R packages: [organize, test, document, and share your code]
Gespeichert in:
| 1. Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Beijing [u.a.]
O'Reilly
2015
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| Ausgabe: | 1. ed. |
| Schlagworte: | |
| Online-Zugang: | Inhaltstext Cover Inhaltsverzeichnis |
| Beschreibung: | XIV, 182 S. Ill. |
| ISBN: | 9781491910597 |
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Datensatz im Suchindex
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| adam_text |
Titel: R Packages
Autor: Wickham, Hadley
Jahr: 2015
Table of Contents Preface. ix Part 1. Getting Started 1. Introduction. . 1 Philosophy 2 Getting Started 3 Conventions 4 Colophon 4 2. Package Structure. . 5 Naming Your Package 5 Requirements for a Name 5 Strategies for Creating a Name 5 Creating a Package 6 RStudio Projects 8 What Is an RStudio Project File? 9 What Is a Package? 11 Source Packages 11 Bundled Packages 12 Binary Packages 13 Installed Packages 14 In-Memory Packages 15 What Is a Library? 16
Part 1!. Package Components 3. RCode. 21 R Code Workflow 21 Organizing Your Functions 21 Code Style 22 Object Names 23 Spacing 24 Curly Braces 25 Line Length 25 Indentation 25 Assignment 26 Commenting Guidelines 26 Top-Level Code 27 Loading Code 27 The R Landscape 28 When You Do Need Side Effects 29 S4 Classes, Generics, and Methods 31 CRAN Notes 31 4. Package Metadata.33 Dependencies: What Does Your Package Need? 34 Versioning 36 Other Dependencies 36 Title and Description: What Does Your Package Do? 37 Author: Who Are You? 38 On CRAN 40 License: Who Can Use Your Package? 40 On CRAN 41 Version 41 Other Components 42 5. Object Documentation. 43 The Documentation Workflow 44 Alternative Documentation Workflow 46 Roxygen Comments 47 Documenting Functions 49 Documenting Datasets 51 Documenting Packages 51 Documenting Classes, Generics, and Methods 51 S3 51 iv I Table of Contents
S4 52 RC 53 Special Characters 54 Do Repeat Yourself 54 Inheriting Parameters from Other Functions 55 Documenting Multiple Functions in the Same File 55 Text Formatting Reference Sheet 56 Character Formatting 57 Links 57 Lists 57 Mathematics 58 Tables 58 6. Vignettes: Long-Form Documentation.59 Vignette Workflow 60 Metadata 61 Markdown 62 Sections 63 Lists 63 Inline Formatting 64 Tables 64 Code 64 Knitr 65 Options 66 Development Cycle 67 Advice for Writing Vignettes 68 Organization 68 CRAN Notes 69 Where to Go Next 69 7. Testing.71 Test Workflow 72 Test Structure 73 Expectations 74 Writing Tests 76 What to Test 77 Skipping a Test 77 Building Your Own Testing Tools 78 Test Files 80 CRAN Notes 80 Table of Contents | v
.81 Motivation 81 Search Path 82 The NAMESPACE 84 Workflow 86 Exports 86 S3 87 S4 88 RC 88 Data 88 Imports 88 R Functions 89 S3 89 S4 90 Compiled Functions 90 Q Fvtprnal Data. . 91 Exported Data 91 Documenting Datasets — 93 Internal Data 93 Raw Data 94 Other Data 94 CRAN Notes 94 10. Compiled Code. . 97 C++ 97 Workflow 98 Documentation 99 Exporting C++ Code 100 Importing C++ Code 100 Best Practices 100 C 101 Getting Started with .Call() 102 Getting Started with ,C() 103 Workflow 104 Exporting C Code 104 Importing C Code 106 Best Practices 106 Debugging Compiled Code 107 Makefiles 109 Other Languages 110 Licensing 110 vi | Table of Contents
Development Workflow 110 CRAN Issues 111 11. Installed Files.113 Package Citation 114 Other Languages 115 12. Other Components. 117 Demos 117 Partili. Best Practices 13. Git and GitHub. 121 RStudio, Git, and GitHub 122 Initial Setup 123 Creating a Local Git Repository 124 Seeing What’s Changed 126 Recording Changes 128 Best Practices for Commits 130 Ignoring Files 132 Undoing Mistakes 132 Synchronizing with GitHub 134 Benefits of Using GitHub 135 Working with Others 137 Issues 138 Branches 139 Making a Pull Request 140 Submitting a Pull Request to Another Repo 142 Reviewing and Accepting Pull Requests 144 Learning More 145 14. Automated Checking.147 Workflow 147 Checks 148 Check Metadata 148 Package Structure 149 Description 151 Namespace 152 RCode 153 Data 155 Documentation 156 Table of Contents | vii
Demos 138 Compiled Code 158 Tests 158 Vignettes 159 Checking After Every Commit with Travis 160 Basic Config 161 Other Uses 161 15. Releasing a Package. 163 Version Number 163 Backward Compatibility 164 The Submission Process 166 Test Environments 168 Check Results 169 Reverse Dependencies 169 CRAN Policies 170 Important Files 171 README.md 171 README.Rmd -172 NEWS.md 173 Release 173 On Failure 174 Binary Builds 175 Prepare for Next Version 176 Publicizing Your Package 176 Congratulations! 176 Index. 177 viii | Table of Contents |
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| author | Wickham, Hadley |
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| title_fullStr | R packages [organize, test, document, and share your code] Hadley Wickham |
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