Biomolecular spectroscopy: advances from integrating experiments and theory
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Amsterdam [u.a.]
Elsevier, Acad. Press
2013
|
| Ausgabe: | 1. ed. |
| Schriftenreihe: | Advances in protein chemistry and structural biology
93 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | Einzelaufnahme eines Zeitschr.-Bd. |
| Beschreibung: | XII, 336 S. graph. Darst. |
| ISBN: | 9780124165960 |
Internformat
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| 245 | 1 | 0 | |a Biomolecular spectroscopy |b advances from integrating experiments and theory |c ed. by Christo Z. Christov |
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Datensatz im Suchindex
| _version_ | 1804151533974061056 |
|---|---|
| adam_text | Titel: Biomolecular spectroscopy
Autor: Christov, Christo
Jahr: 2013
CONTENTS
Contributors ix
Introduction xi
1. Studying Biomacromolecules with Two-Dimensional
Infrared Spectroscopy 1
Rachel E. Hill, Neil T. Hunt, and Jonathan D. Hirst
1. Introduction 2
2. Proteins 8
3. Poly-Nucleic Acids 26
4. Conclusion 30
Acknowledgments 31
Glossary 31
References 32
2. NMR Studies on the Dynamics of Hydrogen Bonds
and Ion Pairs Involving Lysine Side Chains of Proteins 37
Levani Zandarashvili, Alexandre Esadze, and Junji Iwahara
1. Introduction 38
2. NMR of Lysine Side-Chain Amino Groups 39
3. NMR Methods to Investigate Internal Motions of Lysine NH3+ Groups 44
4. NMR Methods to Investigate Hydrogen-Bonding Dynamics of
Lysine NH3+ Groups 54
5. Dynamics of Lysine Side Chains of Ubiquitin: Combined Use of NMR
and Computation 56
6. Ion-Pair Dynamics Involving Lysine Side Chains and Their Role
in Protein-DNA Association 66
7. Conclusions and Future Perspectives 74
Acknowledgment 75
References 76
3. Structure-Function Relationship of the Plant Photosynthetic
Pigment-Protein Complex LHCII Studied with Molecular
Spectroscopy Techniques 81
Wieslaw I. Gruszecki
1. Photosynthetic Antenna Function 82
2. Spectroscopic Studies on Photoprotection in LHCII 86
vi Contents
3. Conclusions 91
Acknowledgments 92
References 92
4. Combined Use of Optical Spectroscopy and Computational
Methods to Study the Binding and the Photoinduced
Conformational Modification of Proteins When NMR and
X-Ray Structural Determinations Are Not an Option 95
Lorenzo Brancaleon
1. Introduction 96
2. Photoactive Ligands 98
3. Protein Involvement 98
4. Nature-Mimicking Approach 100
5. Challenge of Artificial Approaches: Reversibility 102
6. Challenge of Artificial Approaches: Location of the Photoactive
Ligand in the Protein 103
7. Optical Spectroscopy Approach 105
8. Computational Methods for Electronic Optical Spectroscopy 113
9. Combination of Optical Spectroscopy and Computational Simulations 117
10. Resonance Raman Spectroscopy 117
11. Docking Simulations 123
12. Density Functional Theory 129
13. Application to the Binding of TSPP to Lactoglobulin 133
References 145
5. Enzyme Active Site Interactions by Raman/FTIR, NMR,
and Ab Initio Calculations 153
Hua Deng
1. Introduction 154
2. Relate Spectra to Structures and Thermodynamics by Empirical Correlations 155
3. Active Site Structures by Vibrational Spectroscopy and Ab Initio Analysis 157
4. Active Site Interactions by NMR and Ab Initio Calculations 175
5. Conclusion 178
Acknowledgments 178
References 178
6. Protein and Water Confined in Nanometer-Scale Reverse
Micelles Studied by Near Infrared, Terahertz, and Ultrafast
Visible Spectroscopies 183
Hiroshi Murakami
1. Introduction
2. Determination of the Structural Parameters of PCR Micelles
184
186
Contents
vii
3. THz Spectroscopy of PCR Micellar Solution 194
4. Ultrafast Internal Dynamics of PCR Micelles Studied by the use
of a Molecule Probe 203
5. Concluding Remark 207
Acknowledgments 207
References 208
7. Structure and Orientation of Interfacial Proteins Determined
by Sum Frequency Generation Vibrational Spectroscopy:
Method and Application 213
Shuji Ye, Feng Wei, Hongchun Li, Kangzhen Tian, and Yi Luo
1. Introduction 214
2. Theoretical Background of SFG-VS 217
3. Orientation Determination of Interfacial Protein Structures 219
4. Recent Progresses on the Determination of Protein Molecular
Structure and Orientation at Different Interfaces 238
5. Summary 248
Acknowledgments 249
Appendix A: Euler Transformation Between Different Coordinate Systems 249
Appendix B: Macroscopic (x, y, z) Coordinates of Different Secondary
Structures 250
Appendix C: The Full Name of Lipid Molecules 251
References 251
8. X-Ray Absorption Spectroscopy: A Tool to Investigate
the Local Structure of Metal-Based Anticancer
Compounds In Vivo 257
Alfred A. Hummer and Annette Rompel
1. Introduction 258
2. Physical Principles and Experimental Design 259
3. Data reduction and analysis 267
4. The Use of XANES and EXAFS Analysis in Biochemical, Biomedical,
and Bioinorganic Chemistry 272
5. Advantages and Limitations of XAS 295
6. Perspectives 299
7. Acknowledgments 300
References 30°
Author Index 307
Subject Index 327
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| spelling | Biomolecular spectroscopy advances from integrating experiments and theory ed. by Christo Z. Christov 1. ed. Amsterdam [u.a.] Elsevier, Acad. Press 2013 XII, 336 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Advances in protein chemistry and structural biology 93 Einzelaufnahme eines Zeitschr.-Bd. Spektroskopie (DE-588)4056138-0 gnd rswk-swf Biomolekül (DE-588)4135124-1 gnd rswk-swf Biomolekül (DE-588)4135124-1 s Spektroskopie (DE-588)4056138-0 s DE-604 Christov, Christo Z. Sonstige (DE-588)1017101043 oth HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=026865587&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Biomolecular spectroscopy advances from integrating experiments and theory Spektroskopie (DE-588)4056138-0 gnd Biomolekül (DE-588)4135124-1 gnd |
| subject_GND | (DE-588)4056138-0 (DE-588)4135124-1 |
| title | Biomolecular spectroscopy advances from integrating experiments and theory |
| title_auth | Biomolecular spectroscopy advances from integrating experiments and theory |
| title_exact_search | Biomolecular spectroscopy advances from integrating experiments and theory |
| title_full | Biomolecular spectroscopy advances from integrating experiments and theory ed. by Christo Z. Christov |
| title_fullStr | Biomolecular spectroscopy advances from integrating experiments and theory ed. by Christo Z. Christov |
| title_full_unstemmed | Biomolecular spectroscopy advances from integrating experiments and theory ed. by Christo Z. Christov |
| title_short | Biomolecular spectroscopy |
| title_sort | biomolecular spectroscopy advances from integrating experiments and theory |
| title_sub | advances from integrating experiments and theory |
| topic | Spektroskopie (DE-588)4056138-0 gnd Biomolekül (DE-588)4135124-1 gnd |
| topic_facet | Spektroskopie Biomolekül |
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