Genome analysis: current procedures and applications
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Norfolk
Caister Acad. Press
2014
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis Klappentext |
| Beschreibung: | xiii, 373 S. Ill., graph. Darst. |
| ISBN: | 9781908230294 |
Internformat
MARC
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Datensatz im Suchindex
| _version_ | 1804152116070055936 |
|---|---|
| adam_text | Contents
Contributors
v
Preface
ix
1
Identification
of Structural Variation
1
Suzanne
S.
Sindi
and Benjamin J. Raphael
2
Methods for
RNA
Isolation, Characterization and Sequencing
(RNA-Seq)
21
Paul
Zumbo
and Christopher E. Mason
3
Transcriptome Reconstruction and Quantification from
RNA
Sequencing Data
39
Sahar
Al
Seesi, Serghei Mangul, Adrian
Căciula,
Alex Zelikovsky
and Ion
Măndoiu
4
Identification of Small Interfering
RNA
from Next-generation
Sequencing Data
61
Thomas J. Hardcastle
5
Motif Discovery and Motif Finding in ChlP-Seq Data
83
Ivan V Kulakovskiy and Vsevolod J. Makeev
6
Mammalian Enhancer Prediction
101
Dongwon Lee and Michael A. Beer
7 DNA
Patterns for Nucleosome Positioning
121
I lya loshikhes
8
Hypermethytation in Cancer
151
Marta Sánchez-Carbayo
9
Identification and Analysis of Transposable Elements in Genomic
Sequences
165
Laurent Modolo and
Emmanuelle Lerat
10
The Current State of Metagenomic Analysis
183
Pieter
De Maayer,
Angel
Valverde
and Don A. Cowan
ivi
Contents
11 Metatranscriptomics 221
Atsushi
Ogura
12
Inferring
Viral Quasispecies
Spectra from Shotgun and Amplicon
Next-Generation Sequencing Reads
231
Irina
Astrovskaya, Nicholas Mancuso,
Bassam Tork,
Serghei Mangul,
Alex Artyomenko, Pavel
Skums,
Lilia
Ganova-Raeva, Ion
Măndoiu
and Alex Zelikovsky
13 DNA
Instability in Bacterial Genomes: Causes and Consequences
263
Pedro H.
Oliveira, Duarte M.F. Prazeres and Gabriel A. Monteiro
14
Comparative Methods for
RNA
Structure Prediction
287
Eckart Bindewald
and Bruce A. Shapiro
15
Context-free Grammars and
RNA
Secondary Structure Prediction
307
Markus E.
Nebel
and
Anika Schulz
16
Stochastic Context-free Grammars and
RNA
Secondary Structure
Prediction
339
James W.J. Anderson
Index
367
Colour Plate A1
Genome
Analys
Current Procedures and Applications
In recent years there have been tremendous achievements made
in
DNA
sequencing technologies and corresponding innovations in
data analysis and bioinformatics that have revolutionized the field of
genome analysis.
In this book, an impressive array of expert authors highlight and
review current advances in genome analysis. This volume provides an
invaluable, up-to-date and comprehensive overview of the methods
currently employed for next-generation sequencing (NGS) data
analysis, highlights their problems and limitations, demonstrates the
applications and indicates the developing trends in various fields of
genome research. The first part of the book is devoted to the methods
and applications that arose from, or were significantly advanced
by, NGS technologies: the identification of structural variation from
DNA-seq data; whole-transcriptome analysis and discovery of
small interfering RNAs (siRNAs) from RNA-seq data; motif finding in
promoter regions, enhancer prediction and nucleosome sequence
code discovery from ChiP-Seq data; identification of methylation
patterns in cancer from MeDIP-seq data; transposon identification
in NGS data; metagenomics and metatranscriptomics; NGS of viral
communities; and causes and consequences of genome instabilities.
The second part is devoted to the field of
RNA
biology with the last
three chapters devoted to computational methods of
RNA
structure
prediction including context-free grammar applications.
An essential book for everyone involved in sequence data analysis,
next-generation sequencing, high-throughput sequencing,
RNA
structure prediction, bioinformatics and genome analysis.
|
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| spelling | Genome analysis current procedures and applications ed. by Maria S. Poptsova Norfolk Caister Acad. Press 2014 xiii, 373 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methode (DE-588)4038971-6 gnd rswk-swf Genanalyse (DE-588)4200230-8 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Genanalyse (DE-588)4200230-8 s Methode (DE-588)4038971-6 s DE-604 Poptsova, Maria S. Sonstige oth Erscheint auch als Online-Ausgabe 978-1-908230-68-3 Digitalisierung UB Bayreuth - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027242093&sequence=000003&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis Digitalisierung UB Bayreuth - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027242093&sequence=000004&line_number=0002&func_code=DB_RECORDS&service_type=MEDIA Klappentext |
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| title | Genome analysis current procedures and applications |
| title_auth | Genome analysis current procedures and applications |
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| title_full | Genome analysis current procedures and applications ed. by Maria S. Poptsova |
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| title_short | Genome analysis |
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