The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG:
Gespeichert in:
| 1. Verfasser: | |
|---|---|
| Format: | Abschlussarbeit Buch |
| Sprache: | English |
| Veröffentlicht: |
2012
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| Schlagworte: | |
| Online-Zugang: | Volltext https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20121025-1109993-0-3 Inhaltsverzeichnis |
| Beschreibung: | Zsfassung in dt. Sprache |
| Beschreibung: | IX, 131 Bl. Ill., graph. Darst. |
Internformat
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| 245 | 1 | 0 | |a The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG |c Ponduranga Vara Prasad Vaddepalli |
| 264 | 1 | |c 2012 | |
| 300 | |a IX, 131 Bl. |b Ill., graph. Darst. | ||
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| 502 | |a München, Techn. Univ., Diss., 2012 | ||
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Datensatz im Suchindex
| _version_ | 1804150013344874496 |
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| adam_text | IMAGE 1
TABLE O F CONTENTS
1 INTRODUCTION 1
1.1 MERISTEMS, CELL-TO-CELL COMMUNICATION AND TISSUE MORPHOGENESIS .. 1
1.2 ROLE O F PLASMODESMATA IN CELL-TO-CELL COMMUNICATION O F PLANTS 3
1.2.1 NON-SELECTIVE MOVEMENT OF GFP AND LEAFY 3
1.2.2 SELECTIVE MOVEMENT O F TRANSCRIPTION FACTORS 4
1.3 RECEPTOR KINASES IN COMMUNICATION 6
1.3.1 RECEPTOR LIKE KINASES 6
1.3.2 RLKS ARE INVOLVED IN VARIOUS SIGNALING PATHWAYS 6
1.4 LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASES 9
1.4.1 SHOOT APICAL MERISTEM MAINTENANCE 9
1.4.2 EPIDERMAL MAINTENANCE AND CELL SPECIFICATION 10
1.4.3 ERECT A, A PLEIOTROPIC DEVELOPMENTAL REGULATOR 11
1.5 THE ATYPICAL LRR-RLK, STRUBBELIG REGULATES TISSUE MORPHOGENESIS ....
13
1.5.1 SUB CAN ACT IN NON-CELL-AUTONOMOUS FASHION 14
1.5.2 SIGNALING THROUGH ATYPICAL KINASES IN PLANTS 15
1.5.3 NOVEL COMPONENTS IN SUB MEDIATED SIGNALING 15
1.5.4 QUIRKY, A STRUBBELIG-LIKE MUTANT (SLM) 18
1.6 OBJECTIVES 19
2 MATERIALS AND METHODS 20
2.1 PLANT WORK 20
2.2 SUB TILLING 20
2.3 MAP-BASED CLONING OF QKY 20
2.4 RECOMBINANT DNA WORK 21
2.5 GENERATION OF VARIOUS SUB CONSTRUCTS 22
2.5.1 WILD-TYPE SUB::C/GSUB:EGFP REPORTER CONSTRUCTS 22
2.5.2 WILD-TYPE N-TERMINAL TAGGED SUB::EGFP:CSUB FUSION CONSTRUCT 22
2.5.3 MUTANT SUB::C/GSUBMUT:EGFP REPORTER CONSTRUCTS 23
2.5.4 GENERATION O F SUB INTRON DELETION CONSTRUCTS 24
2.6 GENERATION O F VARIOUS QKY CONSTRUCTS 24
2.6.1 QKY PJETL 24
2.6.2 QKY::QKY PCAMBIA 2300 25
2.6.3 MCHERRY:QKY PJETL 25
2.6.4 QKY: :MCHERRY :QKY PCAMBIA 2300 25
VI
HTTP://D-NB.INFO/1036387976
IMAGE 2
TABLE O F CONTENTS
2.6.5 QKY: :EGFP:QKY PCAMBIA 2300 25
2.6.6 QKY: :T-SAPPHIRE:QKY PCAMBIA 2300 26
2.6.7 QKY:: QKY RMCHERRY PCAMBIA 2300 26
2.6.8 QKY::GUS PCAMBIA 2300 26
2.6.9 GENERATION O F QKY YEAST TWO HYBRID CLONES 26
2.6.10 GENERATION OF RECOMBINANT PROTEIN CONSTRUCTS 26
2.7 GENERATION OF TRANSGENIC PLANTS 27
2.8 QUANTITATIVE REAL-TIME PCR ANALYSIS 27
2.9 EXPRESSION AND PURIFICATION OF RECOMBINANT PROTEINS 27
2.10 PHOSPHOLIPID BINDING ASSAY 28
2.11 BIOINFORMATIC ANALYSIS .) 28
2.12 ANALYSIS O F NATURAL VARIATION AT THE STRUBBELIG PROTEIN LEVEL 28
2.13 HOMOLOGY MODELING 29
2.14 IN SITU HYBRIDIZATION 29
2.15 GUS HISTO-CHEMISTRY 30
2.16 CONFOCAL LASER SCANNING MICROSCOPY (CLSM) 30
2.17 CALLOSE STAINING 30
2.18 DRUG TREATMENTS 30
2.19 ACCESSION NUMBERS 31
3 RESULTS 32
3.1 STRUCTURE-FUNCTION ANALYSIS OF STRUBBELIG 32
3.1.1 SUB STRUCTURE PREDICTION BY HOMOLOGY MODELLING 32
3.1.2 IDENTIFICATION AND ANALYSIS OF NOVEL SUB ALLELES 34
3.1.3 HOMOLOGY MODELING OF MUTANT SUB/LRR AND KINASE DOMAINS 37
3.1.4 KINASE ACTIVITY IS NOT ESSENTIAL FOR SUB FUNCTION 38
3.1.5 NONFUNCTIONAL SUB::CSUBMUT:EGFP REPORTERS FAIL TO EXPRESS
DETECTABLE
SIGNALS 39
3.1.6 SUB INTRONIC SEQUENCES POSITIVELY INFLUENCE SUB::SUB:EGFP SIGNAL
STRENGTH 43
3.1.7 . THE PRESENCE OF MULTIPLE INTRONS IS ESSENTIAL FOR SUB BROAD
EXPRESSION 45
3.1.8 EQUIVALENT SUB::CSUBMUT:EGFP AND SUB::GSUBMUT:EGFP CONSTRUCTS
BEHAVE IN A GENETICALLY IDENTICAL MANNER 46
VII
IMAGE 3
TABLE O F CONTENTS
3.1.9 VARIOUS MUTANT SUB VARIANTS ARE RETAINED IN THE ENDOPLASMIC
RETICULUM
AND DEGRADED BY ERAD 47
3.1.10 SUB UNDERGOES MLN4924-SENSITIVE DEGRADATION 50
3.2 MOLECULAR CHARACTERIZATION OF QUIRKY 53
3.2.1 MAPPING AND MOLECULAR IDENTIFICATION OF QUIRKY 53
3.2.2 QUIRKY, A NOVEL MULTIPLE C2 DOMAIN CONTAINING TRANSMEMBRANE
PROTEIN
(MCTP) 54
3.2.3 BIOCHEMICAL CHARACTERIZATION OF QUIRKY C2 DOMAINS 56
3.2.4 Q UIRKY EXPRESSES IN VARIOUS PLANT ORGANS 57
3.2.5 QUIRKY IS LOCALIZED TO PLASMODESMATA 58
3.2.6 TM DOMAINS OF QKY ARE IMPORTANT FOR PLASMODESMATA LOCALIZATION 61
3.2.7 QUIRKY IS NOT SENSITIVE TO BFA TREATMENT 63
3.3 THE ROLE O F QKY IN SUB MEDIATED INTER-CELLULAR SIGNALING 65
3.3.1 AN EXTRA COPY OF SUB CAN PARTIALLY RESCUE QKY PHENOTYPE 65
3.3.2 INTERNALIZATION AND BFA SENSITIVE RECYCLING O F SUB IS INDEPENDENT
OF
QKY 67
3.3.3 SUB AND QKY INTERACT IN YEAST 68
3.3.4 IMMUNO-ELECTRON MICROSCOPY REVEALS PD LOCALIZATION OF SUB 69
3.3.5 QKY DOES NOT AFFECT NON-TARGETED MOVEMENT OF MOLECULES 70
3.3.6 SUB AND QKY ARE LOCATED AT THE CELL PLATE 73
4 DISCUSSION 75
4.1 STRUCTURE-FUNCTION ANALYSIS OF STRUBBELIG 75
4.1.1 SUB ACCEPTS A SURPRISING AMOUNT OF SEQUENCE VARIATION 75
4.1.2 LOSS-OF-FUNCTION MUTATIONS IN SUB LEADS TO ERAD 77
4.1.3 INTRONS MEDIATE BROAD EXPRESSION OF SUB 79
4.1.4 MULTIPLE MECHANISMS CONTROL SUB PROTEIN LEVELS 81
4.2 MOLECULAR CHARACTERIZATION OF QUIRKY 83
4.2.1 QKY, A NOVEL MCTP INVOLVED IN SUB SIGNALING 83
4.2.2 QKY IS A PD ASSOCIATED PROTEIN 84
4.2.3 QKY MIGHT BE INVOLVED IN CALCIUM MEDIATED VESICLE TRAFFICKING 85
4.2.4 THE PD LOCALIZED QKY MIGHT BE INVOLVED IN THE CALLOSE REGULATION
86
4.3 THE ROLE O F QKY IN SUB MEDIATED INTER-CELLULAR SIGNALING 89
4.3.1 THE MECHANISM OF SUB-QKY INTERACTION 89
VIII
IMAGE 4
TABLE O F CONTENTS
4.3.2 SUB-QKY COMPLEX MIGHT BE INVOLVED IN THE SELECTIVE TRAFFICKING OF
COMPONENTS 90
4.3.3 SUB MEDIATED SIGNALING MAY HAVE A ROLE TO PLAY DURING CELL PLATE
FORMATION 92
4.3.4 DOES SUB/QKY REGULATE CYTOKINESIS OR PLASMODESMATA OR BOTH 93
5 CONCLUSION .. 95
6 SUPPLEMENT 97
7 REFERENCES 106
8 ACKNOWLEDGEMENTS 130
9 CURRICULUM VITAE 131
IX
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| author | Vaddepalli, Ponduranga Vara Prasad |
| author_facet | Vaddepalli, Ponduranga Vara Prasad |
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| author_sort | Vaddepalli, Ponduranga Vara Prasad |
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| spelling | Vaddepalli, Ponduranga Vara Prasad Verfasser aut The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG Ponduranga Vara Prasad Vaddepalli 2012 IX, 131 Bl. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Zsfassung in dt. Sprache München, Techn. Univ., Diss., 2012 Organogenese (DE-588)4266352-0 gnd rswk-swf Ackerschmalwand (DE-588)4141299-0 gnd rswk-swf Kinasen (DE-588)4268693-3 gnd rswk-swf (DE-588)4113937-9 Hochschulschrift gnd-content Ackerschmalwand (DE-588)4141299-0 s Kinasen (DE-588)4268693-3 s Organogenese (DE-588)4266352-0 s b DE-604 Erscheint auch als Online-Ausgabe urn:nbn:de:bvb:91-diss-20121025-1109993-0-3 http://mediatum.ub.tum.de/node?id=1109993 Verlag kostenfrei Volltext https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20121025-1109993-0-3 Resolving-System DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025688192&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Vaddepalli, Ponduranga Vara Prasad The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG Organogenese (DE-588)4266352-0 gnd Ackerschmalwand (DE-588)4141299-0 gnd Kinasen (DE-588)4268693-3 gnd |
| subject_GND | (DE-588)4266352-0 (DE-588)4141299-0 (DE-588)4268693-3 (DE-588)4113937-9 |
| title | The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG |
| title_auth | The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG |
| title_exact_search | The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG |
| title_full | The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG Ponduranga Vara Prasad Vaddepalli |
| title_fullStr | The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG Ponduranga Vara Prasad Vaddepalli |
| title_full_unstemmed | The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG Ponduranga Vara Prasad Vaddepalli |
| title_short | The role of QUIRKY in inter-cellular signaling mediated by the Arabidopsis receptor-like kinase STRUBBELIG |
| title_sort | the role of quirky in inter cellular signaling mediated by the arabidopsis receptor like kinase strubbelig |
| topic | Organogenese (DE-588)4266352-0 gnd Ackerschmalwand (DE-588)4141299-0 gnd Kinasen (DE-588)4268693-3 gnd |
| topic_facet | Organogenese Ackerschmalwand Kinasen Hochschulschrift |
| url | http://mediatum.ub.tum.de/node?id=1109993 https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20121025-1109993-0-3 http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025688192&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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