Genome evolution of photosynthetic bacteria:
Gespeichert in:
| Weitere Verfasser: | |
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| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Amsterdam [u.a.]
Elsevier [u.a.]
2013
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| Ausgabe: | 1. ed. |
| Schriftenreihe: | Advances in botanical research
66 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XVII, 425 S., [6] Taf. Ill., graph. Darst. |
| ISBN: | 9780123979230 |
Internformat
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| 245 | 1 | 0 | |a Genome evolution of photosynthetic bacteria |c vol. ed. J. Thomas Beatty |
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Datensatz im Suchindex
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| adam_text | ADVANCES IN
BOTANICAL RESEARCH
Genome Evolution of
Photosynthetic Bacteria
Volume Editor
J THOMAS BEATTY
Department of Microbiology and Immunology,
University of British Columbia,
Vancouver, BC, Canada
ELSEVIER
AMSTERDAM • BOSTON • HEIDELBERG • LONDON
NEW YORK • OXFORD • PARIS • SAN DIEGO
SAN FRANCISCO • SINGAPORE • SYDNEY • TOKYO
Academic Press is an imprint of Elsevier
CONTENTS
Preface xi
Contributors xv
1 A Time to Scatter Genes and a Time to Gather Them: Evolution
of Photosynthesis Genes in Bacteria 1
Armen Y Mulkidjanian, Michael Y Galperin
1 Introduction 1
2 Photosynthesis Genes of Cyanobacteria and Plants 3
3 Evolution of the Photosynthesis Gene Set 5
4 Photosynthesis and the Emergence of Life 21
Acknowledgements 26
References 26
2 Molecular Markers for Photosynthetic Bacteria and Insights
into the Origin and Spread of Photosynthesis 37
Radhey S Gupta
1 Introduction 38
2 Molecular Signatures for Different Phyla of Phoiosynthetic Bacteria 41
3 Origin and Spread of Photosynthesis Based Upon Molecular Signatures
in Key BChl Biosynthesis Proteins 52
Abbreviations 59
Acknowledgements 59
References 60
3 Properties and Evolutionary Implications of the Heliobacterial
Genome 67
W Matthew Sattley, Wesley D Swingley
1 Introduction 68
2 Heliobacterial Photosynthesis 76
3 Heliobacteria as Phototrophic Clostridia 87
4 Thoughts on Heliobacteria and the Evolution of Photosynthesis 91
Acknowledgements 93
References 93
C ontents
4 Green Bacteria: Insights into Green Bacterial Evolution through
Genomic Analyses 99
Donald A Bryant, Zhenfeng Liu
1 Introduction 100
2 Sulfur Metabolism 105
3 Reverse TCA Cycle 106
4 Bacteriochlorophyll Biosynthesis in Green Bacteria 108
5 Chlorosome Structure and Assembly 116
6 Type-1 RCs 120
7 Evolution of Green Bacteria 123
8 Granick Hypothesis 126
9 Thoughts on Evolution of Photosynthesis 130
Abbreviations 138
Acknowledgements 139
References 139
5 Comparison of Photosynthesis Gene Clusters Retrieved from
Total Genome Sequences of Purple Bacteria 151
Sakiko Nagashima, Kenji V P Nagashima
1 Introduction 152
2 Retrieval of Photosynthesis Gene Sequences of Purple Bacteria
From Genomic DNA Databases 154
3 Sequence Comparison of Photosynthetic Gene Products 160
4 Comparison of Gene Arrangements in PGCs of Purple Bacteria 164
5 Phylogenetic Analyses of Genes in PGCs and Horizontal Gene Transfer 167
6 Conclusion and Perspectives 173
Acknowledgements 174
References 174
6 The Living Genome of a Purple Nonsulfur Photosynthetic
Bacterium: Overview of the Rhodobacter sphaeroides
Transcriptome Landscapes 179
Mark Gomelsky, Jill H Zeilstra-Ryalls
1 Transcriptomics as a Tool to Assess Metabolic Changes and Understand
Regulatory Networks 180
2 Metabolic Versatility Requires Transcriptome Flexibility: R sphaeroides
Transcriptome Landscapes of Diverse Growth Modes 181
Contents vii
3 The Effects of 02 and Light: A Transcriptome Perspective 187
4 The Key 02- and Light-Responsive Regulons 189
5 Conclusions and Perspectives 196
Acknowledgements 197
References 198
7 The Evolution of the Purple Photosynthetic Bacterial
Light-Harvesting System 205
Sarah L Henry, Richard J Cogdell
1 Introduction 205
2 Method 214
3 Results of the Phylogenetic Analysis 215
4 Discussion 221
Supplementary Data 224
Acknowledgements 224
References 224
8 Role and Evolution of Endogenous Plasmids in Photosynthetic
Bacteria 227
John C Willison, Jean-Pierre Magnin
1 Introduction 228
2 Occurrence and Distribution of Endogenous Plasmids in the Anaerobic
Anoyxgenic Phototrophic Bacteria 230
3 Functional Roles of Endogenous Plasmids in Phototrophic Bacteria 243
4 Evolution of Endogenous Plasmids 256
5 Conclusions and Perspectives 259
Acknowledgements 260
References 260
9 Evolution of Bacteriophytochromes in Photosynthetic Bacteria 267
Miroslav Papiz, Dom Bellini
1 Introduction 268
2 Variation in the Bacteriophytochrome Output Domains 269
3 Distribution of the Different Types of Bacteriophytochiomes 275
4 Bacteriophytochromes in Rhodopseudomonas polustris 277
5 Future Perspectives 283
Acknowledgements 284
References 284
viii Contents
10 Iron Homeostasis in the Rhodobacter Genus 289
Sebastien Zappa, Carl E Bauer
1 Introduction 290
2 Ferrous Iron Uptake 292
3 Ferric Iron Uptake 299
4 Iron ABC Transporters 303
5 Fleme Iron Usage 304
6 Managing Iron Toxicity 308
7 Iron Homeostasis Regulators 313
8 Conclusion 317
References 319
11 Genes Associated with the Peculiar Phenotypes of the Aerobic
Anoxygenic Phototrophs 327
Vladimir Yurkov, Elizabeth Hughes
1 Introduction 328
2 Abundance and Diversity Through Culturing and Sequencing 330
3 Phylogeny and Speculations on Evolution 335
4 Nutritional Requirements, Carbon Metabolism and the Associated
Metabolic Pathways 338
5 Photosynthetic Pigments and their Association with the Photosynthetic
Operon 343
6 Photosynthetic Apparatus Organisation and Genes 346
7 Unsolved Mysteries and Concluding Remarks 353
Acknowledgements 353
References 353
12 Evolutionary Divergence of Marine Aerobic Anoxygenic
Phototrophic Bacteria as Seen from Diverse Organisations
of Their Photosynthesis Gene Clusters 359
Qiang Zheng, Michal Koblizek, J Thomas Beatty, Nianzhi Jiao
1 Introduction 360
2 Diverse Structures of PGCs 362
3 Expression of PGC 369
4 Evolution of AAPB 373
5 Summary and Future Perspectives 379
Acknowledgement 380
References 380
Contents ix
13 Regressive Evolution of Photosynthesis in the Roseobacter Clade 385
Michal Koblizek, Yonghui Zeng, Ales Horak, Miroslav Obornik
1 Introduction 386
2 Photosynthesis Gene Cluster 389
3 The Mode of Evolution 391
4 Horizontal Gene Transfer 395
5 When Did Roseobacters Evolve? 396
6 Evolutionary Scenario 398
7 Conclusions 401
Acknowledgements 402
References 402
Index 407
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| spelling | Genome evolution of photosynthetic bacteria vol. ed. J. Thomas Beatty 1. ed. Amsterdam [u.a.] Elsevier [u.a.] 2013 XVII, 425 S., [6] Taf. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Advances in botanical research 66 Evolution (DE-588)4071050-6 gnd rswk-swf Photosynthese (DE-588)4045936-6 gnd rswk-swf Photosynthese (DE-588)4045936-6 s Evolution (DE-588)4071050-6 s DE-604 Beatty, J. Thomas (DE-588)103516440X edt Advances in botanical research 66 (DE-604)BV002573746 66 HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=026055171&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
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| title | Genome evolution of photosynthetic bacteria |
| title_auth | Genome evolution of photosynthetic bacteria |
| title_exact_search | Genome evolution of photosynthetic bacteria |
| title_full | Genome evolution of photosynthetic bacteria vol. ed. J. Thomas Beatty |
| title_fullStr | Genome evolution of photosynthetic bacteria vol. ed. J. Thomas Beatty |
| title_full_unstemmed | Genome evolution of photosynthetic bacteria vol. ed. J. Thomas Beatty |
| title_short | Genome evolution of photosynthetic bacteria |
| title_sort | genome evolution of photosynthetic bacteria |
| topic | Evolution (DE-588)4071050-6 gnd Photosynthese (DE-588)4045936-6 gnd |
| topic_facet | Evolution Photosynthese |
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