Genomic Perl: from bioinformatics basics to working code
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Bibliographische Detailangaben
1. Verfasser: Dwyer, Rex A. (VerfasserIn)
Format: Elektronisch E-Book
Sprache:English
Veröffentlicht: Cambridge, UK Cambridge University Press 2003
Schlagworte:
Online-Zugang:FAW01
FAW02
Volltext
Beschreibung:Includes bibliographical references (pages 318-323) and index
The Central Dogma -- - DNA and RNA -- - Chromosomes -- - Proteins -- - The Central Dogma -- - Transcription and Translation in Perl -- - RNA Secondary Structure -- - Messenger and Catalytic RNA -- - Levels of RNA Structure -- - Constraints on Secondary Structure -- - RNA Secondary Structures in Perl -- - Counting Hydrogen Bonds -- - Folding RNA -- - Comparing DNA Sequences -- - DNA Sequencing and Sequence Assembly -- - Alignments and Similarity -- - Alignment and Similarity in Perl -- - Predicting Species: Statistical Models -- - Perl Subroutine Libraries -- - Species Prediction in Perl -- - Substitution Matrices for Amino Acids -- - More on Homology -- - Deriving Substitution Matrices from Alignments -- - Substitution Matrices in Perl -- - The PAM Matrices -- - PAM Matrices in Perl -- - Sequence Databases -- - FASTA Format -- - GenBank Format -- - GenBank's Feature Locations -- - Reading Sequence Files in Perl -- - Object-Oriented Programming in Perl -- - The SimpleReader Class -- - Hiding File Formats with Method Inheritance -- - Local Alignment and the BLAST Heuristic -- - The Smith-Waterman Algorithm -- - The BLAST Heuristic -- - Preprocessing the Query String -- - Scanning the Target String -- - Implementing BLAST in Perl -- - Statistics of BLAST Database Searches -- - BLAST Scores for Random DNA -- - BLAST Scores for Random Residues -- - BLAST Statistics in Perl -- - Interpreting BLAST Output -- - Multiple Sequence Alignment I -- - Extending the Needleman-Wunsch Algorithm -- - NP-Completeness -- - Alignment Merging: A Building Block for Heuristics -- - Merging Alignments in Perl -- - Finding a Good Merge Order
Beschreibung:1 Online-Ressource (xvii, 334 pages)
ISBN:0511057067
0511063393
052180177X
1139164767
9780511057069
9780511063398
9780521801775
9781139164764

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