Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis:
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| Format: | Abschlussarbeit Buch |
| Sprache: | English |
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Potsdam
December 2017
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| Online-Zugang: | Inhaltsverzeichnis Inhaltsverzeichnis |
| Beschreibung: | xxv, 354 Seiten Illustrationen, Diagramme 30 cm |
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| 245 | 1 | 0 | |a Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis |c von Thiago Alexandre Moraes |
| 264 | 1 | |a Potsdam |c December 2017 | |
| 300 | |a xxv, 354 Seiten |b Illustrationen, Diagramme |c 30 cm | ||
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Datensatz im Suchindex
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|---|---|
| adam_text | CONTENTS
CONTENTS..................................................................................................................................I
ACKNOWLEDGEMENTS..............................................................................................................
V
DECLARATION..........................................................................................................................
VII
SUMMARY............................................................................................................................
VIII
ZUSAMMENFASSUNG............................................................................................................
XIV
LIST OF
ABBREVIATION...........................................................................................................
XIX
CHAPTER 1 -
INTRODUCTION......................................................................................................
1
TOWARDS UNDERSTANDING THE DIURNAL REGULATION OF CARBON METABOLISM
.................................
2
DIURNAL CARBON
METABOLISM.................................................................................................4
CARBON FIXATION VIA
PHOTOSYNTHESIS..................................................................................4
CARBON PARTITIONING AND
METABOLISM................................................................................4
SUCROSE
SYNTHESIS...........................................................................................................
5
STARCH, METABOLISM OF TRANSIENT CARBON RESERVE
..............................................................
7
CIRCADIAN CLOCK IN
ARABIDOPSIS...........................................................................................
13
BRIEF INTRODUCTION TO CIRCADIAN
CLOCKS..............................................................................13
CIRCADIAN CLOCK IN ARABIDOPSIS THALIANA - MOLECULAR DESCRIPTION
....................................
14
LIGHT AND CARBON PERCEPTION AND
SIGNALLING.......................................................................18
LIGHT SIGNALLING
PATHWAYS...............................................................................................
18
CARBON/SUGAR SIGNALLING
PATHWAYS.................................................................................22
OUTPUTS OF THE
CLOCK..........................................................................................................
25
THE ROLE OF THE CLOCK IN REGULATING STARCH METABOLISM
...................................................
26
EFFECT OF CLOCK MUTATION ON CARBON METABOLISM
.............................................................
28
THE PIF FAMILY - REGULATION OF HYPOCOTYL ELONGATION
......................................................
29
BI-DIRECTIONAL LINK BETWEEN THE CLOCK AND THE CARBON METABOLISM
.....................................
30
THESIS
OBJECTIVES..............................................................................................................
33
CHAPTER 2 - MATERIAL AND
METHODS.....................................................................................34
PLANT
MATERIAL....................................................................................................................
35
PLANT GROWTH
CONDITIONS.....................................................................................................
35
EXPERIMENTAL
DESIGN......................................................................................................
37
PREPARATION FOR GAS EXCHANGE
MEASUREMENTS...............................................................40
MOLECULAR
METHODS............................................................................................................
40
ANALYSIS OF TRANSCRIPT
ABUNDANCE...................................................................................
40
ANALYSIS OF METABOLITE
CONTENT.......................................................................................
45
GAS
EXCHANGE...................................................................................................................
48
DATA
PRE-PROCESSING..........................................................................................................
49
QRT-PCR
DATA...............................................................................................................
49
METABOLITE
DATA..............................................................................................................
50
GAS EXCHANGE
DATA.......................................................................................................
50
STATISTICS............................................................................................................................51
ANALYSIS OF VARIANCE AND ANALYSIS OF
CO-VARIANCE...........................................................51
TUKEY*S HONEST SIGNIFICANT DIFFERENCES
POST-TEST...........................................................51
KOLMOGOROV-SMIRNOV
TEST..............................................................................................
52
CONFIDENCE
INTERVAL........................................................................................................
52
GAUSSIAN ERROR
PROPAGATION...........................................................................................
54
EFFECT SIZE
QUANTIFICATION...................................................................................................
55
EFFECT SIZE STATISTICAL SIGNIFICANCE THRESHOLD DETERMINATION
............................................
56
EFFECT SIZE
SUMMARIZATION..............................................................................................
57
EFFECT MAGNITUDE
COMPARISON............................................................................................
57
RATES OF STARCH ACCUMULATION AND
DEGRADATION.................................................................58
ESTIMATION OF THE PROJECTED TIME OF STARCH
DEPLETION..........................................................59
CARBON BALANCE AND ESTIMATION OF CARBON
ALLOCATION.........................................................59
PRINCIPAL COMPONENT
ANALYSIS...........................................................................................
60
*CARBON-STATUS*
SCORE.....................................................................................................
61
DETERMINATION OF THE TIME OF PEAKING OF A
TRANSCRIPT..........................................................61
*OSCILLATION SCORE*
..............................................................................................................
62
CHAPTER 3 - OVERCAST METABOLISM AND CARBON AND LIGHT RELATED GENES
.........................
63
INTRODUCTION
64
RESULTS
67
EXPERIMENTAL
DESIGN......................................................................................................
67
PHOTOSYNTHESIS AND
RESPIRATION....................................................................................74
METABOLIC TEMPORAL
PROFILES............................................................................................
75
STARVATION MARKERS AND CARBON RELATED
GENES.............................................................102
LIGHT SIGNALLING GENES
..................................................................................................
113
DISCUSSION.......................................................................................................................121
SUPPLEMENTAL
MATERIAL....................................................................................................
130
CHAPTER 4 - OVERCAST CORE CLOCK AND CLOCK ASSOCIATED GENES
.....................................
153
INTRODUCTION......................................................................................................................154
RESULTS.............................................................................................................................156
CORE CLOCK
TRANSCRIPT....................................................................................................
156
CLOCK ASSOCIATED
GENES...............................................................................................
169
EFFECT SIZES MAGNITUDE
COMPARISON.............................................................................190
PHASE SHIFT ANALYSIS / PEAK
ANALYSIS............................................................................194
DISCUSSION.......................................................................................................................197
SUPPLEMENTAL
MATERIAL....................................................................................................
211
CHAPTER 5 -
DESYNC..........................................................................................................
227
INTRODUCTION.....................................................................................................................
228
RESULTS............................................................................................................................
231
STABLE GROWTH CONDITIONS IN A 24 HOURS CYCLE
..............................................................
231
CARBON CHALLENGING
EXPERIMENTS.................................................................................250
NON-24 HOUR DIURNAL CYCLE
EXPERIMENTS.......................................................................255
SUDDEN UNEXPECTED CHANGES: EARLY DUSK AND FLUCTUATING ENVIRONMENTAL
CONDITIONS ...266
DISCUSSION......................................................................................................................
286
SUPPLEMENTAL
MATERIAL....................................................................................................
297
CHAPTER 6 - GENERAL
DISCUSSION......................................................................................309
GENERAL
AIMS..................................................................................................................
310
CHAPTERS 3 AND 4 - EXPLORING THE ROLE OF THE CIRCADIAN CLOCK IN THE
REGULATION OF STARCH
TURNOVER IN WILD-TYPE
PLANTS.............................................................................................
310
CHAPTER 5 - FINDINGS ON THE REGULATION OF THE STARCH TURNOVER IN PLANTS
WITH SEVERELY
DISRUPTED CIRCADIAN
CLOCK.................................................................................................
313
FINAL
CONCLUSION...............................................................................................................316
BIBLIOGRAPHY......................................................................................................................318
|
| adam_txt |
CONTENTS
CONTENTS.I
ACKNOWLEDGEMENTS.
V
DECLARATION.
VII
SUMMARY.
VIII
ZUSAMMENFASSUNG.
XIV
LIST OF
ABBREVIATION.
XIX
CHAPTER 1 -
INTRODUCTION.
1
TOWARDS UNDERSTANDING THE DIURNAL REGULATION OF CARBON METABOLISM
.
2
DIURNAL CARBON
METABOLISM.4
CARBON FIXATION VIA
PHOTOSYNTHESIS.4
CARBON PARTITIONING AND
METABOLISM.4
SUCROSE
SYNTHESIS.
5
STARCH, METABOLISM OF TRANSIENT CARBON RESERVE
.
7
CIRCADIAN CLOCK IN
ARABIDOPSIS.
13
BRIEF INTRODUCTION TO CIRCADIAN
CLOCKS.13
CIRCADIAN CLOCK IN ARABIDOPSIS THALIANA - MOLECULAR DESCRIPTION
.
14
LIGHT AND CARBON PERCEPTION AND
SIGNALLING.18
LIGHT SIGNALLING
PATHWAYS.
18
CARBON/SUGAR SIGNALLING
PATHWAYS.22
OUTPUTS OF THE
CLOCK.
25
THE ROLE OF THE CLOCK IN REGULATING STARCH METABOLISM
.
26
EFFECT OF CLOCK MUTATION ON CARBON METABOLISM
.
28
THE PIF FAMILY - REGULATION OF HYPOCOTYL ELONGATION
.
29
BI-DIRECTIONAL LINK BETWEEN THE CLOCK AND THE CARBON METABOLISM
.
30
THESIS
OBJECTIVES.
33
CHAPTER 2 - MATERIAL AND
METHODS.34
PLANT
MATERIAL.
35
PLANT GROWTH
CONDITIONS.
35
EXPERIMENTAL
DESIGN.
37
PREPARATION FOR GAS EXCHANGE
MEASUREMENTS.40
MOLECULAR
METHODS.
40
ANALYSIS OF TRANSCRIPT
ABUNDANCE.
40
ANALYSIS OF METABOLITE
CONTENT.
45
GAS
EXCHANGE.
48
DATA
PRE-PROCESSING.
49
QRT-PCR
DATA.
49
METABOLITE
DATA.
50
GAS EXCHANGE
DATA.
50
STATISTICS.51
ANALYSIS OF VARIANCE AND ANALYSIS OF
CO-VARIANCE.51
TUKEY*S HONEST SIGNIFICANT DIFFERENCES
POST-TEST.51
KOLMOGOROV-SMIRNOV
TEST.
52
CONFIDENCE
INTERVAL.
52
GAUSSIAN ERROR
PROPAGATION.
54
EFFECT SIZE
QUANTIFICATION.
55
EFFECT SIZE STATISTICAL SIGNIFICANCE THRESHOLD DETERMINATION
.
56
EFFECT SIZE
SUMMARIZATION.
57
EFFECT MAGNITUDE
COMPARISON.
57
RATES OF STARCH ACCUMULATION AND
DEGRADATION.58
ESTIMATION OF THE PROJECTED TIME OF STARCH
DEPLETION.59
CARBON BALANCE AND ESTIMATION OF CARBON
ALLOCATION.59
PRINCIPAL COMPONENT
ANALYSIS.
60
*CARBON-STATUS*
SCORE.
61
DETERMINATION OF THE TIME OF PEAKING OF A
TRANSCRIPT.61
*OSCILLATION SCORE*
.
62
CHAPTER 3 - OVERCAST METABOLISM AND CARBON AND LIGHT RELATED GENES
.
63
INTRODUCTION
64
RESULTS
67
EXPERIMENTAL
DESIGN.
67
PHOTOSYNTHESIS AND
RESPIRATION.74
METABOLIC TEMPORAL
PROFILES.
75
STARVATION MARKERS AND CARBON RELATED
GENES.102
LIGHT SIGNALLING GENES
.
113
DISCUSSION.121
SUPPLEMENTAL
MATERIAL.
130
CHAPTER 4 - OVERCAST CORE CLOCK AND CLOCK ASSOCIATED GENES
.
153
INTRODUCTION.154
RESULTS.156
CORE CLOCK
TRANSCRIPT.
156
CLOCK ASSOCIATED
GENES.
169
EFFECT SIZES MAGNITUDE
COMPARISON.190
PHASE SHIFT ANALYSIS / PEAK
ANALYSIS.194
DISCUSSION.197
SUPPLEMENTAL
MATERIAL.
211
CHAPTER 5 -
DESYNC.
227
INTRODUCTION.
228
RESULTS.
231
STABLE GROWTH CONDITIONS IN A 24 HOURS CYCLE
.
231
CARBON CHALLENGING
EXPERIMENTS.250
NON-24 HOUR DIURNAL CYCLE
EXPERIMENTS.255
SUDDEN UNEXPECTED CHANGES: EARLY DUSK AND FLUCTUATING ENVIRONMENTAL
CONDITIONS .266
DISCUSSION.
286
SUPPLEMENTAL
MATERIAL.
297
CHAPTER 6 - GENERAL
DISCUSSION.309
GENERAL
AIMS.
310
CHAPTERS 3 AND 4 - EXPLORING THE ROLE OF THE CIRCADIAN CLOCK IN THE
REGULATION OF STARCH
TURNOVER IN WILD-TYPE
PLANTS.
310
CHAPTER 5 - FINDINGS ON THE REGULATION OF THE STARCH TURNOVER IN PLANTS
WITH SEVERELY
DISRUPTED CIRCADIAN
CLOCK.
313
FINAL
CONCLUSION.316
BIBLIOGRAPHY.318 |
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| spelling | Moraes, Thiago Alexandre Verfasser (DE-588)1163486728 aut Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis von Thiago Alexandre Moraes Potsdam December 2017 xxv, 354 Seiten Illustrationen, Diagramme 30 cm txt rdacontent n rdamedia nc rdacarrier Dissertation Universität Potsdam 2017 Summary in deutsch und englisch Tagesrhythmus (DE-588)4078131-8 gnd rswk-swf (DE-588)4113937-9 Hochschulschrift gnd-content Tagesrhythmus (DE-588)4078131-8 s DE-604 B:DE-101 application/pdf https://d-nb.info/1163759139/04 Inhaltsverzeichnis DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=033829156&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis 1\p dnb 20180817 DE-101 https://d-nb.info/provenance/plan#dnb |
| spellingShingle | Moraes, Thiago Alexandre Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis Tagesrhythmus (DE-588)4078131-8 gnd |
| subject_GND | (DE-588)4078131-8 (DE-588)4113937-9 |
| title | Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis |
| title_auth | Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis |
| title_exact_search | Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis |
| title_exact_search_txtP | Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis |
| title_full | Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis von Thiago Alexandre Moraes |
| title_fullStr | Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis von Thiago Alexandre Moraes |
| title_full_unstemmed | Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis von Thiago Alexandre Moraes |
| title_short | Exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in Arabidopsis |
| title_sort | exploring the role of the circadian clock in the regulation of starch turnover in changing light conditions in arabidopsis |
| topic | Tagesrhythmus (DE-588)4078131-8 gnd |
| topic_facet | Tagesrhythmus Hochschulschrift |
| url | https://d-nb.info/1163759139/04 http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=033829156&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT moraesthiagoalexandre exploringtheroleofthecircadianclockintheregulationofstarchturnoverinchanginglightconditionsinarabidopsis |
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