Landscape genetics: concepts, methods, applications
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| Weitere Verfasser: | , , , |
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| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Chichester
Wiley Blackwell
2016
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| Online-Zugang: | Inhaltsverzeichnis Klappentext |
| Beschreibung: | xix, 264 Seiten Illustrationen, Diagramme, Karten |
| ISBN: | 9781118525289 9781118525296 |
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Datensatz im Suchindex
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| adam_text | CONTENTS
»
List of contributors, ix
Website, xi
Acknowledgments, xiii
Glossary, xv
1 INTRODUCTION TO LANDSCAPE
GENETICS - CONCEPTS, METHODS,
APPLICATIONS, 1
Niko Balkenhol, Samuel A. Cushman, Andrew Storfer,
and Lisette P. Waits
1.1 Introduction, 1
1.2 Defining landscape genetics, 2
1.3 The three analytical steps of landscape
genetics, 3
1.4 The interdisciplinary challenge of landscape
genetics, 3
1.5 Structure of this book - concepts, methods,
applications, 5
References, 6
PART 1: CONCEPTS
2 BASICS OF LANDSCAPE ECOLOGY: AN
INTRODUCTION TO LANDSCAPES AND
POPULATION PROCESSES FOR
LANDSCAPE GENETICISTS, 11
Samuel A. Cushman, Brad H. McRae, and Kevin McGarigal
2.1 Introduction, 11
2.2 How landscapes affect population genetic
processes, 12
2.3 Defining the landscape for landscape genetic
research, 16
2.4 Defining populations and characterizing
dispersal processes, 21
2.5 Putting it together: combinations of landscape
and population models, 24
2.6 Frameworks for delineating landscapes
and populations for landscape
genetics, 26
2.7 Current challenges and future
opportunities, 30
References, 30
3 BASICS OF POPULATION GENETICS:
QUANTIFYING NEUTRAL AND ADAPTIVE
GENETIC VARIATION FOR LANDSCAPE
GENETIC STUDIES, 35
Lisette P. Waits and Andrew Storfer
3.1 Introduction, 35
3.2 Overview of landscape influences on genetic
variation, 36
3.3 Overview of DNA types and molecular
methods, 38
3.4 Important population genetic models, 41
3.5 Measuring genetic diversity, 45
3.6 Evaluating genetic structure and detecting
barriers, 46
3.7 Estimating gene flow using indirect and direct
methods, 50
3.8 Conclusion and future directions, 52
References, 53
4 BASICS OF STUDY DESIGN: SAMPLING
LANDSCAPE HETEROGENEITY AND
GENETIC VARIATION FOR LANDSCAPE
GENETIC STUDIES, 58
Niko Balkenhol and Marie-Josée Fortin
4.1 Introduction, 58
4.2 Study design terminology used in this
chapter, 59
4.3 General study design considerations, 60
4.4 Considerations for landscape genetic study
design, 61
4.5 Current knowledge about study design effects
in landscape genetics, 66
Vi
Contents
4.6 Recommendations for optimal sampling
strategies in landscape genetics, 71
4.7 Conclusions and future directions, 73
References, 74
5 BASICS OF SPATIAL DATA ANALYSIS:
LINKING LANDSCAPE AND GENETIC
DATA FOR LANDSCAPE GENETIC
STUDIES, 77
Helene H. Wagner and Marie-Josée Fortin
5.1 Introduction, 77
5.2 How to model landscape effects on genetic
variation, 84
5.3 How to model isolation-by-distance, 93
5.4 Future directions, 95
Acknowledgments, 96
References, 96
PART 2: METHODS
6 SIMULATION MODELING IN LANDSCAPE
GENETICS, 101
Erin Landguth, Samuel A. Cushman,
and Niko Balkenhol
6.1 Introduction, 101
6.2 A brief overview of models and
simulations, 101
6.3 General benefits of simulation modeling, 102
6.4 Landscape genetic simulation modeling, 103
6.5 Examples of simulation modeling in landscape
genetics, 104
6.6 Designing and choosing landscape genetic
simulation models, 108
6.7 The future of landscape genetic simulation
modeling, 111
References, 111 7 * * * * *
7 CLUSTERING AND ASSIGNMENT METHODS
IN LANDSCAPE GENETICS, 114
Olivier François and Lisette P. Waits
7.1 Introduction, 114
7.2 Exploratory data analysis and model-based
clustering for population structure
analysis, 115
7.3 Spatially explicit methods in landscape
genetics, 119
7.4 Spatial EDA methods: spatial PCA and spatial
factor analysis, 119
7.5 Spatial MBC methods, 120
7.6 Habitat and environmental heterogeneity
models, 121
7.7 Discussion, 123
References, 125
8 RESISTANCE SURFACE MODELING IN
LANDSCAPE GENETICS, 129
Stephen F. Spear, Samuel A. Cushman, and Brad H. McRae
8.1 Introduction, 129
8.2 Techniques for parameterizing resistance
surfaces, 133
8.3 Estimating connectivity from resistance
surfaces, 137
8.4 Statistical validation of resistance
surfaces, 139
8.5 The future of the resistance surface in
landscape genetics, 142
8.6 Conclusions, 144
References, 144
9 GENOMIC APPROACHES IN LANDSCAPE
GENETICS, 149
Andrew Storfer, Michael F. Antolin, Stéphanie Manel,
Bryan K. Epperson, and Kim T. Scribner
9.1 Introduction, 149
9.2 Current landscape genomics methods, 150
9.3 General challenges in landscape
genomics, 157
9.4 Spatial autocorrelation, 157
9.5 Applications of landscape genomics to climate
change, 159
References, 160
10 GRAPH THEORY AND NETWORK MODELS
IN LANDSCAPE GENETICS, 165
Melanie Murphy, Rodney Dyer, and Samuel A, Cushman
10.1 Introduction, 165
10.2 Background on graph theory, 167
10.3 Landscape genetic applications, 170
10.4 Recommendations for using graph
approaches in landscape genetics, 175
10.5 Current research needs, 176
10.6 Conclusion - potential for application
of graphs for conservation, 176
References, 177
Contents vii
PART 3: APPLICATIONS
11 LANDSCAPES AND PLANT POPULATION
GENETICS, 183
Rodney }. Dyer
11.1 Introduction, 183
11.2 Contemporary population genetic
processes, 186
11.3 Historical population genetic processes, 190
11.4 Future research, 192
References, 194
12 APPLICATIONS OF LANDSCAPE
GENETICS TO CONNECTIVITY RESEARCH
IN TERRESTRIAL ANIMALS, 199
Lisette P. Waits, Samuel A. Cushman, and Steve F. Spear
12.1 Introduction, 199
12.2 General overview of terrestrial animal study
systems and research challenges, 199
12.3 Detecting barriers and defining corridors, 202
12.4 Evaluating population dynamics, 205
12.5 Detecting and predicting the response to
landscape change, 206
12.6 Common limitations of landscape genetic
studies involving terrestrial animals, 208
12.7 Testing ecological hypotheses about gene flow
in heterogeneous landscapes, 208
12.8 Knowledge gaps and future directions, 213
References, 214 13
13 WATERSCAPE GENETICS -
APPLICATIONS OF LANDSCAPE GENETICS
TO RIVERS, LAKES, AND SEAS, 220
Kimberly A. Selkoe, Kim T. Scribner, and
Heather M, Galindo
13.1 Introduction, 220
13.2 Understanding marine and freshwater
environments, 223
13.3 Typical research questions and
approaches, 229
13.4 Applications of landscape genetic
approaches, 234
13.5 Future directions: knowledge gaps, research
challenges, and limitations, 237
Acknowledgments, 238
References, 238
14 CURRENT STATUS, FUTURE
OPPORTUNITIES, AND REMAINING
CHALLENGES IN LANDSCAPE
GENETICS, 247
Niko Balkenhol, Samuel A, Cushman, Lisette P. Waits,
and Andrew Storfer
14.1 Introduction, 247
14.2 Conclusion 1: issues of scale need to be
considered, 248
14.3 Conclusion 2: sampling needs to
specifically target landscape genetic
questions, 248
14.4 Conclusion 3: choice of appropriate statistical
methods remains challenging, 249
14.5 Conclusion 4: simulations play a key role in
landscape genetics, 249
14.6 Conclusion 5: measures of genetic variation
are rarely developed specifically for
landscape genetics, 249
14.7 Conclusion 6: landscape resistance is just
one of the possible landscape-genetic
relationships, 250
14.8 Conclusion 7: genomics provides novel
opportunities, but also creates new
challenges, 250
14.9 Conclusion 8: the scope of landscape genetics
needs to expand, 251
14.10 Conclusion 9: specific hypotheses are rarely
stated in current landscape genetic
studies, 251
14.11 Conclusion 10: a comprehensive theory for
landscape genetics is currently
missing, 252
14.12 The future of landscape genetics, 252
References, 253
Index, 257
LANDSCAPE GENETICS:
CONCEPTS, METHODS,
APPLICATIONS
Edited by Niko Balkenhol, Samuel A. Cushman, Andrew T. Storfer, Lisette P. Waits
About the editors
Niko Balkenhol
Department of Wildlife Sciences, University of Gottingen, Germany
Samuel A. Cushman
Forest and Woodlands Ecosystems Program, Rocky Mountain Research Station,
United States Forest Service, AZ, USA
Andrew T. Storfer
School of Biological Sciences, Washington State University, WA, USA
Lisette P. Waits
Fish and Wildlife Sciences, University of Idaho, Moscow, ID, USA
Landscape genetics is an exciting and rapidly growing field, melding methods and theory from landscape ecology
and population genetics to address some of the most challenging and urgent ecological and evolutionary topics of
our time. Landscape genetic approaches now enable researchers to study in detail how environmental complexity
in space and time affect gene flow, genetic drift, and local adaptation. However, learning about the concepts and
methods underlying the field remains challenging due to the highly interdisciplinary nature of the field, which relies
on topics that have traditionally been treated separately in classes and textbooks.
In this edited volume, some of the leading experts in landscape genetics provide the first comprehensive
introduction to underlying concepts, commonly used methods, and current and future applications of landscape
genetics. Consistent with the interdisciplinary nature of the field, the book includes textbook-like chapters that
synthesize fundamental concepts and methods underlying landscape genetics (Part I), chapters on advanced topics
that deserve a more in-depth treatment (Part 2), and chapters illustrating the use of concepts and methods in
empirical applications (Part 3).
Aimed at beginning landscape geneticists and experienced researchers alike, this book will be helpful for all scientists
and practitioners interested in learning, teaching, and applying landscape genetics.
ISBN 978-1-118-52528-9
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| spelling | Landscape genetics concepts, methods, applications edited by Niko Balkenhol (Department of Wildlife Sciences, University of Göttingen, Germany), Samuel A. Cushman (Forest and Woodlands Ecosystems Program, Rocky Mountain Research Station, United States Forest Service, USA), Andrew T. Storfer (School of Biological Sciences, Washington State University, USA), Lisette P. Waits (Fish and Wildlife Sciences, University of Idaho, USA) Chichester Wiley Blackwell 2016 xix, 264 Seiten Illustrationen, Diagramme, Karten txt rdacontent n rdamedia nc rdacarrier Populationsgenetik (DE-588)4046804-5 gnd rswk-swf Landschaftsökologie (DE-588)4034352-2 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Landschaftsökologie (DE-588)4034352-2 s Populationsgenetik (DE-588)4046804-5 s DE-604 Balkenhol, Niko (DE-588)1078047804 edt Cushman, Samuel A. edt Storfer, Andrew edt Waits, Lisette P. edt Digitalisierung UB Bayreuth - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027543681&sequence=000003&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis Digitalisierung UB Bayreuth - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027543681&sequence=000004&line_number=0002&func_code=DB_RECORDS&service_type=MEDIA Klappentext |
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| title | Landscape genetics concepts, methods, applications |
| title_auth | Landscape genetics concepts, methods, applications |
| title_exact_search | Landscape genetics concepts, methods, applications |
| title_full | Landscape genetics concepts, methods, applications edited by Niko Balkenhol (Department of Wildlife Sciences, University of Göttingen, Germany), Samuel A. Cushman (Forest and Woodlands Ecosystems Program, Rocky Mountain Research Station, United States Forest Service, USA), Andrew T. Storfer (School of Biological Sciences, Washington State University, USA), Lisette P. Waits (Fish and Wildlife Sciences, University of Idaho, USA) |
| title_fullStr | Landscape genetics concepts, methods, applications edited by Niko Balkenhol (Department of Wildlife Sciences, University of Göttingen, Germany), Samuel A. Cushman (Forest and Woodlands Ecosystems Program, Rocky Mountain Research Station, United States Forest Service, USA), Andrew T. Storfer (School of Biological Sciences, Washington State University, USA), Lisette P. Waits (Fish and Wildlife Sciences, University of Idaho, USA) |
| title_full_unstemmed | Landscape genetics concepts, methods, applications edited by Niko Balkenhol (Department of Wildlife Sciences, University of Göttingen, Germany), Samuel A. Cushman (Forest and Woodlands Ecosystems Program, Rocky Mountain Research Station, United States Forest Service, USA), Andrew T. Storfer (School of Biological Sciences, Washington State University, USA), Lisette P. Waits (Fish and Wildlife Sciences, University of Idaho, USA) |
| title_short | Landscape genetics |
| title_sort | landscape genetics concepts methods applications |
| title_sub | concepts, methods, applications |
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| topic_facet | Populationsgenetik Landschaftsökologie Aufsatzsammlung |
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