Genome-wide association studies and genomic prediction:
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
New York [u.a.]
Humana Press
2013
|
| Schriftenreihe: | Methods in molecular biology
1019 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XI, 566 S. graph. Darst. |
| ISBN: | 9781627034463 1627034463 9781627034470 |
Internformat
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Datensatz im Suchindex
| _version_ | 1804150268602875904 |
|---|---|
| adam_text | Genome-Wide Association
Studies and Genomic Prediction
Edited by
Cedric Gondro
The Center for Genetic Analysis and Applications,
University of New England, Armidale, NSW, Australia
Julius van der Werf
School of Environmental and Rural Science,
University of New England, Armidale, NSW, Australia
Ben Hayes
Biosciences Research Division,
Department of Primary Industries, Bundoora, VIC, Australia
Humana Press
Contents
Preface v
Contributors ix
1 R for Genome-Wide Association Studies 1
Cedric Gondro, Laercio R Porto-Neto, and Seung Hwan Lee
2 Descriptive Statistics of Data: Understanding the Data Set
and Phenotypes of Interest 19
Sonja Dominik
3 Designing a GVVAS: Power, Sample Size, and Data Structure 37
Roderick D Ball
4 Managing Large SNP Datasets with SNPpy 99
Faheem Mitba
5 Quality Control for Genome-Wide Association Studies 129
Cedric Gondro, Seung Hwan Lee, Hak Kyo Ixe, and Laercio R Porto-Neto
6 Overview of Statistical Methods for Genome-Wide Association
Studies (GWAS) 149
Ben Hayes
7 Statistical Analysis of Genomic Data 171
Roderick D Ball
8 Using PLINK for Genome-Wide Association Studies (GWAS)
and Data Analysis 193
Miguel E Renteria, Adrian Cortes, and Sarah E Medland
9 Genome-Wide Complex Trait Analysis (GCTA): Methods, Data Analyses,
and Interpretations 215
Jian Yang, Sang Hong Lee, Michael E Goddard, and Peter M Visscher
10 Bayesian Methods Applied to GWAS 237
Rohan L Fernando and Dorian Garrick
11 Implementing a QTL Detection Study (GWAS) Using Genomic
Prediction Methodology 275
Dorian J Garrick and Rohan L Fernando
12 Genome-Enabled Prediction Using the BLR ( Bayesian Linear Regression)
R-Package 299
Gustavo de los Campos, Paulino Perez, Ana I Vazquez, and Jose Crossa
13 Genomic Best Linear Unbiased Prediction (gRLUP) for the Estimation
of Genomic Breeding Values 321
Samuel A Clark and Julius van der Werf
14 Detecting Regions of Homozygosity to Map the Cause of Recessively
Inherited Disease 331
James W Kijas
15 Use of Ancestral Haplotypes in Genome-Wide Association Studies 347
Tom Druet and Frederic Farnir
vii
viii Contents
16 Genotype Phasing in Populations of Closely Related Individuals 381
John M Hickey
17 Genotype Imputation to Increase Sample Size in Pedigreed Populations 395
John M Hickey, Matthew A Cleveland, Christian Maltecca,
Gregor Gorjanc, Birgit Gredler, and Andreas Kranis
18 Validation of Genome-Wide Association Studies (GWAS) Results 411
John M Henshall
19 Detection of Signatures of Selection Using FST 423
Laercio R Porto-Neto, Seung Hwan Lee, Hak Kyo Lee, and Cedric Gondro
20 Association Weight Matrix: A Network-Based Approach Towards
Functional Genome-Wide Association Studies 437
Antonio Reverter and Marina R S Fortes
21 Mixed Effects Structural Equation Models and Phenotypic Causal Networks 449
Bruno Dourado Valente and Guilherme Jordao de Magalhdes Rosa
22 Epistasis, Complexity, and Multifactor Dimensionality Reduction 465
Qinxin Pan, Ting Hu, and Jason H Moore
23 Applications of Multifactor Dimensionality Reduction to Genome-Wide
Data Using the R Package MDR 479
Stacey Winham
24 Higher Order Interactions: Detection of Epistasis Using Machine
Learning and Evolutionary Computation 499
Ronald M Nelson, Marcin Kierczak, and Orjan Carlborg
25 Incorporating Prior Knowledge to Increase the Power of Genome-Wide
Association Studies 519
Ashley Petersen, Justin Spratt, and Nathan L Tintle
26 Genomic Selection in Animal Breeding Programs 543
Julius van der Werf
Index 563
|
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| series | Methods in molecular biology |
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| spelling | Genome-wide association studies and genomic prediction ed. by Cedric Gondro ... New York [u.a.] Humana Press 2013 XI, 566 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 1019 Springer protocols Genanalyse (DE-588)4200230-8 gnd rswk-swf Genom (DE-588)4156640-3 gnd rswk-swf Genetische Variabilität (DE-588)4264352-1 gnd rswk-swf Allel (DE-588)4271150-2 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Genom (DE-588)4156640-3 s Genanalyse (DE-588)4200230-8 s Allel (DE-588)4271150-2 s Genetische Variabilität (DE-588)4264352-1 s b DE-604 Gondro, Cedric Sonstige oth Methods in molecular biology 1019 (DE-604)BV035362695 1019 HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025937359&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Genome-wide association studies and genomic prediction Methods in molecular biology Genanalyse (DE-588)4200230-8 gnd Genom (DE-588)4156640-3 gnd Genetische Variabilität (DE-588)4264352-1 gnd Allel (DE-588)4271150-2 gnd |
| subject_GND | (DE-588)4200230-8 (DE-588)4156640-3 (DE-588)4264352-1 (DE-588)4271150-2 (DE-588)4143413-4 |
| title | Genome-wide association studies and genomic prediction |
| title_auth | Genome-wide association studies and genomic prediction |
| title_exact_search | Genome-wide association studies and genomic prediction |
| title_full | Genome-wide association studies and genomic prediction ed. by Cedric Gondro ... |
| title_fullStr | Genome-wide association studies and genomic prediction ed. by Cedric Gondro ... |
| title_full_unstemmed | Genome-wide association studies and genomic prediction ed. by Cedric Gondro ... |
| title_short | Genome-wide association studies and genomic prediction |
| title_sort | genome wide association studies and genomic prediction |
| topic | Genanalyse (DE-588)4200230-8 gnd Genom (DE-588)4156640-3 gnd Genetische Variabilität (DE-588)4264352-1 gnd Allel (DE-588)4271150-2 gnd |
| topic_facet | Genanalyse Genom Genetische Variabilität Allel Aufsatzsammlung |
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