Neuronal cytoskeleton, motor proteins, and organelle trafficking in the axon:
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Amsterdam
Elsevier
2016
|
| Ausgabe: | First edition |
| Schriftenreihe: | Methods in cell biology
Volume 131 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XXII, 511 Seiten, 15 ungezählte Seiten Illustrationen, Diagramme |
| ISBN: | 9780128033449 |
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Datensatz im Suchindex
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| adam_text | Contents
Contributors.........................................................xiii
Preface..............................................................xxi
CHAPTER 1 Axonal Transport: The Orderly Motion of Axonal
Structures...............................................i
Mark M. Black
1. Pulse-Labeling Studies of Axonal Transport..............2
2. Live-Cell Imaging of Axonal Transport...................7
3. Summary.............................................. 15
References..............................................15
CHAPTER 2 Live-cell Imaging of Neurofilament Transport
in Cultured Neurons.....................................21
Atsuko Uchida, Paula C. Monsma, J. Daniel Fenn,
Anthony Brown
Introduction............................................23
1. Culturing Neurons.......................................25
2. Neurofilament Fusion Proteins..........................44
3. Transfecting Neurons..*................................49
4. Strategies for Observing Movement......................57
5. Live-Cell Imaging......................................65
6. Software and Analysis..................................78
7. Summary.................................................86
Acknowledgments...................................... 87
References..............................................87
CHAPTER 3 Axonal Actin in Action; Imaging Actin Dynamics
in Neurons......................................... ...91
Kelsey Ladt, Archan Ganguly, Subhojit Roy
Introduction............................................92
1. Microscope Setup for Live Imaging......................93
2. Preparation of Neurons for Imaging.....................94
3. Imaging Axonal Actin...................................95
Acknowledgments........................................105
References............................................ 105
V
Contents
CHAPTER 4 Live Imaging of Microtubule Dynamics in
Organotypic Hippocampal Slice Cultures.................107
Philipp Schatzle, Lukas C. Kapitein, Casper C. Hoogenraad
Introduction...........................................108
1. Expression of MT -fTIP Markers Using Lentivirus.......110
2. Preparing Organotypic Slice Cultures..................114
3. Live Cell Imaging.....................................117
4. Data Processing and Analysis with FIJI................119
Conclusion.............................................123
Acknowledgments........................................123
Supplementary Data.....................................123
References.............................................124
CHAPTER 5 Studying Neuronal Microtubule Organization
and Microtubule-associated Proteins Using
Single Molecule Localization Microscopy................127
Anael Chazeau, Eugene A. Katrukha, Casper C. Hoogenraad,
Lukas C. Kapitein
Introduction...........................................128
1. Rationale and Results.................................130
2. Material and Methods: Sample Preparation..............135
3. Material and Methods: Image Acquisition and Analysis.139
Conclusion and Perspectives............................143
Acknowledgments........................................144
References.............................................144
CHAPTER 6 The Use of Proteomic Analysis to Study
Trafficking Defects in Axons...........................151
Xiaoqin Fu, Kristy J. Brown, Sree Rayavarapu,
Kanneboyina Nagaraju, Judy S. Liu
Introduction...........................................152
1. Method................................................153
2. Mass Spectrometry.....................................154
3. Results and Conclusion................................156
Acknowledgments........................................160
References.............................................160
Contents vii
CHAPTER 7 Using siRNA to Study Microtubule-related
Proteins in Cultured Neurons...........................163
Lanfranco Leo, Wenqian Yu, Peter W. Baas
Introduction...........................................163
1. Choosing siRNA....................................... 165
2. How to Introduce siRNA into Primary Cultured Neurons. 165
3. How Long Does the siRNA Last in a Cell and What is
the Half-Life of the Protein?..........................166
4. Replating or Not......................................169
5. Off-target Effects—What to Do?........................170
6. Protocol............................................. 172
References.............................................174
CHAPTER 8 Optimization of Cerebellar Purkinje Neuron
Cultures and Development of a Plasmid-based
Method for Purkinje Neuron-specific,
miRNA-mediated Protein Knockdown.......................177
C.J. Alexander, i.A. Hammer, III
Introduction.......................................... 178
1. Material and Methods................................. 180
2. Results...............................................190
Concluding Remarks.....................................194
References............................................ 194
CHAPTER 9 Biochemical Analysis of Axon-specific
Phosphorylation Events Using Isolated Squid
Axoplasms..............................................199
Minsu Kang, Lisa Baker, Yuyu Song, Scott T. Brady,
Gerardo Morfini
Introduction...........................................200
1. Methods...............................................202
Conclusions............................................214
Acknowledgments........................................214
References........................................... 214
CHAPTER 10 Analyzing Kinesin Motor Domain Translocation in
Cultured Hippocampal Neurons...........................217
Rui Yang, Marvin Bentley, Chung-Fang Huang, Gary Banker
Introduction...........................................218
1. Using This Assay to Characterize Kinesin Translocation in
Neurons..................................................221
viii Contents
2. Using This Assay to Detect Changes in Microtubules
that Influence Kinesin Translocation....................224
3. Protocols..............................................225
4. Materials and Equipment................................229
Acknowledgments.........................................229
References..............................................229
CHAPTER 11 Imaging and Quantitative Analysis of Cytokinesis
in Developing Brains of Kinesin-6 Mutant Mice.........233
Kerstin M. Janisch, Noelle D. Dwyer
Introduction............................................234
1. Methods................................................236
2. Results/Discussion.....................................248
Conclusion..............................................250
Acknowledgments.........................................250
References..............................................250
CHAPTER 12 Live Cell Imaging of Cytoplasmic Dynein
Movement in Transfected Embryonic Rat
Neurons.................................................253
Mitchell W. Ross, David J. Mitchell, John C. Cain,
Kiev R. Blasier, K. Kevin Pfister
Introduction............................................254
1. Methods.................................................255
Summary.................................................264
Acknowledgments.........................................265
References..............................................265
CHAPTER 13 Live-cell Imaging of Retrograde Transport
Initiation in Primary Neurons...........................269
Jeffrey J. Nirschl, Erika L.F. Holzbaur
Introduction............................................270
1. Methods................................................271
Conclusions.............................................274
Acknowledgments.........................................274
References..............................................275
Contents
IX
CHAPTER 14 Methods to Identify and Analyze Gene Products
Involved in Neuronal Intracellular Transport
Using Drosophila...................................... 277
Amanda L Neisch, Adam W. Avery, James B. Machamer,
Min-gang Li, Thomas S. Hays
Introduction............................................278
1. Primary Screen Using RNAi to Identify Genes Important
for Intracellular Transport.............................281
2. Analyses in Motoneurons for Axonal Transport Defects.283
3. Analysis of Disrupted Intracellular Transport in
Class IV Dendritic Arborization Neurons.................299
Conclusion..............................................305
Acknowledgments.........................................306
References..............................................306
CHAPTER 15 In Vivo Analysis of Axonal Transport in Zebrafish..3H
Catherine M. Drerup, Alex V. Nechiporuk
Introduction............................................312
1. Methods................................................314
Conclusions.............................................326
Acknowledgments.........................................328
Supplementary Data......................................328
References..............................................328
CHAPTER 16 Fast Axonal Transport in Isolated Axoplasm
From the Squid Giant Axon......................... ....331
Yuyu Song, Minsu Kang, Gerardo Morfini,
Scott T. Brady
Introduction.......................................... 332
1. Microscopy and Imaging.................................333
2. Preparation of Isolated Axoplasm.......................335
Summary.................................................345
Acknowledgments.........................................346
References............................................ 346
CHAPTER 17 Cellular and Subcellular Imaging of Motor
Protein-based Behavior in Embryonic Rat Brain.....349
Alexandre D. Baffet, Aurélie Carabalona, Tiago 1. Dantas,
David D. Doobin, Daniel i. Hu, Richard B. Vallee
Introduction............................................350
1. In Utero Electroporation...............................351
X
Contents
2. Brain Sample Preparation...............................355
3. Microscopy.............................................358
Conclusion..............................................361
Acknowledgments.........................................361
Competing Financial Interests...........................361
Supplementary Data......................................361
Unique Materials Appendix...............................362
References..............................................362
CHAPTER 18 Tracking Quantum-Dot Labeled Neurotropic Factors
Transport Along Primary Neuronal Axons in
Compartmental Microfluidic Chambers..................365
Shani Gluska, Michael Chein, Nimrod Rotem,
Ariel lonescu, Eran Perlson
Introduction............................................366
Step by Step Instruction................................367
1. Mold Fabrication.......................................369
2. PDMS Casting and Platform Assembly.....................374
3. Dorsal Root Ganglion Explant Culture...................376
4. Imaging Retrograde Axonal Transport....................378
5. Image Analysis.........................................379
6. Data Analysis..........................................383
Conclusion..............................................384
Acknowledgments.........................................385
Supplementary Data......................................385
References..............................................385
CHAPTER 19 Studying Endosomes in Cultured Neurons
by Live-cell Imaging....................................389
Zofia M. Lasiecka, Bettina Winckler
Introduction............................................390
1. Preparation of Samples for Live-Cell Imaging...........391
2. Imaging................................................403
3. Data Analysis..........................................406
Conclusion..............................................406
References..............................................406
Contents
XI
CHAPTER 20 Comparative Analysis of Axonal Transport
Markers in Primary Mammalian Neurons..................409
Eva Klinman, Erika L.F. Holzbaur
Introduction..........................................410
1. Selection of Cargo....................................411
2. Basics of Imaging.....................................414
3. Analysis of Transport.................................415
4. Axonal Cargos Demonstrate Distinct Patterns of Motility.415
Conclusion............................................422
Acknowledgments.......................................423
References............................................423
CHAPTER 21 Imaging Organelle Transport in Primary
Hippocampal Neurons Treated with Amyloid-^
Oligomers.............................................425
Kathlyn J. Gan, Michael A. Silverman
Introduction..........................................426
1. Methods...............................................433
2. Anticipated Results and Discussion....................441
Conclusion............................................445
Acknowledgments.......................................445
References............................................446
CHAPTER 22 Imaging of Motor-Dependent Transport in Neuronal
and Nonneuronal Cells at High Spatial and
Temporal Resolution...................................453
Julie Yi, Noopur V. Khobrekar, Tiago J. Oantas, Jie Zhou,
Richard B. Vallee
Introduction..........................................454
1. Preparing Cells for Microscopy........................454
2. Inhibition of Motor Protein Activity..................457
3. Microscopy/Imaging....................................459
4. Data Analysis.........................................461
Conclusions...........................................463
Acknowledgments.......................................463
Competing Financial Interests.........................463
Supplementary Data....................................463
References............................................463
xii Contents
CHAPTER 23 Isolation and Analyses of Axonal
Ribonucleoprotein Complexes...........................467
Ella Doron-Mandel, Stefanie Alber, Juan A. Oses,
Katalin F. Medzihradszky, Alma L. Burlingame,
Mike Fainzilber, Jeffery L. Twiss, Seung Joon Lee
Introduction..........................................468
1. Methods...............................................469
2. Discussion............................................481
Acknowledgments.......................................483
References............................................483
Volumes in Series....................................................487
Index................................................................501
|
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| spelling | Neuronal cytoskeleton, motor proteins, and organelle trafficking in the axon edited by K. Kevin Pfister First edition Amsterdam Elsevier 2016 XXII, 511 Seiten, 15 ungezählte Seiten Illustrationen, Diagramme txt rdacontent n rdamedia nc rdacarrier Methods in cell biology Volume 131 Kontraktile Proteine (DE-588)4275800-2 gnd rswk-swf Nervenzelle (DE-588)4041649-5 gnd rswk-swf Axon (DE-588)4200576-0 gnd rswk-swf Zellskelett (DE-588)4121944-2 gnd rswk-swf Membrantransport (DE-588)4038575-9 gnd rswk-swf Methode (DE-588)4038971-6 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Nervenzelle (DE-588)4041649-5 s Zellskelett (DE-588)4121944-2 s Kontraktile Proteine (DE-588)4275800-2 s Methode (DE-588)4038971-6 s DE-604 Axon (DE-588)4200576-0 s Membrantransport (DE-588)4038575-9 s b DE-604 Pfister, K. Kevin edt Methods in cell biology Volume 131 (DE-604)BV002534878 131 Digitalisierung UB Regensburg - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=028323183&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Neuronal cytoskeleton, motor proteins, and organelle trafficking in the axon Methods in cell biology Kontraktile Proteine (DE-588)4275800-2 gnd Nervenzelle (DE-588)4041649-5 gnd Axon (DE-588)4200576-0 gnd Zellskelett (DE-588)4121944-2 gnd Membrantransport (DE-588)4038575-9 gnd Methode (DE-588)4038971-6 gnd |
| subject_GND | (DE-588)4275800-2 (DE-588)4041649-5 (DE-588)4200576-0 (DE-588)4121944-2 (DE-588)4038575-9 (DE-588)4038971-6 (DE-588)4143413-4 |
| title | Neuronal cytoskeleton, motor proteins, and organelle trafficking in the axon |
| title_auth | Neuronal cytoskeleton, motor proteins, and organelle trafficking in the axon |
| title_exact_search | Neuronal cytoskeleton, motor proteins, and organelle trafficking in the axon |
| title_full | Neuronal cytoskeleton, motor proteins, and organelle trafficking in the axon edited by K. Kevin Pfister |
| title_fullStr | Neuronal cytoskeleton, motor proteins, and organelle trafficking in the axon edited by K. Kevin Pfister |
| title_full_unstemmed | Neuronal cytoskeleton, motor proteins, and organelle trafficking in the axon edited by K. Kevin Pfister |
| title_short | Neuronal cytoskeleton, motor proteins, and organelle trafficking in the axon |
| title_sort | neuronal cytoskeleton motor proteins and organelle trafficking in the axon |
| topic | Kontraktile Proteine (DE-588)4275800-2 gnd Nervenzelle (DE-588)4041649-5 gnd Axon (DE-588)4200576-0 gnd Zellskelett (DE-588)4121944-2 gnd Membrantransport (DE-588)4038575-9 gnd Methode (DE-588)4038971-6 gnd |
| topic_facet | Kontraktile Proteine Nervenzelle Axon Zellskelett Membrantransport Methode Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=028323183&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV002534878 |
| work_keys_str_mv | AT pfisterkkevin neuronalcytoskeletonmotorproteinsandorganelletraffickingintheaxon |