Plant circadian networks: methods and protocols
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
New York, NY
Humana Press
2014
|
| Schriftenreihe: | Methods in molecular biology
1158 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XI, 361 S. Ill., graph. Darst. |
Internformat
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Datensatz im Suchindex
| _version_ | 1804151969869201408 |
|---|---|
| adam_text | Plant Circadian Networks
Methods and Protocols
Edited by
Dorothee Staiger
Molecular Cell Physiology, University of Bielefeld, Bielefeld, Germany
Humana Press
Contents
Preface v
Contributors ix
1 Measurement of Luciferase Rhythms 1
C Robertson McClung and Qiguang Xie
2 Online Period Estimation and Determination of Rhythmicity
in Circadian Data, Using the BioDare Data Infrastructure 13
Anne Moore, Tomasz Zielinski, and Andrew J Millar
3 Global Profiling of the Circadian Transcriptome Using Microarrays 45
Polly Tingshan Hsu and Stacey L Harmer
4 ChlP-Seq Analysis of Histone Modifications at the Core
of the Arabidopsis Circadian Clock 57
Jordi Malapeira and Paloma Mas
5 Quantitative Transcriptome Analysis Using RNA-seq 71
Canan Kiilahoglu and Andrea Brdutigam
6 Rapid and Parallel Quantification of Small and Large RNA Species 93
Corinna Speth and Sascha Laubinger
7 The RIPper Case: Identification of RNA-Binding Protein Targets
by RNA Immunoprecipitation 107
Tino Koster, Meike Haas, and Dorothee Staiger
8 A Protocol for Visual Analysis of Alternative Splicing in RNA-Seq Data
Using Integrated Genome Browser 123
Alyssa A Gulledge, Hiral Vora, Ketan Patel, and Ann E Loraine
9 AthaMap Web Tools for the Analysis of Transcriptional
and Posttranscriptional Regulation of Gene Expression
in Arabidopsis thaliana 139
Reinhard Hehl and Lorenz Billow
10 Analysis of mRNA Translation States in Arabidopsis
Over the Diurnal Cycle by Polysome Microarray 157
Anamika Missra and Albrecht G von Arnim
11 Immunoprecipitation-Based Analysis of Protein-Protein Interactions 175
Corinna Speth, Luis A A Toledo-Filho, and Sascha Laubinger
12 Comparative Phosphoproteomics to Identify Targets
of the Clock-Relevant Casein Kinase 1 in C reinhardtii Flagella 187
Jens Boesger, Volker Wagner, Wolfram Weisheit, and Maria Mittag
13 Pulsed Induction of Circadian Clock Genes in Arabidopsis Seedlings 203
Stephen M Knowles, Sheen X Lu, and Elaine M Tobin
vii
viii Contents
14 The Use of Fluorescent Proteins to Analyze Circadian Rhythms 209
Ekaterina Shor, Miriam Hassidim, and Rachel M Green
15 Measuring Circadian Oscillations of Cytosolic-Free Calcium
in Arabidopsis thaliana 215
Timothy J Hearn and Alex A R Webb
16 Circadian Life Without Micronutrients: Effects of Altered
Micronutrient Supply on Clock Function in Arabidopsis 227
Patrice A Salome, Maria Bemal, and Ute Kramer
17 Assessing Redox State and Reactive Oxygen Species
in Circadian Rhythmicity 239
Katharina Konijj, Helena Galliardt, Marten Moore,
Patrick Trejfon, Thorsten Seidel, and Karl-Josef Dietz
18 Circadian Regulation of Plant Immunity to Pathogens : 273
Robert A Ingle and Laura C Roden
19 Determination of Photoperiodic Flowering Time Control
in Arabidopsis and Barley 285
Alexander Steffen, Andreas Fischer, and Dorothee Staiger
20 The Perennial Clock Is an Essential Timer for Seasonal Growth
Events and Cold Hardiness 297
Mikael Johansson, Cristian Ibanez, Naoki Takata,
and Maria E Eriksson
21 Monitoring Seasonal Bud Set, Bud Burst, and Cold
Hardiness in Populus 313
Mikael Johansson, Naoki Takata, Cristian Ibanez,
and Maria E Eriksson
22 Transformation and Measurement of Bioluminescence
Rhythms in the Moss Physcomitrella patens 325
Setsuyuki Aoki, Ryo Okada, and Santosh B Satbhai
23 Modeling and Simulating the Arabidopsis thaliana Circadian
Clock Using XPP-AUTO 337
Christoph Schmal, Jean-Christophe Leloup, and Didier Gonze
Index 359
*
P
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| title | Plant circadian networks methods and protocols |
| title_auth | Plant circadian networks methods and protocols |
| title_exact_search | Plant circadian networks methods and protocols |
| title_full | Plant circadian networks methods and protocols ed. by Dorothee Staiger ... |
| title_fullStr | Plant circadian networks methods and protocols ed. by Dorothee Staiger ... |
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| title_short | Plant circadian networks |
| title_sort | plant circadian networks methods and protocols |
| title_sub | methods and protocols |
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