Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation:
Gespeichert in:
| 1. Verfasser: | |
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| Format: | Abschlussarbeit Buch |
| Sprache: | English |
| Veröffentlicht: |
2012
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| Schlagworte: | |
| Online-Zugang: | Volltext https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20120801-1096741-1-7 Inhaltsverzeichnis |
| Beschreibung: | 125 S. graph. Darst. |
Internformat
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| 100 | 1 | |a Wang, Xi |e Verfasser |0 (DE-588)140294511 |4 aut | |
| 245 | 1 | 0 | |a Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation |c Xi Wang |
| 264 | 1 | |c 2012 | |
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| 502 | |a München, Techn. Univ., Diss., 2012 | ||
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Datensatz im Suchindex
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IMAGE 1
CONTENT
1. INTRODUCTION 1.1 TRANSCRIPTIONAL REGULATION: TRANSCRIPTION FACTOR AND
PROMOTER ARCHITECTURE 1.2 CIS-REGULATORY ELEMENT: REPRESENTATION AND
DETECTION
1.2.1 REPRESENTING CIS-REGULATORY ELEMENTS 1.2.2 DISCOVERY
CIS-REGULATORY ELEMENTS 1.2.2.1 EXPERIMENTAL APPROACHES 1.2.2.2
COMPUTATIONAL APPROACHES
1.2.2.2.1 DETECTION OF KNOWN SITES 1.2.2.2.2 DETECTION OF UNKNOWN SITES
1.3 EVOLUTION OF CIS-REGULATORY ELEMENT 1.4 GOALS OF THIS WORK
2. RESULTS 2.1 DETECTION AND EVALUATION OF CIS-REGULATORY ELEMENTS IN
HIGHER PLANTS 2.1.1 CIS-REGULATORY ELEMENT DETECTION IN RICE AND SORGHUM
BY COMBINATION OF CO-EXPRESSION AND EVOLUTIONARY CONSERVATION
2.1.1.1 PREPARATION O F GENOMIC SEQUENCE DATASETS 2.1.1.2 RICE
EXPRESSION DATA PROCESSING 2.1.1.3 DETERMINATINO OF CO-EXPRESSED GROUPS
2.1.1.4 PHYLOCON MOTIF DISCOVERY AND ANALYSIS
2.1.1.5 VALIDATION O F PHYLOCON DETECTED MOTIFS 2.1.2 CIS-REGULATORY
ELEMENT DETECTION IN RICE AND SORGHUM BY "GLOBAL" EVOLUTIONARY
CONSERVATION 2.1.2.1 MOTIF DETECTION BY NETWORK-LEVEL CONSERVATION:
IMPLEMENTATION
2.1.2.2 DETECTION OF DYADIC MOTIFS 2.1.2.3 VALIDATION OF DETECTED MOTIFS
2.1.3 CIS-REGULATORY ELEMENT DETECTION IN ARABIDOPSIS THALIANA BY
"MUTUAL" INFORMATION AMONG CO-EXPRESSED GENE GROUPS
2.1.3.1 "MUTUAL" INFORMATION AND ITS APPLICATION FOR CIS-ELEMENT
DETECTION BY FIRE 2.1.3.2 CIS-REGULATORY ELEMENT DETECTION IN
ARABIDOPSIS THALIANA USING FIRE 2.1.3.3 VALUDATAION OF DETECTED MOTIFS
2.1.3.4 EVOLUTIONARY CONSERVATION OF FUNCTIONAL CANDIDATE MOTIFS
DETECTED BY FIRE
2.2 EVOLUTIONARY ANALYSIS OF CIS-REGULATORY ELEMENTS IN PLANTS 2.2.1
EVOLUTION O F CIS-REGULATORY ELEMENTS DURING DUPLICATION AND SPECIATION
OF A THALIANA AND A. LYRATA 2.2.1.1 IDENTIFICATION OF ORTHOLOGOUS AND
PARALOGOUS GENES IN A. THALIANA
AND A LYRATA
2
HTTP://D-NB.INFO/1032009136
IMAGE 2
2.2.1.2 CIS-ELEMENT CONSERVATION DURING SPECIATION AND GENE DUPLICATION
2.2.1.3 EVOLUTION O F CIS-ELEMENTS IN COMPLEX PARALOG-ORTHOLOG GENE
NETWORKS 2.2.1.4 SUMMARY 2.2.2 IDENTIFICATION OF GENETIC DETERMINANTS
FOR GENOME-PLASTOME
INCOMPATIBILITY OF OENOTHERA 2.2.2.1 COMPARTMENTALIZED GENETIC SYSTEM
AND CO-EVOLUTION OF INTRACELLULAR GENETIC COMPARTMENTS 2.2.2.2 OENOTHERA
AND ITS DIVERSE GENOME-PLASTOME COMPATIBILITIES 2.2.2.3 SEARCH FOR
PUTATIVE GENETIC DETERMINANTS RESPONSIBLE FOR PGI IN
OENOTHERA
2.2.2.4 CLPP-PSBB INTERGENIC REGION IS AN AB-I INCOMPATIBILITY
DETERMINANT 2.2.2.5 SUMMARY
3 DISCUSSION 3.1 DISCOVERY OF CIS-REGULATORY ELEMENTS IN HIGHER PLANTS
3.1.1 MOTIVATION AND APPROACHES 3.1.2 DETECTED CIS-REGULATORY MOTIFS AND
SITES
3.1.3 EVALUATION O F DETECTED CIS-REGULATORY ELEMENTS 3.1.4 SUMMARY AND
FUTURE WORK 3.2 EVOLUTIONARY ANALYSIS OF CIS-REGULATORY ELEMENTS IN
HIGHER PLANTS 3.2.1 EVOLUTION OF CIS-REGULATORY ELEMENTS IN A. THALIANA
AND A. LYRATA
3.2.2 SEARCH FOR GENETIC DETERMINANTS CAUSAL TO PGIS IN OENOTHERA
4 SUMMARY & OUTLOOK
5 MATERIAL AND METHODS 5.1 ARRAY LISTS INCLUDED IN EACH DATA SET 5.2
MAPPING PROBES OF EXPRESSION DATA TO CURRENT ANNOTATION IN PHLOCON
ANALYSIS 5.3 EXPRESSION DATA PROCESSING AND FILTERING IN PHYLOCON
ANALYSIS 5.4 DETERMINATION O F CO-EXPRESSION GENE GROUPS IN PHYLOCON
ANALYSIS
5.5 PHYLOCON MOTIF DISCOVERY AND ANALYSIS 5.6 VALIDATION O F PHYLOCON
MOTIFS 5.7 MOTIF DETECTION IN RICE AND SORGHUM BY NETWORK-LEVEL
CONSERVATION
5.8 DYADIC MOTIF DETECTION BY NETWORK-LEVEL CONSERVATION 5.9 MOTIF
DETECTION BY FIRE ANALYSIS 5.10 MOTIF DETECTION BETWEEN A. LYRATA AND A.
THALIANA BY NETWORK-LEVEL CONSERVATION
5.11 DETERMINATION OF TANDEM AND SEGMENTAL DUPLICATION IN A. THALIANA
AND A. LYRATA 5.12 DETERMINATION OF COMPLETE PARALOG-ORTHOLOG GENE
NETWORKS 5.13 THE FLOWING PLANT GENUS OENOTHERA SUBSECTION (
EU)OENOTHERA
3
IMAGE 3
6 REFERENCE
7 APPENDIXES 8 PUBLICATIONS 9 ACKNOWLEDGMENTS |
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| discipline | Biologie |
| format | Thesis Book |
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| spelling | Wang, Xi Verfasser (DE-588)140294511 aut Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation Xi Wang 2012 125 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier München, Techn. Univ., Diss., 2012 Kormophyten (DE-588)4165315-4 gnd rswk-swf Phylogenetik (DE-588)4174591-7 gnd rswk-swf Transkription Genetik (DE-588)4185906-6 gnd rswk-swf (DE-588)4113937-9 Hochschulschrift gnd-content Kormophyten (DE-588)4165315-4 s Transkription Genetik (DE-588)4185906-6 s Phylogenetik (DE-588)4174591-7 s b DE-604 Erscheint auch als Online-Ausgabe urn:nbn:de:bvb:91-diss-20120801-1096741-1-7 http://mediatum.ub.tum.de/node?id=1096741 Verlag kostenfrei Volltext https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20120801-1096741-1-7 Resolving-System DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025399991&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Wang, Xi Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation Kormophyten (DE-588)4165315-4 gnd Phylogenetik (DE-588)4174591-7 gnd Transkription Genetik (DE-588)4185906-6 gnd |
| subject_GND | (DE-588)4165315-4 (DE-588)4174591-7 (DE-588)4185906-6 (DE-588)4113937-9 |
| title | Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation |
| title_auth | Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation |
| title_exact_search | Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation |
| title_full | Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation Xi Wang |
| title_fullStr | Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation Xi Wang |
| title_full_unstemmed | Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation Xi Wang |
| title_short | Detection and evolutionary analysis of functional conserved non-coding sequences in higher plants by integrating evolutionary and functional conservation |
| title_sort | detection and evolutionary analysis of functional conserved non coding sequences in higher plants by integrating evolutionary and functional conservation |
| topic | Kormophyten (DE-588)4165315-4 gnd Phylogenetik (DE-588)4174591-7 gnd Transkription Genetik (DE-588)4185906-6 gnd |
| topic_facet | Kormophyten Phylogenetik Transkription Genetik Hochschulschrift |
| url | http://mediatum.ub.tum.de/node?id=1096741 https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20120801-1096741-1-7 http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025399991&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT wangxi detectionandevolutionaryanalysisoffunctionalconservednoncodingsequencesinhigherplantsbyintegratingevolutionaryandfunctionalconservation |