Proceedings of the 6th Asia-Pacific Bioinformatics Conference: Kyoto, Japan, 14-17 January 2008
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Bibliographische Detailangaben
Körperschaft: Asia-Pacific Bioinformatics Conference < 2008, Kyoto, Japan> (VerfasserIn)
Format: Elektronisch E-Book
Sprache:English
Veröffentlicht: London Imperial College Press c2008
Schriftenreihe:Series on advances in bioinformatics and computational biology v. 6
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Beschreibung:Includes bibliographical references and index
Recent progress in phylogenetic combinatorics / Andreas Dress -- KEGG for medical and pharmaceutical applications / Minoru Kanehisa -- Protein interactions extracted from Genomes and papers / Alfonso Valencia -- String kernels with feature selection for SVM protein classification / Wen-Yun Yang and Bao-Liang Lu -- Predicting nucleolar proteins using support-vector machines / Mikael Boden -- Supervised ensembles of prediction methods for subcellular localization / Johannes A[beta]falg ... [et al.] -- Chemical compound classification with automatically mined structure patterns / Aaron M. Smalter, J. Huan and Gerald H. Lushington -- Structure-approximating design of stable proteins in 2D HP model fortified by cysteine monomers / Alireza Hadj Khodabakhshi ... [et al.] -- Discrimination of native folds using network properties of protein structures / Alper Kucukural, O. Ugur Sezerman and Aytul Ercil --
- Interacting amino acid preferences of 3D pattern pairs at the binding sites of transient and obligate protein complexes / Suryani Lukman ... [et al.] -- Structural descriptors of protein-protein binding sites / Oliver Sander ... [et al.] -- A memory efficient algorithm for structural alignment of RNAs with embedded simple pseudoknots / Thomas Wong ... [et al.] -- A novel method for reducing computational complexity of whole genome sequence alignment / Ryuichiro Nakato and Osamu Gotoh -- fRMSDAlign: protein sequence alignment using predicted local structure information for pairs with low sequence identity / Huzefa Rangwala and George Karypis -- Run probability of high-order seed patterns and its applications to finding good transition seeds / Jialiang Yang and Louxin Zhang -- Seed optimization is no easier than optimal Golomb ruler design / Bin Ma and Hongyi Yao --
- Integrating hierarchical controlled vocabularies with OWL ontology: a case study from the domain of molecular interactions / Melissa J. Davis ... [et al.] -- Semantic similarity definition over gene ontology by further mining of the information content / Yuan- Peng Li and Bao- Liang Lu -- From text to pathway: corpus annotation for knowledge acquisition from biomedical literature / Jan-Dong Kim ... [et al.] -- Classification of protein sequences based on word segmentation methods / Yang Yang, Bao-Liang Lu and Wen-Yun Yang -- Analysis of structural strand asymmetry in non-coding RNAs / Jaayu Wen, Brian J. Parker and Georg F. Weiller -- Finding non-coding RNAs through genome-scale clustering / Huei-Hun Tseng ... [et al.] -- A fixed-parameter approach for weighted cluster editing / Sebastian Bocker ... [et al.] -- Image compression-based approach to measuring the similarity of protein structures / Morihiro Hayashida and Tatsuya Akutsu --
- Genome halving with double cut and join / Robert Warren and David Sankoff -- Phylogenetic reconstruction from complete gene orders of whole genomes / Krister M. Swenson ... [et al.] -- SPR-based tree reconciliation: non-binary trees and multiple solutions / Cuong Than and Luay Nakhleh -- Alignment of minisatellite maps: a minimum spanning tree-based approach / Mohamed I. Abouelhoda ... [et al.] -- Metabolic pathway alignment (M-Pal) reveals diversity and alternatives in conserved networks / Yunlei Li ... [et al.] -- Automatic modeling of signal pathways from protein-protein interaction networks / Xingming Zhao ... [et al.] -- Simultaneously segmenting multiple gene expression time courses by analyzing cluster dynamics / Satish Tadepall ... [et al.] -- Symbolic approaches for finding control strategies in boolean networks / Christopher James Langmead and Sumit Kumar Jha --
- Estimation of population allele frequencies from small samples containing multiple generations / Dmitry A. Konovalov and Dik Heg -- Linear time probabilistic algorithms for the singular haplotype reconstruction problem from SNP fragments / Zhixiang Chen ... [et al.] -- Optimal algorithm for finding DNA motifs with nucleotide adjacent dependency / Francis Y. L. Chin ... [et al.] -- Primer selection methods for detection of genomic inversions and deletions via PAMP / Bhaskar DasGupta, Jin Jun and Ion I. Mandoiu -- GenePC and ASPIC integrate gene predictions with expressed sequence alignments to predict alternative transcripts / Tyler S. Alioto ... [et al.] -- Comparing and analysing gene expression patterns across animal species using 4DXpress / Yannick Haudry ... [et al.] -- Near-sigmoid modeling to simultaneously profile genome-wide DNA replication timing and efficiency in single DNA replication microarray studies / Juntao Li ... [et al.]
Beschreibung:1 Online-Ressource (xv, 394 p.)
ISBN:1848161085
1848161093
9781848161085
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