Microbial evolution under extreme conditions:
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Berlin [u.a.]
De Gruyter
2015
|
| Schriftenreihe: | Life in extreme environments
2 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XIV, 276 S. Ill., graph. Darst. |
Internformat
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| 264 | 1 | |a Berlin [u.a.] |b De Gruyter |c 2015 | |
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Datensatz im Suchindex
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|---|---|
| adam_text | CONTENTS
PREFACE V
CONTRIBUTING AUTHORS XII
CORIEN BAKERMANS
1 EXTREME ENVIRONMENTS
AS MODEL
SYSTEMS FOR THE
STUDY OF MICROBIAL
EVOLUTION 1
1.1 INTRODUCTION 1
1.2 EXTREME ENVIRONMENTS AS MODEL SYSTEMS 1
1.3 WHAT IS KNOWN ABOUT MICROBIAL EVOLUTION? 4
1.3.1 COMMUNITY DIVERSITY AS A MEASURE OF EVOLUTION 7
1.3.2 ADAPTIVE TRAITS AS A MEASURE OF EVOLUTION 8
1.4 THEMES FROM EXTREME ENVIRONMENTS 9
1.5 CONCLUSIONS AND OPEN QUESTIONS 11
FRANCISCO J. LOPEZ DE SARO,
HECTOR DFAZ-MALDONADO, AND RICARDO AMILS
2 MICROBIAL
EVOLUTION: THE
VIEW FROM THE
ACIDOPHILES 19
2.1 INTRODUCTION 19
2.2 HORIZONTAL GENE TRANSFER 20
2.3 THEMOBILOME 21
2.4 PHAGES 22
2.5 PLASMIDS 23
2.6 TRANSPOSONS 24
2.7 EVOLUTION AND ECOLOGY: LONG TERM STUDIES OF GENETIC VARIATION
2.8 FUTURE DIRECTIONS 26
R. ERIC COLLINS
3 MICROBIAL EVOLUTION
IN THE
CRYOSPHERE 31
3.1 OVERVIEW 31
3.1.1 CRYOSPHERIC EVIRONMENTS 31
3.1.2 MODES OF EVOLUTION 34
3.1.3 ADAPTATIONS TO LIVING WITH ICE 37
3.2 FOCUS ON SEA ICE 38
3.2.1 SEA ICE CHARACTERISTICS 38
3.2.2 EVOLUTIONARY MODES IN SEA ICE 42
3.3 ONGOING WORK AND FUTURE DIRECTIONS 43
3.3.1 FIELD WORK AND EXPERIMENTATION 43
3.3.2 -OMICS IN THE CRYOSPHERE 44
3.3.3 LINKING PHENOTYPE AND GENOTYPE 46
HTTP://D-NB.INFO/1049600487
VIII
CONTENTS
MAXIMILIANO J. AMENABAR, MATTHEW R. URSCHEL, AND ERIC S. BOYD
4 METABOLIC AND TAXONOMIC DIVERSIFICATION
IN CONTINENTAL
MAGMATIC
HYDROTHERMAL SYSTEMS 57
4.1 INTRODUCTION 57
4.2 GEOLOGICAL DRIVERS OF GEOCHEMICAL VARIATION IN CONTINENTAL
HYDROTHERMAL
SYSTEMS 59
4.3 TAXONOMIC AND FUNCTIONAL DIVERSITY IN CONTINENTAL HYDROTHERMAL
ECOSYSTEMS 64
4.4 APPLICATION OF PHYLOGENETIC APPROACHES TO MAP TAXONOMIC AND
FUNCTIONAL DIVERSITY ON SPATIAL GEOCHEMICAL LANDSCAPES 68
4.5 MOLECULAR ADAPTATION TO HIGH TEMPERATURE 72
4.5.1 LIPIDS 72
4.5.2. PROTEIN STABILITY 73
4.5.3 CYTOPLASMIC OSMOLYTES 74
4.5.4 MOTILITY 76
4.6 MECHANISMS OF EVOLUTION IN HIGH TEMPERATURE ENVIRONMENTS 78
4.7 CONCLUDING REMARKS 81
AHARON OREN
5 HALOPHILIC MICROORGANISMS AND ADAPTATION
TO LIFE
AT HIGH SALT
CONCENTRATIONS
- EVOLUTIONARY ASPECTS 97
5.1 PHYLOGENETIC AND PHYSIOLOGICAL DIVERSITY OF HALOPHILIC
MICROORGANISMS 97
5.2 WHAT ADAPTATIONS ARE NECESSARY TO BECOME A HALOPHILE? 99
5.3 IS AN ACIDIC (META)PROTEOME INDEED INDICATIVE FOR HALOPHILY AND HIGH
INTRACELLULAR IONIC CONCENTRATIONS? 100
5.4 GENETIC VARIATION AND HORIZONTAL GENE TRANSFER IN COMMUNITIES OF
HALOPHILIC ARCHAEA 101
5.5 SALINIBACTER: CONVERGENT EVOLUTION AND THE SALT-IN* STRATEGY OF
HALOADAPTATION 103
5.6 HIGH INTRACELLULAR K
+
CONCENTRATIONS BUT NO ACIDIC PROTEOME? THE
CASE OF
THE HALANAEROBIALES 104
5.7 DIFFERENT MODES OF HALOADAPTATION IN CLOSELY RELATED HALORHODOSPIRA
SPECIES 105
5.8 FINAL COMMENTS 105
JOHN R. BATTISTA
6 THE ORIGIN OF EXTREME IONIZING
RADIATION RESISTANCE 111
6.1 INTRODUCTION AND BACKGROUND 111
6.1.1 IONIZING RADIATION 111
6.1.2 BIOLOGICAL DAMAGE CAUSED BY ELECTROMAGNETIC RADIATIONS 112
CONTENTS *
IX
6.1.3 EXPOSURE TO IONIZING RADIATION SELECTS FOR IONIZING RADIATION
RESISTANT
BACTERIA 113
6.1.4 THE OCCURRENCE OF EXTREME IONIZING RADIATION RESISTANCE WITHIN THE
BACTERIA AND ARCHAEA 114
6.1.5 NATURAL SOURCES OF IONIZING RADIATION 115
6.2 THE EXISTENCE OF EXTREME IONIZING RADIATION RESISTANCE IS DIFFICULT
TO
RECONCILE WITH THE NATURAL HISTORY OF THE EARTH 115
6.3 PROPOSED EXPLANATIONS FOR THE EXISTENCE OF IONIZING RADIATION
RESISTANCE 116
6.3.1 PANSPERMIA: THE EXCHANGE OF BACTERIA BETWEEN PLANETS 116
6.3.2 MAN-MADE SOURCES OF IONIZING RADIATION ARE THE SOURCE OF EXTREME
IONIZING RADIATION RESISTANT MICROORGANISMS 118
6.3.3 EXAPTATION 118
6.4 CONCLUSIONS 120
JENNIFER B. GLASS,
CECILIA BATMALLE KRETZ, MELISSA J. WARREN,
AND CLAIRE S. TING
7 CURRENT PERSPECTIVES ON MICROBIAL STRATEGIES
FOR SURVIVAL UNDER EXTREME
NUTRIENT STARVATION: EVOLUTION
AND ECOPHYSIOLOGY 127
7.1 INTRODUCTION 127
7.2 CARBON 128
7.3 NITROGEN 133
7.4 PHOSPHORUS 136
7.5 IRON 137
7.6 OTHER MICRONUTRIENTS 138
7.7 CONCLUSIONS 139
JOSEPH SECKBACH AND PABULO
HENRIQUE RAMPELOTTO
8 POLYEXTREMOPHILES 153
8.1 INTRODUCTION 153
8.2 BACTERIA 154
8.2.1 DEINOCOCCUS RADIODURANS: CONAN THE BACTERIUM 154
8.2.2 CHROOCOCCIDIOPSIS 156
8.3 ARCHAEA 157
8.3.1 HALOBACTERIUM SALINARUM NRC-1: A MODEL ORGANISM 157
8.4 EUKARYOTA 158
8.4.1 CYANIDIOPHYCEAE 158
8.4.2 LICHENS 159
8.4.3 TARDIGRADES: NATURE S TOUGHEST ANIMAL 161
8.5 CONCLUSION 162
X * CONTENTS
WILLIAM F. MARTIN, SINJE NEUKIRCHEN, AND FILIPA L. SOUSA
9 EARLY LIFE 171
CENE GOSTINCAR,
NINA GUNDE-CIMERMAN,
AND MARTIN GRUBE
10 POLYEXTREMOTOLERANCE AS THE FUNGAL
ANSWER TO CHANGING
ENVIRONMENTS 185
10.1 INTRODUCTION 185
10.2 EXTREMES IN NATURE 185
10.3 ANTHROPOGENIC EXTREMES: INDOOR HABITATS 190
10.4 COINCIDENTAL OPPORTUNITIES: OPPORTUNISTIC INFECTIONS 192
10.5 CONCLUSIONS: POLYEXTREMOTOLERANCE 197
ALEXANDER I. CULLEY, MIGUN SHAKYA, AND ANDREW S. LANG
11 VIRAL EVOLUTION
AT THE
LIMITS 209
11.1 INTRODUCTION 209
11.2 ACIDIC HOT SPRINGS AND HYPERSALINE ENVIRONMENTS 209
11.3 THE DEEP SEA 212
11.4 POLAR ENVIRONMENTS 213
11.5 VIRUSES AND THEIR EFFECTS ON HOST ORGANISMS AND COMMUNITIES 214
11.6 FUTURE PERSPECTIVES 216
EVA C. M. NOWACK AND ARTHUR R. GROSSMAN
12 EVOLUTIONARY PRESSURES AND THE
ESTABLISHMENT OF ENDOSYMBIOTIC
ASSOCIATIONS 223
12.1 INTRODUCTION 223
12.2 DIVERSITY, EVOLUTION, AND STABILITY OF ENDOSYMBIOTIC
RELATIONSHIPS 227
12.2.1 DIVERSITY OF ENDOSYMBIONTS AND THEIR PHYSIOLOGICAL FUNCTIONS 227
12.2.2 EVOLUTIONARY ROUTES TO ESTABLISH AND MAINTAIN ENDOSYMBIOSIS 228
12.2.3 STABILITY AND THE AGE OF ENDOSYMBIOSES 230
12.3 GENOME EVOLUTION IN ENDOSYMBIOTIC BACTERIA 230
12.3.1 REDUCTIVE GENOME EVOLUTION IN ENDOSYMBIONTS 230
12.3.2 EVOLUTION TOWARD AN ORGANELLE AND BEYOND 232
12.4 EVOLUTION OF THE HOST GENOME AS SHAPED BY ENDOSYMBIOSIS 235
12.4.1 COMPLEMENTARITY OF HOST AND ENDOSYMBIONT METABOLIC ABILITIES 235
12.4.2 ACQUISITION OF SYMBIOTIC POTENTIAL 236
12.4.3 REDEFINITION OF IMMUNE FUNCTIONS 238
12.5 CONCLUSIONS AND FUTURE DIRECTIONS 239
FABIA U. BATTISTUZZI
AND ANAIS BROWN
13 RATES OF EVOLUTION UNDER EXTREME
AND MESOPHILIC CONDITIONS 247
13.1 OVERVIEW 247
CONTENTS
XI
13.2 HOW DO WE ESTIMATE RATES OF GENETIC CHANGE? 253
13.2.1 RELATIVE RATE ESTIMATION 254
13.2.2 ABSOLUTE RATE ESTIMATION 255
13.3 HOW DO WE
MODEL EVOLUTIONARY RATES? 257
13.4 ENVIRONMENTS AND EVOLUTIONARY RATES 257
13.4.1 EVOLUTIONARY RATES OF PATHOGENS 258
13.5 LARGE-SCALE GENOMIC CHANGES: DUPLICATIONS/LOSS AND HORIZONTAL GENE
ACQUISITION 259
13.5.1 RATES OF GENE
DUPLICATION AND LOSS 259
13.5.2 HIGHWAYS OF HORIZONTAL GENE TRANSFERS 261
13.6 CONCLUSIONS 263
INDEX 269
|
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| spelling | Microbial evolution under extreme conditions [Ed. Corien Bakermans] Berlin [u.a.] De Gruyter 2015 XIV, 276 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Life in extreme environments 2 Molekulare Evolution (DE-588)4812902-1 gnd rswk-swf Extremophiler Mikroorganismus (DE-588)4332438-1 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Extremophiler Mikroorganismus (DE-588)4332438-1 s Molekulare Evolution (DE-588)4812902-1 s DE-604 Bakermans, Corien edt Life in extreme environments 2 (DE-604)BV041795526 2 DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027262453&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Microbial evolution under extreme conditions Life in extreme environments Molekulare Evolution (DE-588)4812902-1 gnd Extremophiler Mikroorganismus (DE-588)4332438-1 gnd |
| subject_GND | (DE-588)4812902-1 (DE-588)4332438-1 (DE-588)4143413-4 |
| title | Microbial evolution under extreme conditions |
| title_auth | Microbial evolution under extreme conditions |
| title_exact_search | Microbial evolution under extreme conditions |
| title_full | Microbial evolution under extreme conditions [Ed. Corien Bakermans] |
| title_fullStr | Microbial evolution under extreme conditions [Ed. Corien Bakermans] |
| title_full_unstemmed | Microbial evolution under extreme conditions [Ed. Corien Bakermans] |
| title_short | Microbial evolution under extreme conditions |
| title_sort | microbial evolution under extreme conditions |
| topic | Molekulare Evolution (DE-588)4812902-1 gnd Extremophiler Mikroorganismus (DE-588)4332438-1 gnd |
| topic_facet | Molekulare Evolution Extremophiler Mikroorganismus Aufsatzsammlung |
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