Lactic acid bacteria: biodiversity and taxonomy
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Chichester [u.a.]
Wiley
2014
|
| Ausgabe: | 1. publ. |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XX, 606 S. Ill., graph. Darst. |
| ISBN: | 9781444333831 |
Internformat
MARC
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| 245 | 1 | 0 | |a Lactic acid bacteria |b biodiversity and taxonomy |c ed. by Wilhelm H. Holzapfel ... |
| 250 | |a 1. publ. | ||
| 264 | 1 | |a Chichester [u.a.] |b Wiley |c 2014 | |
| 300 | |a XX, 606 S. |b Ill., graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
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| 689 | 0 | |C b |5 DE-604 | |
| 700 | 1 | |a Holzapfel, Wilhelm H. |4 edt | |
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| 999 | |a oai:aleph.bib-bvb.de:BVB01-026813001 | ||
Datensatz im Suchindex
| _version_ | 1804151451460567044 |
|---|---|
| adam_text | List of contributors
xiii
Acknowledgements
xv
List of abbreviations
xvi
Abbreviations for genera and note on pronunciations
xix
1
Introduction to the LAB
1
Wilhelm
H.
Holzapfel
and Brian
J.B.
Wood
1.1
The scope
1
1.2
A little history
7
1.3
Where are the boundaries?
9
2
Physiology of the LAB
13
Akihito Endo and Leon
M. T.
Dicks
2.1
Metabolism
13
2.2
Energy transduction and solute transport
20
3
Phylogenetics and systematics
31
Peter Vandamme, Katrien
De Bruyne
and Bruno Pot
3.1
Introduction
31
3.2
Phylogeny and polyphasic taxonomy of LAB
34
3.3
Conclusions and perspectives
39
4
Overview of the ecology and biodiversity of the LAB
45
Giorgio
Giraffa
4.1
Introduction
45
4.2
LAB ecology, diversity and metabolism
45
4.3
Importance of LAB in food and feed ecology and biotechnology
46
4.4
LAB as functional cultures
48
4.5
LAB with health-promoting properties
50
4.6
Concluding remarks
51
5
Comparative genomics of Lactobadllus and other LAB
55
Trudy M.
Wassenaar
and Oksana Lukjancenko
5.1
Introduction
55
5.2
Selection of LAB genomes for comparative analysis
57
vi
CONTENTS
5.3
Numerical comparisons of the selected genomes
58
5.4
Phylogeny of the 16S rRNA gene extracted from the genomes
63
5.5
Pan-genome and core genome of protein genes
63
5.6
Comparison of gene function categories
66
5.7
Conclusions
68
Section I The family Aerococcaceae
71
Paul A. Lawson
6
The genus Abiotrophia
75
Paul A. Lawson
6.1
Introduction and historical background
75
6.2
Description of the genus Abiotrophia
76
6.3
Differentiation of Abiotrophia species from other genera
76
6.4
Isolation, cultivation, ecology and medical importance
76
6.5
Species descriptions
78
7
The genus Aerococcus
81
Paul A. Lawson
7.1
Introduction and historical background
81
7.2
Description of the genus Aerococccus
81
7.3
Differentiation of Aerococcus species from other genera
82
7.4
Differentiation of species of the genus Aerococcus from one another
83
7.5
Isolation, cultivation, ecology and medical importance
84
7.6
Species descriptions
86
8
The genus Facklamia
91
Lesley Hoyles
8.1
Introduction
91
8.2
Differentiation of Facklamia species from other genera
91
8.3
Ecological, medical and industrial relevance of Facklamia species
92
8.4
Antimicrobial susceptibilities of members of the genus Facklamia
94
8.5
Differentiation between species of the genus Facklamia
95
8.6
Descriptions of the genus Facklamia and its species
95
9
Minor genera of the Aerococcaceae (Doloskoccus, Eremococcus, Globkatella, Ignavigranum)
99
Melanie
Much, Cho Gyu-Sung, Antonio
Gálvez
and Charles M.A.P. Franz
9.1
Historical background
99
9.2
Phenotypic differentiation of the minor genera of the Aerococcaceae from other genera
100
9.3
Genotypie
delineation of the minor genera of the Aerococcaceae
101
9.4
Isolation, cultivation, ecology and medical importance
102
9.5
Description of the minor genera of the Aerococcaceae and list of species
102
Section II The family Carnobacteriaceae
107
Elena V. Pikuta
10
The genus Carnobacterium
109
Elena V. Pikuta and Richard B. Hoover
10.1
Historical background and chronology of nomenclature
109
10.2
Définition
of the genus
Carnobađerium
110
10.3
Relationship to other groups 111
10.4
Future perspectives for characterization
112
10.5
Techniques and growth requirements for cultivation
112
10.6
Biodiversity
112
10.7
Importance of the genus and particular species
113
10.8
Other applications and future perspectives
115
10.9
Description of species
115
CONTENTS
vii-
11
The genus Mariniiactibacillus
125
Morio
Ishikawa and Kazuhide Yamasato
11.1
Introduction
125
11.2
General and
taxonomic
characters
125
11.3
Phylogenetic affiliation of Mariniiactibacillus species
126
11.4
Physiological properties
127
11.5
Differentiation of Mariniiactibacillus from other related species
127
11.6
Lactic acid fermentation and aerobic metabolism of glucose
127
11.7
Ecology and isolation methods
129
11.8
Description of the species of the genus Mariniiactibacillus
132
12
The genus Tnchococcus
135
Elena V. Pikuta and Richard B. Hoover
12.1
Historical background and chronology of nomenclature for the Tnchococcus species
135
12.2
Definition of the genus Tnchococcus
136
12.3
Relationship to other genera within the Carnobacteriaceae and other LAB families
136
12.4
Future
taxonomic
perspectives
139
12.5
Techniques and growth requirements for cultivation of Tnchococcus species
139
12.6
Biodiversity
139
12.7
Importance of the genus and particular species
140
12.8
Species descriptions
141
13
The genus Alkalibacterium
147
Isao Yumoto, Kikue Hirota and Kenji Nakajima
13.1
Introduction
147
13.2
Taxonomy
148
13.3
Description of the genus
148
13.4
Enrichment and isolation procedures
148
13.5
Natural habitats
149
13.6
Acid production
150
13.7
Identification of Alkalibacterium species
150
13.8
Overview of the current situation for this genus
150
13.9
Description of species
153
13.10
Concluding remarks
156
14
Minor genera of the Carnobactenaceae: Ailofustis, AUoiococcus, Atopobacter, Atopococcus, Atopostipes,
Bavarikoccus, Desemzia, Dolosigranulum, Granulkatella, Isobaculum and Lacticigenium
159
Ulrich
Schilíinger
and Akihito Endo
14.1
Introduction
159
14.2
Taxonomy
159
14.3
Biodiversity of each genus
162
14.4
Practical importance
163
14.5
Species descriptions
164
Section III The family Enterococcaceae
171
Povel Švec
and Charles M.A.P. Franz
15
The genus Enterococcus
175
Pavel
Švec
and Charles M.A.P. Franz
15.1
Historical background and chronology of nomenclature
175
15.2
Phenotypic differentiation of the genus Enterococcus
178
15.3
Genotypie
delineation of the genus Enterococcus
178
15.4
Phylogenetic structure within the genus Enterococcus
179
15.5
Isolation and cultivation
179
15.6
Identification of Enterococcus spp.
179
15.7
Importance of the genus and particular species
182
15.8
Species of the genus Enterococcus
186
viii CONTENTS
18.1
Introduction
18.2
Phylogeny
18.3
Morphology
18.4
Growth characteristics
18.5
Practical importance
18.6
Description of species
16
The genus Tetragenococcus
213
Annelies
Juste, Bart Lievens, Hans Rediers and Kris A.
Willems
16.1
Introduction 213
16.2
Phenotypic characteristics of the genus Tetragenococcus
215
16.3
Genotypie
characteristics of the genus Tetragenococcus
217
16.4
Industrial relevance of the genus Tetragenococcus
221
16.5
Description of species
222
17
The genus Vagococcus
229
Paul A. Lawson
17.1
Introduction and historical background
229
17.2
Description of the genus Vagococcus
229
17.3
Differentiation of Vagococcus species from other genera
230
17.4
Differentiation of species of the genus Vagococcus from one another
231
17.5
Isolation, cultivation, ecology and medical importance
231
17.6
Species descriptions
232
18
Minor genera of the Enterococcaceae (Catellkoccus, Melissococcus and Pilibacter)
239
Leon
MJ.
Dicks, Akihito Endo and Carol A. Van
Reenen
239
239
240
240
241
241
Section IV The family Lactobadllaceae
245
Giovanna E. Felis
and Bruno Pot
19
The genus LactobaciUus
249
Bruno Pot,
Giovanna E.
Felis,
Katríen
De
Bruyne, Effie Tsakalidou,
Konstantinos
Papadimitriou,
Jörgen Leisner
and Peter Vandamme
19.1
Historical background
249
19.2
LactobaciUus metabolism
250
19.3
The taxonomy of the genus
Lađobadllus
282
19.4
The current phylogenetic structure of the genus
Ladobacillus
286
19.5
Food and health applications of the genus
Lađobadllus
293
19.6
Short descriptions of the validly published species of the genus Lactobaallus
294
19.7
LactobaciUus species awaiting validation pending publication of the manuscript (March
2013) 327
19.8
Lađobadllus
species and subspecies that have been renamed after their original description
329
19.9
Lactobaallus species that have never been validly named, but whose names nonetheless appear in the literature,
and their current names
335
20
The genus Paralactobaallus
355
Jörgen J.
Leisner and Bruno Pot
20.1
Introduction
355
20.2
Defining the genus as phenotype and genotype
355
20.3
Biodiversity within the genus and species based on phenotype
356
20.4
Importance of the genus and particular species
356
20.5
Description of species
357
21
The genus Pediococcus
359
Charles M.A.P. Franz, Akihito Endo,
Hikmate
Abriouel, Carol A. Van
Reenen,
Antonio
Gáívez
and Leon M.T. Dicks
ZÌA
Historical background and chronology of nomenclature
359
21.2
Phenotypic differentiation of the genus Pediococcus
360
CONTENTS ix
22.1
Introduction
22.2
Phylogenetic
relationships
22.3
Morphology
22.4
Biochemical characteristics
22.5
Physiological characteristics
22.6
Habitat
22.7
Species in the genus Fructobadllus
21.3
Genotypie
delineation of the genus Pediococcus
360
21.4
Phylogenetic structure within the genus Pediococcus
361
21.5
Isolation and cultivation
362
21.6
Identification of Pediococcus spp
362
21.7
Importance of the
genus
and particular species
365
21.8
Species of the genus Pediococcus
366
Section V The family Leuconostocaceae
377
Akihito Endo, Leon M.T. Dicks, Johanna
Björkroth
and
Wilhelm
H.
Holzapfel
22
The genus Fructobadllus
381
Akihito Endo and Leon M.T. Dicks
381
381
383
383
386
386
386
23
The genus Leuconostoc
391
Johanna
Björkroth,
Leon M. I Dicks, Akihito Endo and
Wilhelm
H.
Holzapfel
23.1
Historical background, chronology of nomenclature and relationship to other LAB
391
23.2
Definition of the genus as phenotype
392
23.3
Biodiversity within the genus based on phenotype
393
23.4
Genomic studies and genotyping of Leuconostoc
393
23.5
Importance of the genus and particular Leuconostoc species
394
23.6
Description of species of the genus Leuconostoc
395
24
The genus Oenococcus
405
Akihito Endo and Leon M.T. Dicks
24.1
Introduction
405
24.2
Phytogeny and evolution
405
24.3
Morphology
406
24.4
Growth characteristics
407
24.5
Intraspecies diversity
409
24.6
Practical importance
410
24.7
Stress response
410
24.8
Description of species in the genus Oenococcus
412
25
The genus
Weissella 417
Johanna
Björkroth, Leon
M.T. Dicks and Akihito Endo
25.1
Historical background, chronology of nomenclature and relationship to other LAB
417
25.2
Defining the genus as phenotype and genotype
417
25.3
Biodiversity within the genus and within particular species based on phenotype
419
25.4
Importance of the genus and particular species
419
25.5
Descriptions of species in the genus
Weisella 421
26
The genus Lactococcus
429
Wonyong Kim
26.1
Introduction
429
26.2
Defining the genus as phenotype and genotype
429
26.3
Biodiversity within the genus based on phenotype
433
26.4
Biodiversity within species based on phenotype
434
26.5
Importance of the genus Lactococcus and species
436
26.6
Description of species of the genus Lactococcus
437
CONTENTS
Section VI The family Streptococcaceae
445
Maret
du Toit,
Melanie
Huch, Gyu-Sung Cho and Charles M.A.P.
Franz
27
The genus Lactovum
447
Harold L. Drake
27.1
Introduction
447
27.2
PhyLogeny and taxonomy of Lactovum
447
27.3
Morphology of Lactovum
448
27.4
Soil: the origin of Lactovum
449
27.5
Growth properties and substrate range of Lactovum
449
27.6
Physiology of Lactovum
451
27.7
Genus description
452
27.8
Conclusion
453
28
The genus Streptococcus
457
Maret
du Toit,
Melanie Huch, Gyu-Sung Cho and Charles M.A.P. Franz
28.1
Historical background and chronology of nomenclature
457
28.2
Phenotypic differentiation of the genus Streptococcus
458
28.3
Genotypie
delineation of the genus Streptococcus
458
28.4
Phylogenetic structure within the genus Streptococcus
459
28.5
Isolation and cultivation
465
28.6
Identification of Streptococcus spp.
466
28.7
Importance of the genus and particular species
475
28.8
Species of the genus Streptococcus
476
Section
VII
Physiologically related genera
507
Wilhelm
H.
Holzapfel
and Brian
J.B.
Wood
29
The genera Bifldobactenum, Parascardovia and Scardovia
509
Paola
Mattareüi
and Bruno Biavati
29.1
Historical background
509
29.2
Taxonomy of the bifidobacteria
514
29.3
Ecology
521
29.4
Health benefits
522
29.5
Industrial applications
523
29.6
Other applications
523
29.7
Description of species
524
29.8
Bifidobacterium: concluding remarks
534
29.9
The genera Parascardovia and Scardovia
534
30
The genus Sporolactobacillus
543
Stephanie Doores
30.1
Introduction
543
30.2
Defining the genus as phenotype and genotype
544
30.3
Importance of the genus and particular species
547
30.4
Description of species of the genus Sporolactobacillus
548
31
The genera Bacillus, Geobaallus and Halobadllus
555
Hikmate
Abriouel,
Nabil
Benomar, Melanie
Huch, Charles M.A.P. Franz and Antonio
Gálvez
31.1
Introduction
555
31.2
The genus Bacillus
556
31.3
Related genera in the family Bacillaceae
563
31.4
Food, health and environmental applications
564
31.5
Concluding remarks
565
CONTENTS xi
32
The genera
HalolactìbaciUus
and
Paralìobatìllus
571
Kazuhide Yamasato and Mono Ishikawa
32.1
Introduction
571
32.2
The genus Haloiactibadllus
571
32.3
ParaliobadUus ryukyuensis
578
Appendix: Guidelines for characterizing LAB,
bifìdobacterìa
and related genera for
taxonomic
purposes
583
Paola
Mattarelli, Bruno Biavati, Walter
Hammes
and
Wilhelm
H.
Holzapfel
A.I
Introduction
583
Α.
2
Phenotypic criteria
584
Α.
3
Genotypie
criteria
588
A.4
Additional
criteria
589
A.5
Concluding remarks
591
Index
593
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| publisher | Wiley |
| record_format | marc |
| spelling | Lactic acid bacteria biodiversity and taxonomy ed. by Wilhelm H. Holzapfel ... 1. publ. Chichester [u.a.] Wiley 2014 XX, 606 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Milchsäurebakterien (DE-588)4169924-5 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Milchsäurebakterien (DE-588)4169924-5 s b DE-604 Holzapfel, Wilhelm H. edt Digitalisierung UB Regensburg - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=026813001&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Lactic acid bacteria biodiversity and taxonomy Milchsäurebakterien (DE-588)4169924-5 gnd |
| subject_GND | (DE-588)4169924-5 (DE-588)4143413-4 |
| title | Lactic acid bacteria biodiversity and taxonomy |
| title_auth | Lactic acid bacteria biodiversity and taxonomy |
| title_exact_search | Lactic acid bacteria biodiversity and taxonomy |
| title_full | Lactic acid bacteria biodiversity and taxonomy ed. by Wilhelm H. Holzapfel ... |
| title_fullStr | Lactic acid bacteria biodiversity and taxonomy ed. by Wilhelm H. Holzapfel ... |
| title_full_unstemmed | Lactic acid bacteria biodiversity and taxonomy ed. by Wilhelm H. Holzapfel ... |
| title_short | Lactic acid bacteria |
| title_sort | lactic acid bacteria biodiversity and taxonomy |
| title_sub | biodiversity and taxonomy |
| topic | Milchsäurebakterien (DE-588)4169924-5 gnd |
| topic_facet | Milchsäurebakterien Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=026813001&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT holzapfelwilhelmh lacticacidbacteriabiodiversityandtaxonomy |