RNA structure determination: methods and protocols
Gespeichert in:
| Weitere Verfasser: | , |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
New York
Humana Press
[2016]
|
| Schriftenreihe: | Methods in molecular biology
1490 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | xv, 283 Seiten Illustrationen, Diagramme 25.4 cm x 17.8 cm |
| ISBN: | 1493964313 9781493964314 |
Internformat
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Datensatz im Suchindex
| _version_ | 1804176571442921472 |
|---|---|
| adam_text | Titel: RNA structure determination
Autor: Turner, Douglas H
Jahr: 2016
Contents
Preface.......................................................... p
Contributors.......................................................... xiii
1 Crumple: An Efficient Tool to Explore Thoroughly the RNA
Folding Landscape............................................. 1
Ivan Guerra and Susan J. Schroeder
2 Secondary Structure Prediction of Single Sequences Using RNAstructure .... 15
Zhenjiang Zech Xu and David H. Mathews
3 Prediction of Secondary Structures Conserved in Multiple RNA Sequences... 35
Zhenjiang Zech Xu and David H. Mathews
4 Predicting RNA-RNA Interactions Using RNAstructure................. 51
Laura DiChiacchio and David H. Mathews
5 A Method to Predict the Structure and Stability of RNA/RNA Complexes... 63
Xiaojun Xu and Shi-Jie Chen
6 STarMir Tools for Prediction of microRNA Binding Sites................ 73
Shaveta Kanoria, William Rennie, Chaochun Liu, C. Steven Carmack,
Jun La, and Ye Ding
7 Traditional Chemical Mapping of RNA Structure in vitro and in vivo....... 83
Pierre Fechter, Delphine Parmentier, ZongFu Wu, Olivier Fuchsbauer,
Pascale Romby, and Stefano Marzi
8 High-Throughput Nuclease Probing of RNA Structures Using FragSeq..... 105
Andrew V. Uzilov and Jason G. Underwood
9 Mapping RNA Structure in vitro with SHAPE Chemistry
and Next-Generation Sequencing (SHAPE-Seq)....................... 135
Kyle E. Watters and Julius B. Lucks
10 Experiment-Assisted Secondary Structure Prediction with RNAstructure..... 163
Zhenjiang Zech Xu and David H. Mathews
11 RNA Secondary Structure Determination by NMR..................... 177
Jonathan L. Chen, Stanislav Bellaousov, and Douglas H. Turner
12 Modeling Small Noncanonical RNA Motifs with the Rosetta
FARFAR Server............................................... 187
Joseph D. Yesselman and Rhiju Das
13 Automated RNA 3D Structure Prediction with RNAComposer............ 199
Marcin Biesiada, Katarzyna J. Purzycka, Marta Szachniuk, Jacek Blazewicz,
and Ryszard W. Adamiak
14 RNA 3D Structure Modeling by Combination of Template-Based
Method ModeRNA, Template-Free Folding with SimRNA,
and Refinement with QRNAS..................................... 217
Pawel Piatkowski, Joanna M. Kasprzak, Deepak Kumar, Marcin Magnus,
Grzegorz Chojnowski, and Janusz M. Bujnicki
xi
xii
Contents
15 Exploring Alternative RNA Structure Sets Using
MC-Flashfold and db2cm........................................ 237
Paul Dallaire and Francois Major
16 NMR Methods for Characterization of RNA Secondary Structure.......... 253
Scott D. Kennedy
17 The Quick and the Dead: A Guide to Fast Phasing of Small Ribozyme
and Riboswitch Crystal Structures.................................. 265
Jermaine L. Jenkins and Joseph E. Wedekind
Index............................................................... 281
|
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| discipline | Biologie |
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| indexdate | 2024-07-10T07:34:18Z |
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| publisher | Humana Press |
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| series | Methods in molecular biology |
| series2 | Methods in molecular biology Springer protocols |
| spelling | RNA structure determination methods and protocols edited by Douglas H. Turner, David H. Mathews New York Humana Press [2016] xv, 283 Seiten Illustrationen, Diagramme 25.4 cm x 17.8 cm txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 1490 Springer protocols Strukturaufklärung (DE-588)4183788-5 gnd rswk-swf RNS (DE-588)4076759-0 gnd rswk-swf Modellierung (DE-588)4170297-9 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content RNS (DE-588)4076759-0 s Strukturaufklärung (DE-588)4183788-5 s Modellierung (DE-588)4170297-9 s DE-604 Turner, Douglas H. edt Mathews, David H. edt Springer Science + Business Media LLC (DE-588)1065492340 pbl Erscheint auch als Online-Ausgabe 978-1-4939-6433-8 Methods in molecular biology 1490 (DE-604)BV035362695 1490 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=029169281&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | RNA structure determination methods and protocols Methods in molecular biology Strukturaufklärung (DE-588)4183788-5 gnd RNS (DE-588)4076759-0 gnd Modellierung (DE-588)4170297-9 gnd |
| subject_GND | (DE-588)4183788-5 (DE-588)4076759-0 (DE-588)4170297-9 (DE-588)4143413-4 |
| title | RNA structure determination methods and protocols |
| title_auth | RNA structure determination methods and protocols |
| title_exact_search | RNA structure determination methods and protocols |
| title_full | RNA structure determination methods and protocols edited by Douglas H. Turner, David H. Mathews |
| title_fullStr | RNA structure determination methods and protocols edited by Douglas H. Turner, David H. Mathews |
| title_full_unstemmed | RNA structure determination methods and protocols edited by Douglas H. Turner, David H. Mathews |
| title_short | RNA structure determination |
| title_sort | rna structure determination methods and protocols |
| title_sub | methods and protocols |
| topic | Strukturaufklärung (DE-588)4183788-5 gnd RNS (DE-588)4076759-0 gnd Modellierung (DE-588)4170297-9 gnd |
| topic_facet | Strukturaufklärung RNS Modellierung Aufsatzsammlung |
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