Conservation and the genetics of populations:
Gespeichert in:
| Hauptverfasser: | , , |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Oxford [u.a.]
Wiley-Blackwell
2013
|
| Ausgabe: | 2. ed. |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | Includes bibliographical references and index |
| Beschreibung: | X, 602 S. Ill., graph. Darst. |
| ISBN: | 9780470671467 9780470671450 |
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| 100 | 1 | |a Allendorf, Frederick William |e Verfasser |4 aut | |
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Datensatz im Suchindex
| _version_ | 1804149781819293696 |
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| adam_text | CONSERVATION AND
THE GENETICS OF
POPULATIONS
Second Edition
Fred W Allendorf
Division of Biological Sciences, University of Montana, Missoula,
MT 59812, USA
Gordon Luikart
Flathead Lake Biological Station, University of Montana, Poison,
MT 59860, USA
Sally N Aitken
Department of Forest Sciences, University of British Columbia,
Vancouver, British Columbia, Canada V6T 1Z4
With illustrations by Agostinho Antunes
©WILEY-BLACKWELL
A John Wiley amp; Sons, Ltd , Publication
Contents
Guest Box authors, ix
Preface to the second edition, xi
Preface to the first edition, xiii
List of symbols, xv
PART I: INTRODUCTION, 1
1 Introduction, 3
1 1 Genetics and civilization, 4
1 2 What should we conserve? 5
1 3 How should we conserve biodiversity?, 9
1 4 Applications of genetics to conservation 10
1 5 The future 12
Guest Box 1: L Scott Mills and Michael E Soule, The
role of genetics in conservation, 13
2 Phenotypic variation in natural
populations, 14
2 1 Color pattern, 17
2 2 Morphology 20
2 3 Behavior, 23
2 4 Phenology, 25
2 5 Differences among populations, 27
2 6 Nongenetic inheritance 31
Guest Box 2: Chris J Foote, Looks can be deceiving:
countergradient variation in secondary
sexual color in sympatric morphs of sockeye
salmon, 32
3 Genetic variation in natural populations:
chromosomes and proteins, 34
3 1 Chromosomes, 35
3 2 Protein electrophoresis 45
3 3 Genetic variation within natural
populations, 48
3 4 Genetic divergence among populations, 50
Guest Box 3: E M Tuttle, Chromosomal
polymorphism in the white-throated
sparrow 52
4 Genetic variation in natural populations:
DNA, 54
4 1 Mitochondrial and chloroplast organelle
DMA 56
4 2 Single-copy nuclear loci, 60
4 3 Multiple locus techniques, 68
4 4 Genomic tools and markers, 69
4 5 Transcriptomics 72
4 6 Other omics and the future 73
Guest Box 4: Louis Bernatchez, Rapid evolutionary
changes of gene expression in domesticated
Atlantic salmon and its consequences for the
conservation of wild populations, 74
PART II: MECHANISMS OF EVOLUTIONARY
CHANGE, 77
5 Random mating populations: Hardy-
Weinberg principle, 79
5 1 Hardy-Weinberg principle, 80
52H ardy-Weinberg proportions, 8 2
5 3 Testing for Hardy-Weinberg proportions, 83
5 4 Estimation of allele frequencies, 88
5 5 Sex-linked loci, 90
5 6 Estimation of genetic variation, 92
Guest Box 5: Paul Sunnucks and Birgita D Hansen,
Null alleles and Bonferroni abuse : treasure
your exceptions (and so get it right for
Leadbeater s possum), 93
vi Contents
6 Small populations and genetic drift, 96
6 1 Genetic drift, 97
6 2 Changes in allele frequency, 100
6 3 Loss of genetic variation: the inbreeding effect
of small populations, 101
6 4 Loss of allelic diversity, 102
6 5 Founder effect, 106
6 6 Genotypic proportions in small
populations, 110
6 7 Fitness effects of genetic drift, 112
Guest Box 6: Menna E Jones Reduced genetic
variation and the emergence of an
extinction-threatening disease in the
Tasmanian devil, 115
7 Effective population size, 117
7 1 Concept of effective population size, 118
7 2 Unequal sex ratio, 119
7 3 Nonrandom number of progeny, 121
7 4 Fluctuating population size, 125
7 5 Overlapping generations, 125
7 6 Variance effective population size, 126
7 7 Cytoplasmic genes, 126
7 8 Gene genealogies, the coalescent, and lineage
sorting, 129
7 9 Limitations of effective population size, 130
7 10 Effective population size in natural
populations, 132
Guest Box 7: Craig R Miller and Lisette P Waits
Estimation of effective population size in
Yellowstone grizzly bears, 134
8 Natural selection, 136
8 1 Fitness, 138
8 2 Single locus with two alleles, 138
8 3 Multiple alleles, 144
8 4 Frequency-dependent selection, 147
8 5 Natural selection in small populations, 149
8 6 Natural selection and conservation, 151
Guest Box 8: Paul A Hohenlohe and William A
Cresko, Natural selection across the genome of
the threespine stickleback fish, 154
9 Population subdivision, 156
9 1 F-Statistics, 158
9 2 Spatial patterns of relatedness within local
populations, 161
9 3 Genetic divergence among populations and
gene flow, 163
9 4 Gene flow and genetic drift, 165
9 5 Continuously distributed populations, 168
9 6 Cytoplasmic genes and sex-linked
markers, 169
9 7 Gene flow and natural selection, 172
9 8 Limitations of FST and other measures of
subdivision, 174
9 9 Estimation of gene flow, 1 79
9 10 Population subdivision and conservation, 184
Guest Box 9: M K Schwartz and | M Tucker, Genetic
population structure and conservation of
fisher in western North America, 185
10 Multiple loci, 187
10 1 Gametic disequilibrium, 188
10 2 Small population size, 192
10 3 Natural selection, 192
10 4 Population subdivision, ] 96
10 5 Hybridization, 196
10 6 Estimation of gametic disequilibrium, 199
10 7 Multiple loci and conservation, 200
Guest Box 10: Robin S Waples, Estimation of
effective population size using gametic
disequilibrium, 203
11 Quantitative genetics, 205
11 1 Heritability, 206
]12 Selection on quantitative traits, 212
11 3 Finding genes underlying quantitative
traits, 217
]14 Loss of quantitative genetic variation, 220
LI 5 Divergence among populations 223
11 6 Quantitative genetics and conservation, 225
Guest Box 11: David W Coltman, Response to trophy
hunting in bighorn sheep, 229
12 Mutation, 230
12 1 Process of mutation, 23]
12 2 Selectively neutral mutations, 235
12 3 Harmful mutations, 239
124 Advantageous mutations 239
12 5 Recovery from a bottleneck, 241
Guest Box 12: Michael W Nachman, Color evolution
via different mutations in pocket mice 242
PART III: GENETICS AND
CONSERVATION, 245
13 Inbreeding depression, 247
13 1 Pedigree analysis 248
13 2 Gene drop analysis, 252
Contents vii
13 3 Estimation of F with molecular
markers, 253
13 4 Causes of inbreeding depression, 256
13 5 Measurement of inbreeding depression 258
13 6 Genetic load and purging, 264
13 7 Inbreeding and conservation, 267
Guest Box 13: Lukas F Keller, Inbreeding depression
in song sparrows 268
14 Demography and extinction, 270
14 1 Estimation of census population Size, 272
14 2 Inbreeding depression and extinction, 274
14 3 Population viability analysis, 277
14 4 Loss of phenotypic variation, 286
14 5 Loss of evolutionary potential 288
14 6 Mitochondrial DNA, 289
14 7 Mutational meltdown 289
14 8 Long-term persistence, 291
14 9 The 50/500 rule 292
Guest Box 14: A G Young, M Pickup,
and B G Murray, Management implications
of loss of genetic diversity at the self-
incompatibility locus for the button
wrinklewort, 293
15 Metapopuiations and fragmentation, 296
15 1 The metapopulation concept, 297
15 2 Genetic variation in metapopuiations, 298
15 3 Effective population size of
metapopuiations, 301
15 4 Population divergence and connectivity, 303
15 5 Genetic rescue, 304
15 6 Landscape genetics, 306
15 7 Long-term population viability, 3L1
Guest Box 15: Robert C Vrijenhoek, Fitness loss and
genetic rescue in stream-dwelling
topminnows, 313
16 Units of conservation, 316
16 1 What should we protect?, 318
16 2 Systematics and taxonomy 320
16 3 Phylogeny reconstruction 322
16 4 Genetic relationships within species 327
16 5 Units of conservation 336
16 6 Integrating genetic, phenotypic, and
environmental information, 346
16 7 Communities 348
Guest Box 16: David J Coates Identifying units of
conservation in a rich and fragmented flora,
17 Hybridization, 352
17 1 Natural hybridization, 353
172 Anthropogenic hybridization 358
17 3 Fitness consequences of hybridization, 360
174 Detecting and describing hybridization, 364
17 5 Hybridization and conservation, 370
Guest Box 1 7: Loren H Rieseberg Hybridization and
the conservation of plants, 375
18 Exploited populations, 377
18 1 Loss of genetic variation, 378
18 2 Unnatural selection, 381
18 3 Spatial structure 385
18 4 Effects of releases, 388
18 5 Management and recovery of exploited
populations, 391
Guest Box 18: GuSrun Marteinsdottir,
Long-term genetic changes in the Icelandic
stock of Atlantic cod in response to
harvesting 393
19 Conservation breeding and
restoration, 395
19,1 The role of conservation breeding, 398
19 2 Reproductive technologies and genome
banking 400
19 3 Founding populations for conservation
breeding programs 403
19 4 Genetic drift in captive populations, 405
19 5 Natural selection and adaptation to
captivity, 407
19 6 Genetic management of conservation breeding
programs, 410
19 7 Supportive breeding, 412
19 8 Reintroductions and translocations, 414
Guest Box 19: Robert C Lacy, Understanding
inbreeding depression: 25 years of
experiments with Peromyscus mice, 419
20 Invasive species, 421
20 1 Why are invasive species so successful? 422
20 2 Genetic analysis of introduced species, 425
20 3 Establishment and spread of invasive
species, 429
20 4 Hybridization as a stimulus for
invasiveness 430
20 5 Eradication, management, and control, 431
20 6 Emerging diseases and parasites, 433
Guest Box 20: Richard Shine, Rapid evolution of
introduced cane toads and native snakes 438
viii Contents
21 Climate change, 440
21 1 Predictions and uncertainty about future
climates 441
21 2 Phenotypic plasticity, 442
21 3 Maternal effects and epigenetics, 445
21 4 Adaptation, 446
21 5 Species range shifts, 448
21 6 Extirpation and extinction, 449
21 7 Management in the face of climate
change, 451
Guest Box 21: S J Franks, Rapid evolution of
flowering time by an annual plant in response
to climate fluctuation 453
22 Genetic identification and
monitoring, 455
22 1 Species identification 457
22 2 Metagenomics and species composition 464
22 3 Individual identification 465
22 4 Parentage and relatedness 469
22 5 Population assignment and composition
analysis 471
22 6 Genetic monitoring, 477
Guest Box 22: C Scott Baker, Genetic detection of
illegal trade of whale meat results in closure
of restaurants, 481
Appendix: Probability and statistics, 484
A1 Paradigms, 485
A2 Probability, 487
A3 Statistical measures and distributions, 489
A4 Frequentist hypothesis testing, statistical
errors, and power 496
A5 Maximum likelihood 499
A6 Bayesian approaches and MCMC (Markov
Chain Monte Carlo), 500
A7 Approximate Bayesian Computation
(ABC) 504
A8 Parameter estimation, accuracy, and
precision, 504
A9 Performance testing, 506
A 10 The coalescent and genealogical
Information, 506
Guest Box A: James F Crow Is mathematics
necessary?, 511
Glossary, 513
References 531
Index, 587
Color plates section between page 302 and page 303
Companion website
This book has a companion website at:
www wiley com/go/allendorf/populations
with additional resources
|
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| id | DE-604.BV040659405 |
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| indexdate | 2024-07-10T00:28:29Z |
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| language | English |
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| spelling | Allendorf, Frederick William Verfasser aut Conservation and the genetics of populations Fred W. Allendorf ; Gordon Luikart ; Sally N. Aitken 2. ed. Oxford [u.a.] Wiley-Blackwell 2013 X, 602 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Includes bibliographical references and index Biodiversität (DE-588)4601495-0 gnd rswk-swf Populationsgenetik (DE-588)4046804-5 gnd rswk-swf Tiere (DE-588)4060087-7 gnd rswk-swf Artenschutz (DE-588)4112598-8 gnd rswk-swf Tiere (DE-588)4060087-7 s Populationsgenetik (DE-588)4046804-5 s Biodiversität (DE-588)4601495-0 s 1\p DE-604 Artenschutz (DE-588)4112598-8 s 2\p DE-604 Luikart, Gordon Verfasser aut Aitken, Sally N. Verfasser aut HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025486192&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis 1\p cgwrk 20201028 DE-101 https://d-nb.info/provenance/plan#cgwrk 2\p cgwrk 20201028 DE-101 https://d-nb.info/provenance/plan#cgwrk |
| spellingShingle | Allendorf, Frederick William Luikart, Gordon Aitken, Sally N. Conservation and the genetics of populations Biodiversität (DE-588)4601495-0 gnd Populationsgenetik (DE-588)4046804-5 gnd Tiere (DE-588)4060087-7 gnd Artenschutz (DE-588)4112598-8 gnd |
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| title | Conservation and the genetics of populations |
| title_auth | Conservation and the genetics of populations |
| title_exact_search | Conservation and the genetics of populations |
| title_full | Conservation and the genetics of populations Fred W. Allendorf ; Gordon Luikart ; Sally N. Aitken |
| title_fullStr | Conservation and the genetics of populations Fred W. Allendorf ; Gordon Luikart ; Sally N. Aitken |
| title_full_unstemmed | Conservation and the genetics of populations Fred W. Allendorf ; Gordon Luikart ; Sally N. Aitken |
| title_short | Conservation and the genetics of populations |
| title_sort | conservation and the genetics of populations |
| topic | Biodiversität (DE-588)4601495-0 gnd Populationsgenetik (DE-588)4046804-5 gnd Tiere (DE-588)4060087-7 gnd Artenschutz (DE-588)4112598-8 gnd |
| topic_facet | Biodiversität Populationsgenetik Tiere Artenschutz |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025486192&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT allendorffrederickwilliam conservationandthegeneticsofpopulations AT luikartgordon conservationandthegeneticsofpopulations AT aitkensallyn conservationandthegeneticsofpopulations |