Microbial life of the deep biosphere:
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Berlin [u.a.]
De Gruyter
2014
|
| Schriftenreihe: | Life in extreme environments
1 |
| Schlagworte: | |
| Online-Zugang: | Inhaltstext Inhaltsverzeichnis |
| Beschreibung: | XVII, 325 S. Ill., graph. Darst. 240 mm x 170 mm |
| ISBN: | 9783110300093 3110300095 |
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Datensatz im Suchindex
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CONTENTS
PREFACE V
CONTRIBUTING AUTHORS XV
R. JOHN PARKES, HENRIK SASS, BARRY CRAGG, GORDON WEBSTER, ERWAN ROUSSEL,
AND AN
DREW WEIGHTMAN
1 STUDIES ON PROKARYOTIC POPULATIONS AND PROCESSES IN SUBSEAFLOOR
SEDIMENTS -
AN UPDATE 1
1.1 NEW SITES INVESTIGATED 1
1.1.1 SOUTHEAST ATLANTIC SECTOR OF THE SOUTHERN OCEAN (LEG 177) 1
1.1.2 WOODLARK BASIN, NEAR PAPUA NEW GUINEA, PACIFIC OCEAN (LEG 180) 4
1.1.3 LEG
185, SITE 1149 IN THE IZU-BONIN TRENCH,
WESTERN EQUATORIAL PACIFIC 6
1.1.4 NANKAI TROUGH (LEG 190), SUBDUCTION ZONE/ACCRETIONARY PRISM,
PACIFIC
OCEAN 7
1.1.5 EASTERN EQUATORIAL PACIFIC AND PERU MARGIN SITES 1225-1231
(LEG 201) 10
1.1.6 NEWFOUNDLAND MARGIN (LEG 210) 12
1.1.7 CARBONATE MOUND (I0DP EXPEDITION 307) 13
1.2 HIGH-PRESSURE CULTIVATION - DEEPLSOBUG, GAS HYDRATE SEDIMENTS 15
1.3 SUBSEAFLOOR BIOSPHERE SIMULATION EXPERIMENTS 18
1.4 CONCLUSIONS 20
JENNIFER F. BIDDLE, SEAN P. JUNGBLUTH, MARK A. LEVER, AND MICHAEL S.
RAPPE
2 LIFE IN THE OCEANIC CRUST 29
2.1 INTRODUCTION 29
2.2 SAMPLING TOOLS 30
2.2.1 TOOLS FOR ACCESSINGTHE DEEP BASEMENT BIOSPHERE 32
2.3 CONTAMINATION 36
2.3.1 CONTAMINATION INDUCED DURING DRILLING 36
2.3.2 CONTAMINATION DURINGFLUID SAMPLING 38
2.4 DIRECT EVIDENCE FOR LIFE IN THE DEEP OCEAN CRUST 38
2.4.1 TEXTURAL ALTERATIONS 39
2.4.2 GEOCHEMICAL EVIDENCE FROM FLUIDS 40
2.4.3 GEOCHEMICAL EVIDENCE FROM ROCKS 41
2.4.4 GENETIC SURVEYS 45
2.5 FUTURE DIRECTIONS 51
HTTP://D-NB.INFO/1043778039
X * CONTENTS
KARSTEN PEDERSEN
3 MICROBIAL LIFE IN TERRESTRIAL HARD ROCK ENVIRONMENTS 63
3.1 HARD ROCK AQUIFERS FROM THE PERSPECTIVE OF MICROORGANISMS 63
3.2 WINDOWS INTO THE TERRESTRIAL HARD ROCK BIOSPHERE 64
3.2.1 SAMPLING METHODS FOR MICROBES IN HARD ROCK AQUIFERS 64
3.2.2 YESTERDAY MARINE - TERRESTRIAL TODAY 65
3.2.3 BASALTS AND OPHIOLITES 66
3.2.4 GRANITES 68
3.2.5 HARD ROCKS OF VARYING ORIGIN 70
3.3 ENERGY FROM WHERE? 71
3.3.1 DEEP REDUCED GASES 72
3.4 ACTIVITY 73
3.4.1 STABLE ISOTOPES 73
3.4.2 GEOCHEMICAL INDICATORS 74
3.4.3 IN VITRO ACTIVITY 74
3.4.4 IN SITU ACTIVITY 74
3.4.5 PHAGES MAY CONTROL ACTIVITY RATES 76
3.5 WHAT'S NEXT IN THE EXPLORATION OF MICROBIAL LIFE IN DEEP HARD ROCK
AQUIFERS? 76
LAURENT TOFFIN, KARINE ALAIN
4 TECHNOLOGICAL STATE OF THE ART AND CHALLENGES 83
4.1 BASIC CONCEPTS AND DIFFICULTIES INHERENT TO THE CULTIVATION OF
SUBSEAFLOOR
PROKARYOTES 83
4.2 MICROBIAL GROWTH MONITORING, METHOD DETECTION LIMITS AND INNOVATIVE
CULTIVATION METHODS 91
4.3 CHALLENGES AND RESEARCH NEEDS (INSTRUMENTAL, METHODOLOGICAL AND
LOGISTICS NEEDS) 92
YUKI MORONO, MOTOO ITO, AND FUMIO INAGAKI
5 DETECTING SLOW METABOLISM IN THE SUBSEAFLOOR: ANALYSIS OF SINGLE CELLS
USING
NANOSIMS 101
5.1 INTRODUCTION 101
5.2 OVERVIEW OF ION IMAGINGWITH A NANOSIMS ION MICROPROBE 102
5.3 DETECTING SLOW METABOLISM: BULK TO SINGLE CELLS 105
5.3.1 BULK MEASUREMENT OF SUBSEAFLOOR MICROBIAL ACTIVITY USING
RADIOTRACERS 105
5.3.2 OBSERVING RADIOACTIVE SUBSTRATE INCORPORATION AT THE CELLULAR
LEVEL:
MICROAUTORADIOGRAPHY 106
5.3.3 QUANTITATIVE ANALYSIS OF STABLE ISOTOPE INCORPORATION USING
NANOSIMS 107
CONTENTS
* XI
5.4 BRIDGING IDENTIFICATION AND FUNCTIONAL ANALYSIS OF MICROBES USING
ELEMENTAL LABELING 110
5.5 CRITICAL STEP FOR SUCCESSFUL NANOSIMS ANALYSIS: SAMPLE
PREPARATION 112
5.6 FUTURE DIRECTIONS 114
KAREN G. LLOYD
6 QUANTIFYING MICROBES IN THE MARINE SUBSEAFLOOR: SOME NOTES OF CAUTION
121
6.1 INTRODUCTION 121
6.2 QUANTIFICATION OF SPECIFIC MICROBIAL GROUPS
IN MARINE SEDIMENTS 124
6.3 ASSESSMENT OF QUANTITATIVE METHODS IN MARINE SEDIMENTS: THE LEG 201
PERU MARGIN EXAMPLE 128
6.4 GLOBAL META-ANALYSIS OF FISH, CARD-FISH AND QPCR QUANTIFICATIONS OF
BACTERIA AND ARCHAEA 132
6.5 FUTURE OUTLOOK 134
ANDREAS TESKE
7 ARCHAEA IN DEEP MARINE SUBSURFACE SEDIMENTS 143
7.1 INTRODUCTION 143
7.2 ARCHAEAL RIBOSOMAL RNA PHYLOGENY 143
7.3 MARINE SUBSURFACE ARCHAEA 144
7.4 ARCHAEAL HABITAT PREFERENCES IN THE SUBSURFACE 149
7.5 METHANOGENIC AND METHANE-OXIDIZING ARCHAEA 152
7.6 ARCHAEAL ABUNDANCE AND ECOSYSTEM SIGNIFICANCE
IN THE SUBSURFACE 154
BERNARD OLLIVIER, JEAN BORGOMANO, AND PHILIPPE OGER
8 PETROLEUM: FROM FORMATION TO MICROBIOLOGY 161
8.1- INTRODUCTION 161
8.2 PETROLEUM FORMATION 161
8.2.1 PETROLEUM SYSTEM 163
8.3 PETROLEUM MICROBIOLOGY 166
8.3.1 THE SULFATE-REDUCING PROKARYOTES 168
8.3.2 THE METHANOARCHAEA 171
8.3.3 THE FERMENTATIVE PROKARYOTES 174
8.3.4 OTHER METABOLIC LIFESTYLE BACTERIA 177
8.4 CONCLUSION 179
XII
CONTENTS
VIRGINIA EDGCOMB, WILLIAM ORSI, AND JENNIFER F. BIDDLE
9 FUNGI IN THE MARINE SUBSURFACE 187
9.1 INTRODUCTION 187
9.2 THE CONCEPT OF MARINE FUNGI 187
9.3 FUNGI IN MARINE NEAR-SURFACE SEDIMENTS IN THE DEEP SEA 189
9.4 FUNGI IN THE DEEP SUBSURFACE 190
9.4.1 INITIAL WHOLE COMMUNITY AND PROKARYOTE-FOCUSED STUDIES OF THE
MARINE
SUBSURFACE YIELDING INFORMATION ON EUKARYOTES 190
9.4.2 EUKARYOTE-FOCUSED STUDIES YIELDING INFORMATION ON FUNGI IN THE
DEEP
SUBSURFACE 191
9.5 HOW DEEP DO FUNGI GO IN THE SUBSURFACE? 197
9.6 SUMMARY 197
MASHAL ALAWI
10 MICROBES IN GEO-ENGINEERED SYSTEMS: GEOMICROBIOLOGICAL ASPECTS OF CCS
AND
GEOTHERMAL ENERGY GENERATION 203
10.1 INTRODUCTION 203
10.1.1 CARBON CAPTURE AND STORAGE (CCS) 204
10.1.2 GEOTHERMAL ENERGY AND AQUIFER ENERGY STORAGE 205
10.2 MICROBIAL DIVERSITY IN GEO-ENGINEERED RESERVOIRS 206
10.3 INTERACTIONS BETWEEN MICROBES AND GEO-ENGINEERED SYSTEMS 208
10.3.1 GENERAL CONSIDERATIONS 208
10.3.2 MICROBIAL PROCESSES IN THE DEEP BIOSPHERE POTENTIALLY AFFECTED
BY CCS 209
10.3.3 EXAMPLES FROM A CCS PILOT SITE, C0
2
DEGASING SITES AND LABORATORY
EXPERIMENTS 211
10.3.4 IMPACT OF MICROBIALLY-DRIVEN PROCESSES ON C0
2
TRAPPING
MECHANISMS 213
10.3.5 IMPACT OF MICROBIALLY-DRIVEN PROCESSES ON CCS FACILITIES 214
10.3.6 IMPACT OF MICROBIALLY-DRIVEN PROCESSES ON GEOTHERMAL ENERGY
PLANTS 214
10.4 METHODS TO ANALYZE THE INTERACTION BETWEEN GEO-ENGINEERED SYSTEMS
AND THE DEEP BIOSPHERE 216
10.4.1 SAMPLING OF RESERVOIR FLUIDS AND ROCK CORES 216
10.4.2 METHODS TO ANALYZE MICROBES IN GEO-ENGINEERED SYSTEMS 216
CHARLES S. COCKELL
11 THE SUBSURFACE HABITABILITY OF TERRESTRIAL ROCKY PLANETS: MARS 225
11.1 INTRODUCTION 225
11.2 THE SUBSURFACE OF MARS - OUR CURRENT KNOWLEDGE 226
11.3 MARTIAN SUBSURFACE HABITABILITY, PAST AND PRESENT 233
11.3.1 VITAL ELEMENTS (C, H, N, 0, P, S) 233
CONTENTS
XIII
11.3.2 OTHER MICRONUTRIENTS AND TRACE ELEMENTS 234
11.3.3 LIQUID WATERTHROUGH TIME 235
11.3.4 REDOX COUPLES 238
11.3.5 RADIATION 239
11.3.6 OTHER PHYSICAL AND ENVIRONMENTAL FACTORS 239
11.3.7 ACIDITY 240
11.4 IMPACT CRATERS AND DEEP SUBSURFACE HABITABILITY 242
11.5 THE NEAR-SUBSURFACE HABITABILITY OF PRESENT AND RECENT MARS - AN
EMPIRICAL EXAMPLE 243
11.6 UNINHABITED, BUT HABITABLE SUBSURFACE ENVIRONMENTS? 245 ,
11.7 TEN TESTABLE HYPOTHESES ON HABITABILITY OF THE MARTIAN
SUBSURFACE 247
11.8 SAMPLING THE SUBSURFACE OF MARS 250
11.9 CONCLUSION 251
ROLANDO DI PRIMIO
12 ASSESSING BIOSPHERE-GEOSPHERE INTERACTIONS OVER GEOLOGIC TIME SCALES:
INSIGHTS FROM BASIN MODELING 261
12.1 INTRODUCTION 261
12.2 BASIN MODELING 262
12.3 MODELING PROCESSES AT THE DEEP BIO-GEO INTERFACE 264
12.3.1 FEEDING THE DEEP BIOSPHERE (BIOGENIC GAS) 264
12.3.2 PETROLEUM BIODEGRADATION 267
12.4 MODELING PROCESSES AT THE SHALLOW BIO-GEO INTERFACE 274
12.5 CONCLUSIONS 275
DOUG LAROWE, JAN AMEND
13 ENERGETIC CONSTRAINTS ON LIFE IN MARINE DEEP SEDIMENTS 279
13.1 INTRODUCTION 279
13.2 PREVIOUS WORK 280
13.3 STUDY SITE OVERVIEW 280
13.3.1 JUAN DE FUCA (JDF) 281
13.3.2 PERU MARGIN (PM) 281
13.3.3 SOUTH PACIFIC GYRE (SPG) 282
13.4 OVERVIEW OF CATABOLIC POTENTIAL 282
13.5 COMPARING DEEP BIOSPHERES 288
13.6 ELECTRON ACCEPTOR UTILIZATION 290
13.7 ENERGY DEMAND 292
13.8 CONCLUDING REMARKS 293
13.9 COMPUTATIONAL METHODS 293
13.9.1 THERMODYNAMIC PROPERTIES OF ANHYDROUS FERRIHYDRITE AND
PYROLUSITE 294
XIV *
CONTENTS
HANS ROY
14 EXPERIMENTAL ASSESSMENT OF COMMUNITY METABOLISM IN THE SUBSURFACE 303
14.1 INTRODUCTION 303
14.1.1 THE ENERGY SOURCE 303
14.1.2 THE CARBON BUDGET 304
14.1.3 DISTRIBUTION VERTICAL OF MICROBIAL METABOLISM THE SEDIMENT PILE
305
14.2 QUANTIFIABLE METABOLIC PROCESSES 306
14.2.1 REACTION DIFFUSION MODELING AND MASS BALANCES 307
14.2.2 MEASUREMENTS OF RATES OF ENERGY METABOLISM WITH EXOTIC
ISOTOPES 312
14.3 SUMMARY 315
INDEX 319 |
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| indexdate | 2024-09-10T01:08:51Z |
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| language | English |
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| physical | XVII, 325 S. Ill., graph. Darst. 240 mm x 170 mm |
| publishDate | 2014 |
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| publishDateSort | 2014 |
| publisher | De Gruyter |
| record_format | marc |
| series | Life in extreme environments |
| series2 | Life in extreme environments |
| spelling | Microbial life of the deep biosphere [Ed. Jens Kallmeyer ... ] Berlin [u.a.] De Gruyter 2014 XVII, 325 S. Ill., graph. Darst. 240 mm x 170 mm txt rdacontent n rdamedia nc rdacarrier Life in extreme environments 1 Geomikrobiologie (DE-588)4156734-1 gnd rswk-swf Tiefseeboden (DE-588)4185437-8 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Tiefseeboden (DE-588)4185437-8 s Geomikrobiologie (DE-588)4156734-1 s DE-604 Kallmeyer, Jens Sonstige oth Life in extreme environments 1 (DE-604)BV041795526 1 X:MVB text/html http://deposit.dnb.de/cgi-bin/dokserv?id=4493478&prov=M&dok_var=1&dok_ext=htm Inhaltstext DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=027169410&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Microbial life of the deep biosphere Life in extreme environments Geomikrobiologie (DE-588)4156734-1 gnd Tiefseeboden (DE-588)4185437-8 gnd |
| subject_GND | (DE-588)4156734-1 (DE-588)4185437-8 (DE-588)4143413-4 |
| title | Microbial life of the deep biosphere |
| title_auth | Microbial life of the deep biosphere |
| title_exact_search | Microbial life of the deep biosphere |
| title_full | Microbial life of the deep biosphere [Ed. Jens Kallmeyer ... ] |
| title_fullStr | Microbial life of the deep biosphere [Ed. Jens Kallmeyer ... ] |
| title_full_unstemmed | Microbial life of the deep biosphere [Ed. Jens Kallmeyer ... ] |
| title_short | Microbial life of the deep biosphere |
| title_sort | microbial life of the deep biosphere |
| topic | Geomikrobiologie (DE-588)4156734-1 gnd Tiefseeboden (DE-588)4185437-8 gnd |
| topic_facet | Geomikrobiologie Tiefseeboden Aufsatzsammlung |
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| volume_link | (DE-604)BV041795526 |
| work_keys_str_mv | AT kallmeyerjens microbiallifeofthedeepbiosphere |