascular system hemodynamics / Joost Lumens [and others] Sub-micrometer anatomical models of the sarcolemma of cardiac myocytes based on confocal imaging / Frank B. Sachse [and others] Efficient multiscale simulation of circadian rhythms using automated phase macromodelling techniques / Shatam Agarwal and Jaijeet Roychowdhury. Integration of multi-scale biosimulation models via light-weight semantics / John H. Gennari [and others] Comparisons of protein family dynamics / A.J. Ruder and Joshua T. Harrell. Protein-nucleic acid interactions: interactions: integrating structure, sequence, and function. Session introduction / Martha L. Bulyk [and others] Functional trends in structural classes of the DNA binding domains on regulatory transcription factors / Rachel Patton McCord and Martha L. Bulyk. Using DNA duplex stability information for transcription factor binding site discovery / Raluca Gordân and Alexander J. Hartemink. A parametric joint model of DNA-protein binding, gene expression and DNA sequence data to detect target genes of a transcription factor / Wei Pan, Peng Wei, and Arkady Khodursky. An analysis of information content present in protein-DNA interactions / Chris KaufSman and George Karypis. Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast / Richard W Lusk and Michael B. Eisen. Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches / Jae-Hyung Lee [and others] -- Tiling microarray data analysis methods and algorithms. Session introduction / Srinka Ghosh and Antonio Piccolboni. CMARRT: a tool for the analysis of ChIP-chip data from tiling arrays by incorporating the correlation structure / Pei Fen Kuan, Hyonho Chun, and Sűndűz Keleş. Transcript normalization and segmentation of tiling array data / Georg Zellel [and others] GSE: a comprehensive database system for the representation, retrieval, and analysis of microarray data / Timothy Danford, Alex Rolfe, and David Gifford -- Translating biology: text mining tools that work. Session introduction / K. Bretonnel Cohen [and others] Assisted curation: does text mining really help? / Beatrice Alex [and others] Evidence for showing geneprotein name suggestions in bioscience literature search interfaces/ Anna Divoli, Marti A. Hearst, and Michael A. Wooldridge. Enabling integrative genomic analysis of high-impact human diseases through text mining / Joel Dudley and Atul J. Butte. Information needs and the role of text mining in drug development / Phoebe M. Roberts and William S. Hayes. EpiLoc: a (working) text-based system for predicting protein subcellular location / Scott Brady and Hagit Shatkay. Filling the gaps between tools and users: a tool comparator, using protein-protein interactions as an example / Yoshinobu Kano [and others] Comparing usability of matching techniques for normalising biomedical named entities / Xinglong Wang and Michael Matthews. Intrinsic evaluation of text mining tools may not predict performance on realistic tasks / J. Gregory Caporaso [and others] BANNER: An executable survey of advances in biomedical named entity recognition / Robert Leaman and Graciela Gonzalez. |
| ctrlnum | (OCoLC)261500213 |
| dewey-full | 572.8 |
| dewey-hundreds | 500 - Natural sciences and mathematics |
| dewey-ones | 572 - Biochemistry |
| dewey-raw | 572.8 |
| dewey-search | 572.8 |
| dewey-sort | 3572.8 |
| dewey-tens | 570 - Biology |
| discipline | Biologie |
| format | Electronic Conference Proceeding eBook |
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Session introduction / Michael Brudno [and others] FRESCO: flexible alignment with rectangle scoring schemes / A.V Dalca and M. Brudno. Local reliability measures from sets of co-optimal multiple sequence alignments / Giddy Landan and Dan Graur. The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analysis / S. Nelesen. Sensitivity analysis for reversal distance and breakpoint reuse in genome rearrangements / Amit U. Sinha and Jaroslaw Meller -- Computational challenges in the study of small regulatory RNAs. Session introduction / Doron Betel, Christina Leslie, and Nikolaus Rajewsky. Comparing sequence and expression for predicting microRNA targets using GenMiR3 / J.C. Huang, B.J. Frey, and Q.D. Morris. Analysis of microRNA-target interactions by a target structure based hybridization model / Dang Long, Chi Yu Chan, and Ye Ding. A probabilistic model for small RNA flowgram matching / Vladimir Vacic [and others] -- Computational tools for next-generation sequencing applications. Session introduction / Francisco M. De La Vega, Gabor T. Marth, and Granger Sutton. TRELLIS+: an effective approach for indexing genome-scale sequences using suffix trees / Benjarath Phoophakdee and Mohammed J. Zaki. Pash 2.0: scaleable sequence anchoring for next-generation sequencing technologies / Cristian Coalfa and Aleksandar Milosavljevic. Population sequencing using short reads: HIV as a case study / Vladimir Jojic, Tomer Hertz, and Nebojsa Jojic. Analysis of large-scale sequencing of small RNAs / A.J. Olson -- Knowledge-driven analysis and data integration for high-throughput biological data. Session introduction / Michael E Ochs, John Quackenbush, and Ramana Davuluri. SGDI: system for genomic data integration / V.J. Carey. Annotating pathways of interaction networks / Jayesh Pandey [and others] Integrating microarray and proteomics data to predict the response of cetuximab in patients with rectal cancer / Anneleen Daeman [and others] A Bayesian framework for data and hypotheses driven fusion of high throughput data: application to mouse organogenesis / Mudhuchhanda Bhattacharjee, Colin Pritchard, and Peter Nelson. Gathering the gold dust: methods for assessing the aggregate impact of small effect genes in genomic scans / Michael A. Province and Ingrid B. Borecki. Multi-scale correlations in continuous genomic data / R.E. Thurman, W S. Noble, and J.A. Stamatoyannopoulos. Analysis of MALDI-TOF spectrometry data for detection of glycan biomarkers / Habtom W Ressom [and others] -- Molecular bioinformatics for disease: protein interactions and phenomics. Session introduction / Yves A. Lussiel [and others] System-wide peripheral biomarker discovery using information theory / Gil Alterovitz [and others] Novel integration of hospital electronic medical records and gene expression measurements to identify genetic markers of maturation / David P. Chen [and others] Networking pathways unveils association between obesity and non-insulin dependent diabetes mellitus / Haiyan Hu and Xiaoman Li. Extracting gene expression profiles common to colon and pancreatic adenocarcinoma using simultaneous nonnegative matrix factorization / Liviu Badea. Integration of microarray and textual data improves the prognosis prediction of breast, lung and ovarian cancer patients / 0. Gevaert, S. Van Vooren, and B. De Moor. Mining metabolic networks for optimal drug targets / Padmavati Sridhar [and others] Global alignment of multiple protein interaction networks / Rohit Singh, Jinbo Xu, and Bonnie Berger. Predicting DNA methylation susceptibility using CpG flanking sequences / S. Kim [and others] -- Multiscale modeling and simulation session: from molecules to cells to organisms? Session introduction / Jung-Chi Liao [and others] Combining molecular dynamics and machine learning to improve protein function recognition / Dariya S. Glazer, Randall J. Radmel, and Russ B. Altman. Prediction of structure of G-protein coupled receptors and of bound ligands with applications for drug design / Youyong Li and William A. Goddard III. Markov chain models of coupled intracellular calcium channels: Kronecker structured representations and benchmark stationary distribution calculations / Hilary DeRemigio [and others] Spatially-compressed cardiac myofilament models generate hysteresis that is not found in real muscle / John Jeremy Rice [and others] Modeling ventricular interaction: a multiscale approach from sarcomere mechanics to cardiovascular system hemodynamics / Joost Lumens [and others] Sub-micrometer anatomical models of the sarcolemma of cardiac myocytes based on confocal imaging / Frank B. Sachse [and others] Efficient multiscale simulation of circadian rhythms using automated phase macromodelling techniques / Shatam Agarwal and Jaijeet Roychowdhury. Integration of multi-scale biosimulation models via light-weight semantics / John H. Gennari [and others] Comparisons of protein family dynamics / A.J. Ruder and Joshua T. Harrell. Protein-nucleic acid interactions: interactions: integrating structure, sequence, and function. Session introduction / Martha L. Bulyk [and others] Functional trends in structural classes of the DNA binding domains on regulatory transcription factors / Rachel Patton McCord and Martha L. Bulyk. Using DNA duplex stability information for transcription factor binding site discovery / Raluca Gordân and Alexander J. Hartemink. A parametric joint model of DNA-protein binding, gene expression and DNA sequence data to detect target genes of a transcription factor / Wei Pan, Peng Wei, and Arkady Khodursky. An analysis of information content present in protein-DNA interactions / Chris KaufSman and George Karypis. Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast / Richard W Lusk and Michael B. Eisen. Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches / Jae-Hyung Lee [and others] -- Tiling microarray data analysis methods and algorithms. Session introduction / Srinka Ghosh and Antonio Piccolboni. CMARRT: a tool for the analysis of ChIP-chip data from tiling arrays by incorporating the correlation structure / Pei Fen Kuan, Hyonho Chun, and Sűndűz Keleş. Transcript normalization and segmentation of tiling array data / Georg Zellel [and others] GSE: a comprehensive database system for the representation, retrieval, and analysis of microarray data / Timothy Danford, Alex Rolfe, and David Gifford -- Translating biology: text mining tools that work. Session introduction / K. Bretonnel Cohen [and others] Assisted curation: does text mining really help? / Beatrice Alex [and others] Evidence for showing geneprotein name suggestions in bioscience literature search interfaces/ Anna Divoli, Marti A. Hearst, and Michael A. Wooldridge. Enabling integrative genomic analysis of high-impact human diseases through text mining / Joel Dudley and Atul J. Butte. Information needs and the role of text mining in drug development / Phoebe M. Roberts and William S. Hayes. EpiLoc: a (working) text-based system for predicting protein subcellular location / Scott Brady and Hagit Shatkay. Filling the gaps between tools and users: a tool comparator, using protein-protein interactions as an example / Yoshinobu Kano [and others] Comparing usability of matching techniques for normalising biomedical named entities / Xinglong Wang and Michael Matthews. Intrinsic evaluation of text mining tools may not predict performance on realistic tasks / J. 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| genre | Conference papers and proceedings fast |
| genre_facet | Conference papers and proceedings |
| id | ZDB-4-EBA-ocn261500213 |
| illustrated | Illustrated |
| indexdate | 2024-11-27T13:16:32Z |
| institution | BVB |
| isbn | 9789812776136 9812776133 |
| language | English |
| oclc_num | 261500213 |
| open_access_boolean | |
| owner | MAIN DE-863 DE-BY-FWS |
| owner_facet | MAIN DE-863 DE-BY-FWS |
| physical | 1 online resource (xviii, 663 pages) : illustrations (some color) |
| psigel | ZDB-4-EBA |
| publishDate | 2008 |
| publishDateSearch | 2008 |
| publishDateSort | 2008 |
| publisher | World Scientific, |
| record_format | marc |
| spelling | Pacific Symposium on Biocomputing (13th : 2008 : Kohala Coast, Hawaii) Pacific Symposium on Biocomputing 2008 : Kohala Coast, Hawaii, USA, 4-8 January 2008 / edited by Russ B. Altman [and others]. Biocomputing 2008 Hackensack, N.J. : World Scientific, ©2008. 1 online resource (xviii, 663 pages) : illustrations (some color) text txt rdacontent computer c rdamedia online resource cr rdacarrier Includes bibliographical references. Print version record. Beyond gap models: reconstructing alignments and phylogenies under genomic-scale events. Session introduction / Michael Brudno [and others] FRESCO: flexible alignment with rectangle scoring schemes / A.V Dalca and M. Brudno. Local reliability measures from sets of co-optimal multiple sequence alignments / Giddy Landan and Dan Graur. The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analysis / S. Nelesen. Sensitivity analysis for reversal distance and breakpoint reuse in genome rearrangements / Amit U. Sinha and Jaroslaw Meller -- Computational challenges in the study of small regulatory RNAs. Session introduction / Doron Betel, Christina Leslie, and Nikolaus Rajewsky. Comparing sequence and expression for predicting microRNA targets using GenMiR3 / J.C. Huang, B.J. Frey, and Q.D. Morris. Analysis of microRNA-target interactions by a target structure based hybridization model / Dang Long, Chi Yu Chan, and Ye Ding. A probabilistic model for small RNA flowgram matching / Vladimir Vacic [and others] -- Computational tools for next-generation sequencing applications. Session introduction / Francisco M. De La Vega, Gabor T. Marth, and Granger Sutton. TRELLIS+: an effective approach for indexing genome-scale sequences using suffix trees / Benjarath Phoophakdee and Mohammed J. Zaki. Pash 2.0: scaleable sequence anchoring for next-generation sequencing technologies / Cristian Coalfa and Aleksandar Milosavljevic. Population sequencing using short reads: HIV as a case study / Vladimir Jojic, Tomer Hertz, and Nebojsa Jojic. Analysis of large-scale sequencing of small RNAs / A.J. Olson -- Knowledge-driven analysis and data integration for high-throughput biological data. Session introduction / Michael E Ochs, John Quackenbush, and Ramana Davuluri. SGDI: system for genomic data integration / V.J. Carey. Annotating pathways of interaction networks / Jayesh Pandey [and others] Integrating microarray and proteomics data to predict the response of cetuximab in patients with rectal cancer / Anneleen Daeman [and others] A Bayesian framework for data and hypotheses driven fusion of high throughput data: application to mouse organogenesis / Mudhuchhanda Bhattacharjee, Colin Pritchard, and Peter Nelson. Gathering the gold dust: methods for assessing the aggregate impact of small effect genes in genomic scans / Michael A. Province and Ingrid B. Borecki. Multi-scale correlations in continuous genomic data / R.E. Thurman, W S. Noble, and J.A. Stamatoyannopoulos. Analysis of MALDI-TOF spectrometry data for detection of glycan biomarkers / Habtom W Ressom [and others] -- Molecular bioinformatics for disease: protein interactions and phenomics. Session introduction / Yves A. Lussiel [and others] System-wide peripheral biomarker discovery using information theory / Gil Alterovitz [and others] Novel integration of hospital electronic medical records and gene expression measurements to identify genetic markers of maturation / David P. Chen [and others] Networking pathways unveils association between obesity and non-insulin dependent diabetes mellitus / Haiyan Hu and Xiaoman Li. Extracting gene expression profiles common to colon and pancreatic adenocarcinoma using simultaneous nonnegative matrix factorization / Liviu Badea. Integration of microarray and textual data improves the prognosis prediction of breast, lung and ovarian cancer patients / 0. Gevaert, S. Van Vooren, and B. De Moor. Mining metabolic networks for optimal drug targets / Padmavati Sridhar [and others] Global alignment of multiple protein interaction networks / Rohit Singh, Jinbo Xu, and Bonnie Berger. Predicting DNA methylation susceptibility using CpG flanking sequences / S. Kim [and others] -- Multiscale modeling and simulation session: from molecules to cells to organisms? Session introduction / Jung-Chi Liao [and others] Combining molecular dynamics and machine learning to improve protein function recognition / Dariya S. Glazer, Randall J. Radmel, and Russ B. Altman. Prediction of structure of G-protein coupled receptors and of bound ligands with applications for drug design / Youyong Li and William A. Goddard III. Markov chain models of coupled intracellular calcium channels: Kronecker structured representations and benchmark stationary distribution calculations / Hilary DeRemigio [and others] Spatially-compressed cardiac myofilament models generate hysteresis that is not found in real muscle / John Jeremy Rice [and others] Modeling ventricular interaction: a multiscale approach from sarcomere mechanics to cardiovascular system hemodynamics / Joost Lumens [and others] Sub-micrometer anatomical models of the sarcolemma of cardiac myocytes based on confocal imaging / Frank B. Sachse [and others] Efficient multiscale simulation of circadian rhythms using automated phase macromodelling techniques / Shatam Agarwal and Jaijeet Roychowdhury. Integration of multi-scale biosimulation models via light-weight semantics / John H. Gennari [and others] Comparisons of protein family dynamics / A.J. Ruder and Joshua T. Harrell. Protein-nucleic acid interactions: interactions: integrating structure, sequence, and function. Session introduction / Martha L. Bulyk [and others] Functional trends in structural classes of the DNA binding domains on regulatory transcription factors / Rachel Patton McCord and Martha L. Bulyk. Using DNA duplex stability information for transcription factor binding site discovery / Raluca Gordân and Alexander J. Hartemink. A parametric joint model of DNA-protein binding, gene expression and DNA sequence data to detect target genes of a transcription factor / Wei Pan, Peng Wei, and Arkady Khodursky. An analysis of information content present in protein-DNA interactions / Chris KaufSman and George Karypis. Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast / Richard W Lusk and Michael B. Eisen. Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches / Jae-Hyung Lee [and others] -- Tiling microarray data analysis methods and algorithms. Session introduction / Srinka Ghosh and Antonio Piccolboni. CMARRT: a tool for the analysis of ChIP-chip data from tiling arrays by incorporating the correlation structure / Pei Fen Kuan, Hyonho Chun, and Sűndűz Keleş. Transcript normalization and segmentation of tiling array data / Georg Zellel [and others] GSE: a comprehensive database system for the representation, retrieval, and analysis of microarray data / Timothy Danford, Alex Rolfe, and David Gifford -- Translating biology: text mining tools that work. Session introduction / K. Bretonnel Cohen [and others] Assisted curation: does text mining really help? / Beatrice Alex [and others] Evidence for showing geneprotein name suggestions in bioscience literature search interfaces/ Anna Divoli, Marti A. Hearst, and Michael A. Wooldridge. Enabling integrative genomic analysis of high-impact human diseases through text mining / Joel Dudley and Atul J. Butte. Information needs and the role of text mining in drug development / Phoebe M. Roberts and William S. Hayes. EpiLoc: a (working) text-based system for predicting protein subcellular location / Scott Brady and Hagit Shatkay. Filling the gaps between tools and users: a tool comparator, using protein-protein interactions as an example / Yoshinobu Kano [and others] Comparing usability of matching techniques for normalising biomedical named entities / Xinglong Wang and Michael Matthews. Intrinsic evaluation of text mining tools may not predict performance on realistic tasks / J. Gregory Caporaso [and others] BANNER: An executable survey of advances in biomedical named entity recognition / Robert Leaman and Graciela Gonzalez. Biology Mathematical models Congresses. Biology Computer simulation Congresses. Molecular biology Mathematical models Congresses. Molecular biology Computer simulation Congresses. Biologie Modèles mathématiques Congrès. Biologie Simulation par ordinateur Congrès. Biologie moléculaire Modèles mathématiques Congrès. Biologie moléculaire Simulation par ordinateur Congrès. SCIENCE Life Sciences Molecular Biology. bisacsh Biology Computer simulation fast Biology Mathematical models fast Molecular biology Computer simulation fast Molecular biology Mathematical models fast Conference papers and proceedings fast Altman, Russ. http://id.loc.gov/authorities/names/n95004322 has work: Pacific Symposium on Biocomputing 2008 (Text) https://id.oclc.org/worldcat/entity/E39PCGwmMF49BgMHVmgVTb66PP https://id.oclc.org/worldcat/ontology/hasWork Print version: Pacific Symposium on Biocomputing (13th : 2008 : Kohala Coast, Hawaii). Pacific Symposium on Biocomputing 2008. Hackensack, N.J. : World Scientific, ©2008 9789812776082 9812776087 (OCoLC)227015347 FWS01 ZDB-4-EBA FWS_PDA_EBA https://search.ebscohost.com/login.aspx?direct=true&scope=site&db=nlebk&AN=236038 Volltext |
| spellingShingle | Pacific Symposium on Biocomputing 2008 : Kohala Coast, Hawaii, USA, 4-8 January 2008 / Beyond gap models: reconstructing alignments and phylogenies under genomic-scale events. Session introduction / Michael Brudno [and others] FRESCO: flexible alignment with rectangle scoring schemes / A.V Dalca and M. Brudno. Local reliability measures from sets of co-optimal multiple sequence alignments / Giddy Landan and Dan Graur. The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analysis / S. Nelesen. Sensitivity analysis for reversal distance and breakpoint reuse in genome rearrangements / Amit U. Sinha and Jaroslaw Meller -- Computational challenges in the study of small regulatory RNAs. Session introduction / Doron Betel, Christina Leslie, and Nikolaus Rajewsky. Comparing sequence and expression for predicting microRNA targets using GenMiR3 / J.C. Huang, B.J. Frey, and Q.D. Morris. Analysis of microRNA-target interactions by a target structure based hybridization model / Dang Long, Chi Yu Chan, and Ye Ding. A probabilistic model for small RNA flowgram matching / Vladimir Vacic [and others] -- Computational tools for next-generation sequencing applications. Session introduction / Francisco M. De La Vega, Gabor T. Marth, and Granger Sutton. TRELLIS+: an effective approach for indexing genome-scale sequences using suffix trees / Benjarath Phoophakdee and Mohammed J. Zaki. Pash 2.0: scaleable sequence anchoring for next-generation sequencing technologies / Cristian Coalfa and Aleksandar Milosavljevic. Population sequencing using short reads: HIV as a case study / Vladimir Jojic, Tomer Hertz, and Nebojsa Jojic. Analysis of large-scale sequencing of small RNAs / A.J. Olson -- Knowledge-driven analysis and data integration for high-throughput biological data. Session introduction / Michael E Ochs, John Quackenbush, and Ramana Davuluri. SGDI: system for genomic data integration / V.J. Carey. Annotating pathways of interaction networks / Jayesh Pandey [and others] Integrating microarray and proteomics data to predict the response of cetuximab in patients with rectal cancer / Anneleen Daeman [and others] A Bayesian framework for data and hypotheses driven fusion of high throughput data: application to mouse organogenesis / Mudhuchhanda Bhattacharjee, Colin Pritchard, and Peter Nelson. Gathering the gold dust: methods for assessing the aggregate impact of small effect genes in genomic scans / Michael A. Province and Ingrid B. Borecki. Multi-scale correlations in continuous genomic data / R.E. Thurman, W S. Noble, and J.A. Stamatoyannopoulos. Analysis of MALDI-TOF spectrometry data for detection of glycan biomarkers / Habtom W Ressom [and others] -- Molecular bioinformatics for disease: protein interactions and phenomics. Session introduction / Yves A. Lussiel [and others] System-wide peripheral biomarker discovery using information theory / Gil Alterovitz [and others] Novel integration of hospital electronic medical records and gene expression measurements to identify genetic markers of maturation / David P. Chen [and others] Networking pathways unveils association between obesity and non-insulin dependent diabetes mellitus / Haiyan Hu and Xiaoman Li. Extracting gene expression profiles common to colon and pancreatic adenocarcinoma using simultaneous nonnegative matrix factorization / Liviu Badea. Integration of microarray and textual data improves the prognosis prediction of breast, lung and ovarian cancer patients / 0. Gevaert, S. Van Vooren, and B. De Moor. Mining metabolic networks for optimal drug targets / Padmavati Sridhar [and others] Global alignment of multiple protein interaction networks / Rohit Singh, Jinbo Xu, and Bonnie Berger. Predicting DNA methylation susceptibility using CpG flanking sequences / S. Kim [and others] -- Multiscale modeling and simulation session: from molecules to cells to organisms? Session introduction / Jung-Chi Liao [and others] Combining molecular dynamics and machine learning to improve protein function recognition / Dariya S. Glazer, Randall J. Radmel, and Russ B. Altman. Prediction of structure of G-protein coupled receptors and of bound ligands with applications for drug design / Youyong Li and William A. Goddard III. Markov chain models of coupled intracellular calcium channels: Kronecker structured representations and benchmark stationary distribution calculations / Hilary DeRemigio [and others] Spatially-compressed cardiac myofilament models generate hysteresis that is not found in real muscle / John Jeremy Rice [and others] Modeling ventricular interaction: a multiscale approach from sarcomere mechanics to cardiovascular system hemodynamics / Joost Lumens [and others] Sub-micrometer anatomical models of the sarcolemma of cardiac myocytes based on confocal imaging / Frank B. Sachse [and others] Efficient multiscale simulation of circadian rhythms using automated phase macromodelling techniques / Shatam Agarwal and Jaijeet Roychowdhury. Integration of multi-scale biosimulation models via light-weight semantics / John H. Gennari [and others] Comparisons of protein family dynamics / A.J. Ruder and Joshua T. Harrell. Protein-nucleic acid interactions: interactions: integrating structure, sequence, and function. Session introduction / Martha L. Bulyk [and others] Functional trends in structural classes of the DNA binding domains on regulatory transcription factors / Rachel Patton McCord and Martha L. Bulyk. Using DNA duplex stability information for transcription factor binding site discovery / Raluca Gordân and Alexander J. Hartemink. A parametric joint model of DNA-protein binding, gene expression and DNA sequence data to detect target genes of a transcription factor / Wei Pan, Peng Wei, and Arkady Khodursky. An analysis of information content present in protein-DNA interactions / Chris KaufSman and George Karypis. Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast / Richard W Lusk and Michael B. Eisen. Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches / Jae-Hyung Lee [and others] -- Tiling microarray data analysis methods and algorithms. Session introduction / Srinka Ghosh and Antonio Piccolboni. CMARRT: a tool for the analysis of ChIP-chip data from tiling arrays by incorporating the correlation structure / Pei Fen Kuan, Hyonho Chun, and Sűndűz Keleş. Transcript normalization and segmentation of tiling array data / Georg Zellel [and others] GSE: a comprehensive database system for the representation, retrieval, and analysis of microarray data / Timothy Danford, Alex Rolfe, and David Gifford -- Translating biology: text mining tools that work. Session introduction / K. Bretonnel Cohen [and others] Assisted curation: does text mining really help? / Beatrice Alex [and others] Evidence for showing geneprotein name suggestions in bioscience literature search interfaces/ Anna Divoli, Marti A. Hearst, and Michael A. Wooldridge. Enabling integrative genomic analysis of high-impact human diseases through text mining / Joel Dudley and Atul J. Butte. Information needs and the role of text mining in drug development / Phoebe M. Roberts and William S. Hayes. EpiLoc: a (working) text-based system for predicting protein subcellular location / Scott Brady and Hagit Shatkay. Filling the gaps between tools and users: a tool comparator, using protein-protein interactions as an example / Yoshinobu Kano [and others] Comparing usability of matching techniques for normalising biomedical named entities / Xinglong Wang and Michael Matthews. Intrinsic evaluation of text mining tools may not predict performance on realistic tasks / J. Gregory Caporaso [and others] BANNER: An executable survey of advances in biomedical named entity recognition / Robert Leaman and Graciela Gonzalez. Biology Mathematical models Congresses. Biology Computer simulation Congresses. Molecular biology Mathematical models Congresses. Molecular biology Computer simulation Congresses. Biologie Modèles mathématiques Congrès. Biologie Simulation par ordinateur Congrès. Biologie moléculaire Modèles mathématiques Congrès. Biologie moléculaire Simulation par ordinateur Congrès. SCIENCE Life Sciences Molecular Biology. bisacsh Biology Computer simulation fast Biology Mathematical models fast Molecular biology Computer simulation fast Molecular biology Mathematical models fast |
| title | Pacific Symposium on Biocomputing 2008 : Kohala Coast, Hawaii, USA, 4-8 January 2008 / |
| title_alt | Biocomputing 2008 |
| title_auth | Pacific Symposium on Biocomputing 2008 : Kohala Coast, Hawaii, USA, 4-8 January 2008 / |
| title_exact_search | Pacific Symposium on Biocomputing 2008 : Kohala Coast, Hawaii, USA, 4-8 January 2008 / |
| title_full | Pacific Symposium on Biocomputing 2008 : Kohala Coast, Hawaii, USA, 4-8 January 2008 / edited by Russ B. Altman [and others]. |
| title_fullStr | Pacific Symposium on Biocomputing 2008 : Kohala Coast, Hawaii, USA, 4-8 January 2008 / edited by Russ B. Altman [and others]. |
| title_full_unstemmed | Pacific Symposium on Biocomputing 2008 : Kohala Coast, Hawaii, USA, 4-8 January 2008 / edited by Russ B. Altman [and others]. |
| title_short | Pacific Symposium on Biocomputing 2008 : |
| title_sort | pacific symposium on biocomputing 2008 kohala coast hawaii usa 4 8 january 2008 |
| title_sub | Kohala Coast, Hawaii, USA, 4-8 January 2008 / |
| topic | Biology Mathematical models Congresses. Biology Computer simulation Congresses. Molecular biology Mathematical models Congresses. Molecular biology Computer simulation Congresses. Biologie Modèles mathématiques Congrès. Biologie Simulation par ordinateur Congrès. Biologie moléculaire Modèles mathématiques Congrès. Biologie moléculaire Simulation par ordinateur Congrès. SCIENCE Life Sciences Molecular Biology. bisacsh Biology Computer simulation fast Biology Mathematical models fast Molecular biology Computer simulation fast Molecular biology Mathematical models fast |
| topic_facet | Biology Mathematical models Congresses. Biology Computer simulation Congresses. Molecular biology Mathematical models Congresses. Molecular biology Computer simulation Congresses. Biologie Modèles mathématiques Congrès. Biologie Simulation par ordinateur Congrès. Biologie moléculaire Modèles mathématiques Congrès. Biologie moléculaire Simulation par ordinateur Congrès. SCIENCE Life Sciences Molecular Biology. Biology Computer simulation Biology Mathematical models Molecular biology Computer simulation Molecular biology Mathematical models Conference papers and proceedings |
| url | https://search.ebscohost.com/login.aspx?direct=true&scope=site&db=nlebk&AN=236038 |
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