Genomes, browsers, and databases :: data-mining tools for integrated genomic databases /
The recent explosive growth of biological data has lead to a rapid increase in the number of molecular biology databases. Held in many different locations and often using varying interfaces and non-standard data formats, integrating and comparing data from these multiple databases can be difficult a...
Gespeichert in:
| 1. Verfasser: | |
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| Format: | Elektronisch E-Book |
| Sprache: | English |
| Veröffentlicht: |
Cambridge [UK] ; New York :
Cambridge University Press,
2008.
|
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Zusammenfassung: | The recent explosive growth of biological data has lead to a rapid increase in the number of molecular biology databases. Held in many different locations and often using varying interfaces and non-standard data formats, integrating and comparing data from these multiple databases can be difficult and time-consuming. This book provides an overview of the key tools currently available for large-scale comparisons of gene sequences and annotations, focusing on the databases and tools from the University of California, Santa Cruz (UCSC), Ensembl, and the National Centre for Biotechnology Information (NCBI). Written specifically for biology and bioinformatics students and researchers, it aims to give an appreciation of the methods by which the browsers and their databases are constructed, enabling readers to determine which tool is the most appropriate for their requirements. Each chapter contains a summary and exercises to aid understanding and promote effective use of these important tools. |
| Beschreibung: | 1 online resource (xii, 328 pages) : illustrations |
| Bibliographie: | Includes bibliographical references (pages 307-312) and index. |
| ISBN: | 9780511415289 0511415281 9780511410666 0511410662 0511414609 9780511414602 9780511754838 0511754833 |
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| 245 | 1 | 0 | |a Genomes, browsers, and databases : |b data-mining tools for integrated genomic databases / |c Peter Schattner. |
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| 504 | |a Includes bibliographical references (pages 307-312) and index. | ||
| 505 | 0 | |a The molecular biology data explosion -- Introduction to genome browsing with the UCSC genome browser -- Browsing with Ensembl, MapViewer, and other genome browsers -- Interactive genome-database batch querying -- Interactive batch post-processing with galaxy -- Introduction to programmed querying -- Using the Ensembl API -- Programmed querying with Ensembl, continued -- Introduction to the UCSC API -- More advanced applications using the UCSC API -- Customized genome databases -- Genomes, browsers, databases : the future. | |
| 588 | 0 | |a Print version record. | |
| 520 | |a The recent explosive growth of biological data has lead to a rapid increase in the number of molecular biology databases. Held in many different locations and often using varying interfaces and non-standard data formats, integrating and comparing data from these multiple databases can be difficult and time-consuming. This book provides an overview of the key tools currently available for large-scale comparisons of gene sequences and annotations, focusing on the databases and tools from the University of California, Santa Cruz (UCSC), Ensembl, and the National Centre for Biotechnology Information (NCBI). Written specifically for biology and bioinformatics students and researchers, it aims to give an appreciation of the methods by which the browsers and their databases are constructed, enabling readers to determine which tool is the most appropriate for their requirements. Each chapter contains a summary and exercises to aid understanding and promote effective use of these important tools. | ||
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| 650 | 0 | |a Browsers (Computer programs) |0 http://id.loc.gov/authorities/subjects/sh98001500 | |
| 650 | 0 | |a Genomics. |0 http://id.loc.gov/authorities/subjects/sh2002000809 | |
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| author | Schattner, Peter, 1948- |
| author_GND | http://id.loc.gov/authorities/names/n2008180361 |
| author_facet | Schattner, Peter, 1948- |
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| contents | The molecular biology data explosion -- Introduction to genome browsing with the UCSC genome browser -- Browsing with Ensembl, MapViewer, and other genome browsers -- Interactive genome-database batch querying -- Interactive batch post-processing with galaxy -- Introduction to programmed querying -- Using the Ensembl API -- Programmed querying with Ensembl, continued -- Introduction to the UCSC API -- More advanced applications using the UCSC API -- Customized genome databases -- Genomes, browsers, databases : the future. |
| ctrlnum | (OCoLC)247064130 |
| dewey-full | 572.8/602856312 |
| dewey-hundreds | 500 - Natural sciences and mathematics |
| dewey-ones | 572 - Biochemistry |
| dewey-raw | 572.8/602856312 |
| dewey-search | 572.8/602856312 |
| dewey-sort | 3572.8 9602856312 |
| dewey-tens | 570 - Biology |
| discipline | Biologie |
| format | Electronic eBook |
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| indexdate | 2024-11-27T13:16:27Z |
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| physical | 1 online resource (xii, 328 pages) : illustrations |
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| spelling | Schattner, Peter, 1948- https://id.oclc.org/worldcat/entity/E39PCjrG9R7XTbg6kvQxHmGDmb http://id.loc.gov/authorities/names/n2008180361 Genomes, browsers, and databases : data-mining tools for integrated genomic databases / Peter Schattner. Cambridge [UK] ; New York : Cambridge University Press, 2008. 1 online resource (xii, 328 pages) : illustrations text txt rdacontent computer c rdamedia online resource cr rdacarrier Includes bibliographical references (pages 307-312) and index. The molecular biology data explosion -- Introduction to genome browsing with the UCSC genome browser -- Browsing with Ensembl, MapViewer, and other genome browsers -- Interactive genome-database batch querying -- Interactive batch post-processing with galaxy -- Introduction to programmed querying -- Using the Ensembl API -- Programmed querying with Ensembl, continued -- Introduction to the UCSC API -- More advanced applications using the UCSC API -- Customized genome databases -- Genomes, browsers, databases : the future. Print version record. The recent explosive growth of biological data has lead to a rapid increase in the number of molecular biology databases. Held in many different locations and often using varying interfaces and non-standard data formats, integrating and comparing data from these multiple databases can be difficult and time-consuming. This book provides an overview of the key tools currently available for large-scale comparisons of gene sequences and annotations, focusing on the databases and tools from the University of California, Santa Cruz (UCSC), Ensembl, and the National Centre for Biotechnology Information (NCBI). Written specifically for biology and bioinformatics students and researchers, it aims to give an appreciation of the methods by which the browsers and their databases are constructed, enabling readers to determine which tool is the most appropriate for their requirements. Each chapter contains a summary and exercises to aid understanding and promote effective use of these important tools. Gene libraries. http://id.loc.gov/authorities/subjects/sh90004176 Genomics Data processing. Databases. http://id.loc.gov/authorities/subjects/sh86007767 Browsers (Computer programs) http://id.loc.gov/authorities/subjects/sh98001500 Genomics. http://id.loc.gov/authorities/subjects/sh2002000809 Databases, Genetic Genomics Gene Library Molecular Biology Software User-Computer Interface Banques de gènes. Génomique Informatique. Navigateurs (Logiciels) Génomique. Logiciels. software. aat SCIENCE Life Sciences Genetics & Genomics. bisacsh Genomics fast Browsers (Computer programs) fast Databases fast Gene libraries fast Genomics Data processing fast Electronic books. Database https://id.nlm.nih.gov/mesh/D019991 databases. aat Databases. lcgft http://id.loc.gov/authorities/genreForms/gf2014026081 Bases de données. rvmgf has work: Genomes, browsers, and databases (Text) https://id.oclc.org/worldcat/entity/E39PCGgKJH7kBWPmGpfypgqb3P https://id.oclc.org/worldcat/ontology/hasWork Print version: Schattner, Peter, 1948- Genomes, browsers, and databases. Cambridge [UK] ; New York : Cambridge University Press, 2008 9780521884433 0521884438 (DLC) 2008003901 (OCoLC)191751595 FWS01 ZDB-4-EBA FWS_PDA_EBA https://search.ebscohost.com/login.aspx?direct=true&scope=site&db=nlebk&AN=234367 Volltext |
| spellingShingle | Schattner, Peter, 1948- Genomes, browsers, and databases : data-mining tools for integrated genomic databases / The molecular biology data explosion -- Introduction to genome browsing with the UCSC genome browser -- Browsing with Ensembl, MapViewer, and other genome browsers -- Interactive genome-database batch querying -- Interactive batch post-processing with galaxy -- Introduction to programmed querying -- Using the Ensembl API -- Programmed querying with Ensembl, continued -- Introduction to the UCSC API -- More advanced applications using the UCSC API -- Customized genome databases -- Genomes, browsers, databases : the future. Gene libraries. http://id.loc.gov/authorities/subjects/sh90004176 Genomics Data processing. Databases. http://id.loc.gov/authorities/subjects/sh86007767 Browsers (Computer programs) http://id.loc.gov/authorities/subjects/sh98001500 Genomics. http://id.loc.gov/authorities/subjects/sh2002000809 Databases, Genetic Genomics Gene Library Molecular Biology Software User-Computer Interface Banques de gènes. Génomique Informatique. Navigateurs (Logiciels) Génomique. Logiciels. software. aat SCIENCE Life Sciences Genetics & Genomics. bisacsh Genomics fast Browsers (Computer programs) fast Databases fast Gene libraries fast Genomics Data processing fast |
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| title | Genomes, browsers, and databases : data-mining tools for integrated genomic databases / |
| title_auth | Genomes, browsers, and databases : data-mining tools for integrated genomic databases / |
| title_exact_search | Genomes, browsers, and databases : data-mining tools for integrated genomic databases / |
| title_full | Genomes, browsers, and databases : data-mining tools for integrated genomic databases / Peter Schattner. |
| title_fullStr | Genomes, browsers, and databases : data-mining tools for integrated genomic databases / Peter Schattner. |
| title_full_unstemmed | Genomes, browsers, and databases : data-mining tools for integrated genomic databases / Peter Schattner. |
| title_short | Genomes, browsers, and databases : |
| title_sort | genomes browsers and databases data mining tools for integrated genomic databases |
| title_sub | data-mining tools for integrated genomic databases / |
| topic | Gene libraries. http://id.loc.gov/authorities/subjects/sh90004176 Genomics Data processing. Databases. http://id.loc.gov/authorities/subjects/sh86007767 Browsers (Computer programs) http://id.loc.gov/authorities/subjects/sh98001500 Genomics. http://id.loc.gov/authorities/subjects/sh2002000809 Databases, Genetic Genomics Gene Library Molecular Biology Software User-Computer Interface Banques de gènes. Génomique Informatique. Navigateurs (Logiciels) Génomique. Logiciels. software. aat SCIENCE Life Sciences Genetics & Genomics. bisacsh Genomics fast Browsers (Computer programs) fast Databases fast Gene libraries fast Genomics Data processing fast |
| topic_facet | Gene libraries. Genomics Data processing. Databases. Browsers (Computer programs) Genomics. Databases, Genetic Genomics Gene Library Molecular Biology Software User-Computer Interface Banques de gènes. Génomique Informatique. Navigateurs (Logiciels) Génomique. Logiciels. software. SCIENCE Life Sciences Genetics & Genomics. Databases Gene libraries Genomics Data processing Electronic books. Database databases. Bases de données. |
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| work_keys_str_mv | AT schattnerpeter genomesbrowsersanddatabasesdataminingtoolsforintegratedgenomicdatabases |