Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species:
Gespeichert in:
| 1. Verfasser: | |
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| Format: | Abschlussarbeit Buch |
| Sprache: | English |
| Veröffentlicht: |
Giessen
VVB Laufersweiler Verlag
2018
|
| Ausgabe: | 1. Auflage |
| Schriftenreihe: | Edition scientifique
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | 235 Seiten Illustrationen, Diagramme |
| ISBN: | 9783835967090 |
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| 245 | 1 | 0 | |a Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species |c eingereicht von Osama Sammra |
| 246 | 1 | 3 | |a Pheno- and genotyping of Arcanobacterium |
| 250 | |a 1. Auflage | ||
| 264 | 1 | |a Giessen |b VVB Laufersweiler Verlag |c 2018 | |
| 300 | |a 235 Seiten |b Illustrationen, Diagramme | ||
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| 502 | |b Dissertation |c Justus-Liebig-Universität Gießen |d 2018 | ||
| 650 | 7 | |a Arcanobacterium |2 cabt | |
| 650 | 7 | |a biochemistry |2 cabt | |
| 650 | 7 | |a genetics |2 cabt | |
| 650 | 7 | |a research |2 cabt | |
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Datensatz im Suchindex
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| adam_text | TABLE OF CONTENT
CHAPTER 1 -
INTRODUCTION..........................................................................................................................1
CHAPTER 2 - REVIEW OF
LITERATURE............................................................................................................
2
2.1 - POLYPHASIC
TAXONOMY..................................................................................................................
2
2.1.1 - PHENOTYPIC
CHARACTERIZATION....................................................................................................
2
2.1.1.1 - COLONY CHARACTERIZATION, BIOCHEMICAL AND PHYSIOLOGICAL
ANALYSIS
....................................
2
2.1.1.2 - NUMERICAL
TAXONOMY...........................................................................................................4
2.1.1.3 - CHEMOTAXONOMIC
ANALYSIS..................................................................................................
4
2.1.1.3.1 - PEPTIDOGLYCAN
ANALYSIS....................................................................................................
4
2.1.1.3.2 - FATTY ACID
ANALYSIS............................................................................................................5
2.1.1.3.3 - ISOPRENOID
QUINONES..........................................................................................................
6
2.1.1.3.4 -
POLYAMINES.........................................................................................................................
7
2.1.1.4 - SPECTROSCOPY
TECHNIQUES....................................................................................................7
2.1.1.4.1 - MATRIX-ASSISTED LASER DESORPTION IONIZATION-TIME OF FLIGHT
MASS SPECTROMETRY
(MALDI-TOF MS
ANALYSIS)...........................................................................................
7
2.1.1.4.2 - FOURIER TRANSFORM-INFRARED SPECTROMETRY
(FT-IR).........................................................9
2.1.2 - GENOTYPIC
CHARACTERIZATION.................................................................................................9
2.1.2.1 - RIBONUCLEIC ACID (RNA) AS A MOLECULAR
TARGET...................................................................
9
2.1.2.1.1 - 16S RRNA
GENE................................................................................................................
10
2.1.2.1.2 - 16S-23S RDNA INTERGENIC SPACER REGION
(ISR).............................................................12
2.1.2.1.3 - 23S RRNA
GENE................................................................................................................
12
2.1.2.2 - PROTEIN-ENCODING GENES AS
TARGETS......................................................................................13
2.1.2.2.1 - RNA POLYMERASE ENCODING GENE RPOB
..........................................................................
13
2.1.2.2.2 - SUPEROXIDE DISMUTASE A ENCODING GENE
SODA...............................................................14
2.1.2.2.3 - GENES ENCODING MOONLIGHTING
PROTEINS.........................................................................
15
2.1.2.2.3.1 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE ENCODING GENE GAP
.........................
16
2.1.2.2.3..2 - ELONGATION FACTOR TU ENCODING GENE T U F
..................................................................... 18
2.1.2.2.3.3 - HEAT SHOCK PROTEIN OR CHAPERONIN CPN60 ENCODING GENE
CPN60..............................20
2.1.2.3 - DNA BASE (G + C)
CONTENT...........................................................................................
21
2.1.2.4 - DNA-DNA
HYBRIDIZATION..................................................................................................21
2.1.2.5 - RESTRICTION FRAGMENT LENGTH POLYMORPHISM
(RFLP).........................................................23
2.1.2.6 - RANDOM AMPLIFIED POLYMORPHISM DNA
(RAPD)............................................................24
2.1.2.7 - AMPLIFIED FRAGMENT LENGTH POLYMORPHISM
(AFLP)..........................................................25
2.1.2.8 - PCR
RIBOTYPING.................................................................................................................
26
2.1.2.9 - REPETITIVE SEQUENCE-BASED PCR
(REP-PCR).....................................................................26
2.1.2.10 - MULTILOCUS SEQUENCE TYPING
(MLST)..............................................................................
27
2.1.2.11 - WHOLE GENOME
SEQUENCING..............................................................................................28
2.1.2.12 - AVERAGE NUCLEOTIDE IDENTITY
(ANI).................................................................................
31
2.2 - GENUS
ARCANOBACTERIUM.......................................................................................................32
2.2.1 - HISTORY AND
TAXONOMY..........................................................................................................32
2.2.2 - GROWTH CONDITIONS AND
MORPHOLOGY....................................................................................
34
2.2.3 - SPECIES OF GENUS
ARCANOBACTERIUM
.....................................................................................
34
2.2.3.1 - A.
HAEMOLYTICUM.................................................................................................................34
2.2.3.1.1 - IMPORTANCE OF A. HAEMOLYTICUM CAUSING INFECTIONS IN HUMANS
AND ANIMALS
...............
36
2.2.3.1.2 - A. HAEMOLYTICUM GENOME
SEQUENCE...............................................................................
37
2.2.3.1.3 - PUTATIVE VIRLUENCE FACTORS OF A. HAEMOLYTICUM
.............................................................
37
2.2.3.1.3.1 -
ARCANOLYSIN...................................................................................................................37
2.2.3.1.3.2 - PHOSPHOLIPASE D
..........................................................................................................
37
2.2.3.1.3.3 -
NEURAMINIDASES...........................................................................................................
38
2.2.3.1.3.4 - COLLAGEN BINDING
PROTEINS............................................................................................39
2.2.3.2 - A.
HIPPOCOLEAE....................................................................................................................40
2.2.3.3 - A.
PLURANIMALIUM...............................................................................................................
41
2.2.3.4 - A.
PHOCAE...........................................................................................................................
42 .
2.2.3.5 - A.
URINIMASSILIENSE.............................................................................................................
44
CHAPTER 3 -
PUBLICATIONS.......................................................................................................................45
APPENDIX 1 PROPERTIES OF AN ARCANOBACTERIUM HAEMOLYTICUM STRAIN ISOLATED
FROM A DONKEY.
SAMMRA, O., BALBUTSKAYA, A., NAGIB, S., ALBER, J., LAEMMLER, C.,
ABDULMAWJOOD, A.,
TIMKE, M., KOSTRZEWA, M., PRENGER-BEMINGHOFF, E. 2014. BERL. MUENCH.
TIERAERZTL.
WOCHENSCHR. 127,
10-14...............................................................................................
46
APPENDIX 2 PHENOTYPIC AND GENOTYPIC CHARACTERISTICS OF ARCANOBACTERIUM
HAEMOLYTICUM
ISOLATED FROM CLINICAL SAMPLES IN A DANISH HOSPITAL. SAMMRA, O.,
FRIIS-MOLLER A.,
BALBUTSKAYA, A., HIJAZIN, M., NAGIB, S., ALBER, J., LAEMMLER, C.,
ABDULMAWJOOD, A.,
TIMKE, M., KOSTRZEWA, M., PRENGER-BEMINGHOFF, E. 2014. FOLIA. MICROBIOL.
(PRAHA)
59,
369-374...................................................................................................................
59
APPENDIX 3 IDENTIFICATION OF ARCANOBACTERIUM PLURANIMALIUM BY
MATRIX-ASSISTED LASER
DESORPTION IONIZATION-TIME OF FLIGHT MASS SPECTROMETRY AND, AS NOVEL
TARGET, BY
SEQUENCING PLURANIMALIUMLYSIN ENCODING GENE PLA. BALBUTSKAYA, A.,
SAMMRA,
O., NAGIB, S., HIJAZIN, M., LAEMMLER, C., FOSTER, G., ERHARD, M.,
ABDULMAWJOOD, A.,
PRENGER-BEMINGHOFF, E. 2014. VET. MICROBIOL. 168,428-431
...................................
65
APPENDIX 4 PHENOTYPICAL AND GENOTYPICAL PROPERTIES OF AN ARCANOBACTERIUM
PLURANIMALIUM
STRAIN ISOLATED FROM A JUVENILE GIRAFFE (GIRAFFA CAMELOPARDALIS
RETICULATA). RISSE,
K., SCHLEZ, K., EISENBERG, T., GEIGER, C., BALBUTSKAYA, A., SAMMRA, O.,
LAEMMLER, C.,
ABDULMAWJOOD, A. 2014. J.VET. MED. 2014,
1-5........................................................69
APPENDIX 5 PHENOTYPIC AND GENOTYPIC ANALYSIS OF AN
ARCANOBACTERIUM PLURANIMALIUM ISOLATED
FROM A MUSKOX (OVIBOS MOSCHATUS). NINGRUM S.G., AMAFIA, W., SAMMRA, O.,
AISSAHEN, M., WICKHORST, J.-P., HASSAN, A.A., LAEMMLER, C.,
PRENGER-BEMINGHOFF, E.,
TIMKE, M., ABDULMAWJOOD. 2017. VETERINARIA. 66, 28-36
.........................................
74
APPENDIX 6 ARCANOBACTERIUM CANIS SP. NOV., ISOLATED FROM OTITIS EXTERNA
OF A DOG, AND EMENDED
DESCRIPTION OF THE GENUS
ARCANOBACTERIUM COLLINS ET AL. 1983 EMEND. YASSIN ET AL.
2011. HIJAZIN, M., PRENGER-BEMINGHOFF E., SAMMRA O., ALBER, J., LAEMMLER,
C.,
KAEMPFER, P., GLAESER, S.P., BUSSE, H.J., HASSAN, A.A., ABDULMAWJOOD, A.,
ZSCHOECK,
M. 2012. INT. J. SYST. EVOL. MICROBIOL. 62, 2201-2205
..............................................
81
APPENDIX 7 FURTHER CHARACTERISTICS OF ARCANOBACTERIUM CANIS, A NOVEL
SPECIES OF GENUS
ARCANOBACTERIUM. SAMMRA, O., BALBUTSKAYA, A., ZHANG, S., HIJAZIN, M.,
NAGIB, S.,
LAEMMLER, C., ABDULMAWJOOD, A., PRENGER-BEMINGHOFF, E., KOSTRZEWA, M.,
TIMKE,
M. 2013. VET. MICROBIOL. 167,
619-622......................................................................
95
APPENDIX 8 ARCANOBACTERIUM PHOCISIMILE SP. NOV., ISOLATED FROM HARBOUR
SEALS. HIJAZIN, M.,
SAMMRA, O., UELBEGI-MOHYLA, H., NAGIB, S., ALBER. J., LAEMMLER, C.,
KAEMPFER. P.,
GLAESER, S.P., BUSSE, H.J., KASSMANNHUBER, J., PRENGER-BEMINGHOFF, E.,
WEISS, R.,
SIEBERT, U., HASSAN, A.A., ABDULMAWJOOD, A., ZSCHOECK, M. 2013. INT. J.
SYST. EVOL.
MICROBIOL. 63,
2019-2024...........................................................................................100
APPENDIX 9 FURTHER STUDIES ON ARCANOBACTERIUM PHOCISIMILE: A NOVEL
SPECIES OF GENUS
ARCANOBACTERIUM. SAMMRA, O., BALBUTSKAYA, A., HIJAZIN, M., NAGIB, S.,
ALBER, J.,
LAEMMLER, C., ABDULMAWJOOD, A., PRENGER-BEMINGHOFF, E., TIMKE, M.,
KOSTRZEWA,
M., SIEBERT, U. 2014. J. VET. MED. 2014,
1-5............................................................115
APPENDIX 10 ARCANOBACTERIUM PINNIPEDIORUM SP. NOV. ISOLATED FROM A
HARBOUR SEAL. SAMMRA,
O., BALBUTSKAYA, A., UELBEGI-MOHYLA H., NAGIB, S., LAEMMLER C., KAEMPFER,
P, GLAESER,
S.P., GOLKE, J., BUSSE, H.J., PRENGER-BEMINGHOFF, E., SIEBERT, U.,
ABDULMAWJOOD,
A., KLEIN, G. 2015. INT. J. SYST. EVOL. MICROBIOL. 65,
4539-4543.............................120
APENDIX 11 ARCANOBACTERIUM WILHELMAE SP. NOV., ISOLATED THE GENITAL
TRACT OF A RHINOCEROS
(RHINOCEROS UNICORNIS). SAMMRA, O., RAU, J., WICKHORST, J.-P., AISSAHEN,
M.,
HASSAN, A.A., LAEMMLER C., KAEMPFER, P, GLAESER, S.P., BUSSE, H.-J.,
KLEINHAGAUER, T.,
KNAUF-WITZENS, T., PRENGER-BEMINGHOFF, E., ABDULMAWJOOD, A., KLEIN, G.
2017. INT.
J. SYST. EVOL. MICROBIOL, DOI 10.1099/IJSEM.0.001784
..............................................
133
CHAPTER 4 -
DISCUSSION.......................................................................................................................
147
CHAPTER 5 -
SUMMARY.........................................................................................................................
169
CHAPTER 6 -
ZUSAMMENFASSUNG...........................................................................................................170
CHAPTER 7 -
REFERENCES.......................................................................................................................
172
CHAPTER 8 -
ACKNOWLEDGMENT...........................................................................................................
235
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| spelling | Sammra, Osama Verfasser (DE-588)1164026992 aut Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species eingereicht von Osama Sammra Pheno- and genotyping of Arcanobacterium 1. Auflage Giessen VVB Laufersweiler Verlag 2018 235 Seiten Illustrationen, Diagramme txt rdacontent n rdamedia nc rdacarrier Edition scientifique Dissertation Justus-Liebig-Universität Gießen 2018 Arcanobacterium cabt biochemistry cabt genetics cabt research cabt DNA cabt (DE-588)4113937-9 Hochschulschrift gnd-content DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=030880301&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Sammra, Osama Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species Arcanobacterium cabt biochemistry cabt genetics cabt research cabt DNA cabt |
| subject_GND | (DE-588)4113937-9 |
| title | Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species |
| title_alt | Pheno- and genotyping of Arcanobacterium |
| title_auth | Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species |
| title_exact_search | Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species |
| title_full | Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species eingereicht von Osama Sammra |
| title_fullStr | Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species eingereicht von Osama Sammra |
| title_full_unstemmed | Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species eingereicht von Osama Sammra |
| title_short | Phenotypic and genotypic characteristics of bacteria of genus Arcanobacterium with the emphasis on the characterization of four newly described Arcanobacterium species |
| title_sort | phenotypic and genotypic characteristics of bacteria of genus arcanobacterium with the emphasis on the characterization of four newly described arcanobacterium species |
| topic | Arcanobacterium cabt biochemistry cabt genetics cabt research cabt DNA cabt |
| topic_facet | Arcanobacterium biochemistry genetics research DNA Hochschulschrift |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=030880301&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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