Current proteomic approaches applied to brain function:
Gespeichert in:
| Weitere Verfasser: | , |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
New York, NY, U.S.A.
Humana Press
[2017]
|
| Schriftenreihe: | Neuromethods
127 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis Klappentext |
| Beschreibung: | xvi, 360 Seiten Illustrationen |
| ISBN: | 9781493971183 |
Internformat
MARC
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| 245 | 1 | 0 | |a Current proteomic approaches applied to brain function |c edited by Enrique Santamaría and Joaquín Fernández-Irigoyen, Clinical Neuroproteomics Unit, Navarrabiomed, Navarra Health Department, Public University of Navarra, Proteored-Institute of Health Carlos III (ISCIII), Navarra Institute for Health Research (IdiSNA), Pamplona, Spain |
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Datensatz im Suchindex
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| adam_text | Contents
Preface to the Series.........................................„............ y
Preface.................................................................... ini
Contributors................................................................. xiU
Part I Introduction
1 Brain Proteomics: Decoding Neuroproteomes Using Mass
Spectrometry............................................................... 3
Joaquín Perná ndez-Irigoyen and Enrique Santamaría
Part II Labeling Methods in Neuroproteomics
2 Applications of Amine-Reactive Tandem Mass Tags (TMT)
in Human Neuroproteomics................................................... 11
Linnéa Lagerstedt, Leire Azttrmendi, and Jean-Charles Sanchez
3 Application of Isobaric Tags for Relative and Absolute Quantitation
(iTRAQ) to Monitor Olfactory Proteomes During Alzheimer’s
Disease Progression....................................................... 29
Andrea González Morales, Mercedes Lachen-Montes, María Ibáñez-Vea,
Enrique Santamaría, and Joaquín Perná ndez-Irigoyen
4 Protein Microarrays in Neurodegenerative Diseases......................... 43
Pablo San Segundo-Acosta, María Garranzo-Asensio, Ana Montero-Calle,
Carmen Oeo-Santos, Mayte Villalba, Ana Guzman -Aranguez,
and Rodrigo Barderas
Part III Label-Free Methods in Neuroproteomics
5 Comprehensive Shotgun Proteomic Analyses of Oligodendrocytes
Using Ion Mobility and Data-Independent Acquisition....................... 65
Juliana S. Cassoli and Daniel Ma r ti ns-de -So uza
6 Nontargeted Brain Lipidomic Profiling Performed
by UPLC-ESI-qToF-MS/MS.................................................... 75
Alba Naudi, Rosanna Cabré, Mar tona Jovê, and Reinald Pamplona
7 Methods for Human Olfactory Bulb Tissue Studies Using Peptide/Protein
MALDI-TOF Imaging Mass Spectrometry (MALDI-IMS)......................... 91
Ibón lloro, Joaquín Fernández-Irigoyen, Ir ai de Escobes, Mikel Azkargorta,
Enrique Santamaría, and Felix Elortza
8 Neuroproteomics Using Short GeLC-SWATH: From the Evaluation
of Proteome Changes to the Clarification of Protein Function........... 107
Sandra L Anjo, Cátia Santa, Susana C. Saraiva, Karolina Freitas,
Faraj Barah, Bruno Carreira, Inés Araujo, and Bruno Manadas
IX
X
Contents
Part IV Mass Spectrometry-Based Neuroproteomics to Analyze
Post-Translational Modificiations
9 Analysis of Brain Phosphoproteome Using Titanium Dioxide
Enrichment and High-Resolution LC-MS/MS................................... 141
Jeffrey M, Sifford, Haiyan Tan, Hong Wang, and Junmin Peng
10 N-Glycomics and N-Glycoproteomics of Human Cerebrospinal Fluid ......... 161
Sophie Cholety Arnaud Goyallon, Christophe Junot, and François Fenaille
11 In Vivo Strategies to Isolate and Characterize the Neuronal
Ubiquitinated Proteome.................................................... 179
Juanma Ramirez, Nagove Elu, Ait or Martinez, Benoit Lectez,
and Ugo Mayor
12 Characterization of the Phosphoproteome and Sialoproteome
in Brain Tissues by Mass Spectrometry..................................... 191
Maria Ibdnez-Vea, Stefan /. Kempf and Martin R. Larsen
13 Proteomic Analysis of SUMOylation in the Post-ischemic Brain.............. 207
J. Will Thompson, Meng Jiang, and Wei Tang
14 S-Nitrosylation in Alzheimer’s Disease Using Oxidized
Cysteine-Selective cPILOT................................................. 225
Ryan R. Dyer, Liqing Gu, and Rend A.S. Robinson
Part V Subcellular Neuroproteomics
15 Proteomic Analysis of Extracellular Vesicles in Neurological Diseases..... 245
Matías Saenz-Cuesta, Enrique Santamaria, Joaquin Fernandez-Irigoyen,
and David Otaegui
16 Quantitative In-Depth Profiling of the Postsynaptic Density Proteome
to Understand the Molecular Mechanisms Governing Synaptic
Physiology and Pathology................................................... 255
Rita Reig-Viader and Alex Bayes
17 Nuclear Proteomics for Exploring MK-801-Treated Oligodendrocytes
to Better Understand Schizophrenia......................................... 281
Aline G. Santana, Gitiliana S. Zuccoli, Veronica M. Saia-Cereda,
Juliana S. Cassoli, and Daniel Martins-de-Souza
18 Localized Proteomics of Individual Neurons Isolated from
Formalin-Fixed, Paraffin-Embedded Tissue Sections Using Laser
Capture Microdissection................................................ 289
Eleanor Drummond, Shruti Nayak, Beatrix Ueberheide,
and Thomas Wisniewski
Contents xi
Part VI Bioinformatics
19 Creation of Reusable Bioinformatics Workflows for Reproducible
Analysis of LC-MS Proteomics Data.......................................... 305
Julian Uskoreit, Maike Ahrens, Katalin Barkovits, Katrin MarcttSy
and Martin Eisenacher
20 Integration of Transcriptomic and Proteomic Data for Disease Insights...... 325
Ravi Sirdeshmukhy Savita Jayaram, Manoj Kumar Gupta,
Pranali Sonpatkiy Manika Sinjjh, Raksha A. Ganeshy
Chaitra B. Amareshay and Nameeta Shah
Index............................................................................ 357
Neuromethods 127
Wolfgang Walz, Series Editor
Enrique Santamaria · Joaquin Fernandez-lrigoyen Editors
Current Proteomic Approaches Applied to Brain Function
This volume focuses on protein analysis covering a wide spectrum of the utility of mass spectrom-
etry within neurobiological disciplines. The chapters in this book discuss label (iTRAQ, TMT,
protein arrays) and labelfree workflows (SWATH, MALDI Imaging, and label-free quantitation).
Other chapters look at experimental strategies targeted to the identification and quantitation of
specific lipids and post-translational modifications, as well as proteomic workflows that focus
on characterization of subcellular proteomes. The last few chapters in the book describe vari-
ous bioinformatics pipelines used to analyze the molecular data derived from high-throughput
transcriptomic and proteomic experiments on brain tissue. The Neuromethods series offers
chapters with key advice and procedure specifics to empower the readers to successfully achieve
their own scientific and experimental goals.
Thorough and comprehensive, Current Proteomic Approaches Applied to Brain Function is a
valuable resource for graduate students and postdoctoral fellows interested in neuroproteomics,
as well as researchers looking for further insight into the growing field of mass spectrometry in
neuroscience.
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| series | Neuromethods |
| series2 | Neuromethods Springer protocols |
| spelling | Current proteomic approaches applied to brain function edited by Enrique Santamaría and Joaquín Fernández-Irigoyen, Clinical Neuroproteomics Unit, Navarrabiomed, Navarra Health Department, Public University of Navarra, Proteored-Institute of Health Carlos III (ISCIII), Navarra Institute for Health Research (IdiSNA), Pamplona, Spain New York, NY, U.S.A. Humana Press [2017] xvi, 360 Seiten Illustrationen txt rdacontent n rdamedia nc rdacarrier Neuromethods 127 Springer protocols Proteomanalyse (DE-588)4596545-6 gnd rswk-swf Zentralnervensystem (DE-588)4067637-7 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Zentralnervensystem (DE-588)4067637-7 s Proteomanalyse (DE-588)4596545-6 s DE-604 Santamaría, Enrique edt Fernández-Irigoyen, Joaquín edt Erscheint auch als Online-Ausgabe 978-1-4939-7119-0 Neuromethods 127 (DE-604)BV008920602 127 Digitalisierung UB Regensburg - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=029826289&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis Digitalisierung UB Regensburg - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=029826289&sequence=000002&line_number=0002&func_code=DB_RECORDS&service_type=MEDIA Klappentext |
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| title | Current proteomic approaches applied to brain function |
| title_auth | Current proteomic approaches applied to brain function |
| title_exact_search | Current proteomic approaches applied to brain function |
| title_full | Current proteomic approaches applied to brain function edited by Enrique Santamaría and Joaquín Fernández-Irigoyen, Clinical Neuroproteomics Unit, Navarrabiomed, Navarra Health Department, Public University of Navarra, Proteored-Institute of Health Carlos III (ISCIII), Navarra Institute for Health Research (IdiSNA), Pamplona, Spain |
| title_fullStr | Current proteomic approaches applied to brain function edited by Enrique Santamaría and Joaquín Fernández-Irigoyen, Clinical Neuroproteomics Unit, Navarrabiomed, Navarra Health Department, Public University of Navarra, Proteored-Institute of Health Carlos III (ISCIII), Navarra Institute for Health Research (IdiSNA), Pamplona, Spain |
| title_full_unstemmed | Current proteomic approaches applied to brain function edited by Enrique Santamaría and Joaquín Fernández-Irigoyen, Clinical Neuroproteomics Unit, Navarrabiomed, Navarra Health Department, Public University of Navarra, Proteored-Institute of Health Carlos III (ISCIII), Navarra Institute for Health Research (IdiSNA), Pamplona, Spain |
| title_short | Current proteomic approaches applied to brain function |
| title_sort | current proteomic approaches applied to brain function |
| topic | Proteomanalyse (DE-588)4596545-6 gnd Zentralnervensystem (DE-588)4067637-7 gnd |
| topic_facet | Proteomanalyse Zentralnervensystem Aufsatzsammlung |
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| volume_link | (DE-604)BV008920602 |
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