Genome mapping and genomics in fishes and aquatic animals:
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Berlin [u.a.]
Springer
2008
|
| Schriftenreihe: | Genome mapping and genomics in animals
2 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XXIII, 180 S. Ill., graph. Darst. 27 cm |
| ISBN: | 9783540738367 |
Internformat
MARC
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| 245 | 1 | 0 | |a Genome mapping and genomics in fishes and aquatic animals |c Thomas D. Kocher ... (Eds.) |
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Datensatz im Suchindex
| _version_ | 1804149516941656064 |
|---|---|
| adam_text | Contents
Contributors....................................................... XVII
Abbreviations...................................................... XXI
1 Salmonids
C. Araneda, R. Neira, N. Lam, P. Iturra ................................. 1
1.1 Introduction................................................... 1
1.2 History of Salmon Culture....................................... 1
1.2.1 Early History of Salmon Culture .......................... 1
1.2.2 From 1890 to 1975....................................... 2
1.2.3 From 1975 to the Present Time............................ 2
1.3 Taxonomic Status and Distribution............................... 2
1.3.1 Genus Salmo........................................... 4
1.3.2 Genus Oncorhynchus.................................... 4
1.3.3 Genus Salvelinus........................................ 6
1.3.4 Genus Coregonus........................................ 6
1.3.5 Genus Hucho........................................... 6
1.4 Genetic Improvement........................................... 6
1.4.1 Genetic Improvement Programs in Salmon Aquaculture..... 7
1.5 Genetic Mapping in Salmonids................................... 7
1.5.1 First Generation Map.................................... 9
1.5.2 Second Generation Map.................................. 18
1.5.3 Mapping Consequences of Ancestral Tetraploidy
of Salmonids........................................... 19
1.6 Detection of Quantitative Trait Loci............................... 20
1.6.1 Upper Temperature Tolerance ............................ 20
1.6.2 Spawning Date.......................................... 22
1.6.3 Embryonic Development Rate............................ 23
1.6.4 Morphological and Meristic Traits......................... 24
1.6.5 Resistance to Disease and Immunologie Traits.............. 26
1.7 Association of Traits with Specific Molecular Markers............... 29
1.7.1 Bulked Segregant Analysis ............................... 29
1.7.2 Selective Genotyping.................................... 31
1.7.3 Other Single Locus Markers.............................. 31
1.8 Physical Mapping.............................................. 32
1.8.1 Karyotypes............................................. 32
1.8.2 Physical Mapping of Centromerk Repeats.................. 33
1.8.3 Physical Mapping of Telomeric Repeated Sequences......... 34
1.8.4 Physical Mapping of Multicopy Genes: Ribosomal Genes..... 34
1.8.5 Physical Mapping of Coding Genes........................ 35
1.8.6 Physical Mapping of Sex Markers ......................... 36
1.9 Integration of Genetic and Cytogenetic Maps...................... 37
References.......................................................... 37
XII Contents_________________________________________________________
2 Cyprinids
L. Orban, Q. Wu..................................................... 45
2.1 Introduction................................................... 45
2.2 The Biology and History of Farmed Cyprinids..................... 45
2.2.1 The Taxonomy and Physiology of Farmed Cyprinids......... 45
2.2.2 Classical Studies on the Taxonomy and Origin
of Farmed Cyprinids .................................... 46
2.2.3 The History of Cyprinid Aquaculture...................... 47
2.3 Classical Genetics.............................................. 49
2.3.1 Phenotypic Markers..................................... 49
2.3.2 Biochemical Markers.................................... 49
2.4 Cyprinid Chromosome Sets and Their Manipulation................ 50
2.4.1 Chromosome Sets....................................... 50
2.4.2 Gynogenesis............................................ 51
2.4.3 Androgenesis........................................... 52
2.4.4 Induced Triploidy....................................... 53
2.4.5 Induced Tetraploidy..................................... 54
2.4.6 Nuclear Transfer........................................ 56
2.5 Genetic and Genomic Resources for Cyprinid Research............. 56
2.5.1 DNA Markers and Their Applications...................... 56
2.5.2 Genetic Maps, Map-Based Cloning, and QTLs.............. 61
2.5.3 Libraries, cDNAs and Proteins............................ 63
2.5.4 The Zebrafish Genome Project............................ 64
2.5.5 cDNA Arrays and Oligonucleotide Chips................... 64
2.5.6 Induced Mutants and Transgenic lines..................... 66
2.6 Speculation on Sequencing the Genome
of a Farmed Cyprinid Species.................................... 66
2.7 The Urgent Need for Comparative Cyprinid Genomics.............. 68
2.7.1 Genome Maps Need to Be Established in Farmed Cyprinids .. 68
2.7.2 More Genomic and cDNA Libraries Are Needed............. 69
2.7.3 Comparative Transcriptomics of Cyprinids - A Treasure
Trove Waiting to Be Opened.............................. 69
2.7.4 A Call for Cross-compatible Cyprinid and Teleost Databases.. 70
2.8 Synopsis...................................................... 70
References.......................................................... 71
3 Catfish
Z. Liu.............................................................. 85
3.1 Introduction................................................... 85
3.2 Construction of Genetic Maps................................... 87
3.2.1 Development and Evaluation of Molecular Markers.......... 88
3.2.2 Development of Type I Markers........................... 88
3.2.3 Resource Families and Linkage Maps...................... 89
3.2.4 A Summary of the Linkage Map........................... 90
3.3 QTL Mapping and Identification of Candidate Genes................ 90
3.4 Landscape of the Catfish Genome................................ 90
3.5 BAC Libraries and Physical Mapping.............................. 92
3.6 EST Analysis and Transcriptome Analysis......................... 93
3.7 Systematic Characterization of Genes and/or Full-Length cDNAs..... 95
_______________________________________________________________Contents XIII
3.8 Future Perspectives............................................. 96
References.......................................................... 97
4 Tilapias
A. Cnaani, G. Hulata................................................. 101
4.1 Introduction................................................... 101
4.1.1 Brief History: Center of Origin, Domestication,
Dissemination.......................................... 101
4.1.2 Zoological Descriptions.................................. 101
4.1.3 Economic Importance................................... 103
4.1.4 Breeding Objectives and Classical Breeding Achievements___ 103
4.1.5 Classical Marker Development and Application............. 104
4.1.6 Development of DNA Markers............................ 104
4.1.7 Limitations of Conventional Genetics and Breeding
Approaches and the Utility of Molecular Mapping........... 105
4.2 Genetic Mapping in Tilapia...................................... 105
4.2.1 First-Generation Maps................................... 105
4.2.2 Second-Generation Map................................. 105
4.2.3 Physical Mapping....................................... 108
4.3 Gene Mapping................................................. 108
4.4 QTL in Tilapias................................................ 109
4.4.1 Detection of QTL........................................ 109
4.4.2 Gene-Trait Association.................................. 112
4.5 Future Scope and Related Tilapia Genomic Research................ 112
References.......................................................... 112
5 European Sea Bass
F.A.M. Volckaert, C. Batargias, A. Canario, D. Chatziplis, D. Chistiakov,
C. Haley, A. Iibertini, C. Tsigenopoulos ................................ 117
5.1 Introduction................................................... 117
5.1.1 History................................................ 117
5.1.2 Zoological Descriptions.................................. 118
5.1.3 Economic Importance................................... 120
5.1.4 Biodiversity and Strain Evaluation ........................ 120
5.1.5 Strain Testing, Breeding Objectives, and Classical Breeding... 122
5.2 Construction of Genetic Maps................................... 123
5.3 Gene Mapping................................................. 124
5.4 Studies on Quantitative Trait Loci (QTL).......................... 125
5.4.1 Target Traits............................................ 125
5.4.2 Genome Scan........................................... 127
5.4.3 QTLs Detected.......................................... 128
5.5 Marker-Assisted Breeding....................................... 128
5.6 Advanced Research............................................. 129
References.......................................................... 130
6 Japanese Flounder
C. Castano, K. Kobayashi, M.R.M. Coimbra, K. Fuji, T. Sakamoto, N. Okamoto 135
6.1 Introduction................................................... 135
6.1.1 Economic Importance and Current Status.................. 135
6.1.2 Breeding Objectives and the Utility of Molecular Mapping___ 135
XIV Contents__________________________________________________________
6.2 Molecular Markers............................................. 136
6.2.1 Available Markers....................................... 136
6.2.2 Application of Molecular Markers in Aquaculture
and Population Studies.................................. 136
6.3 Genetic Linkage Maps.......................................... 137
6.3.1 First-Generation Genetic Linkage Map..................... 137
6.3.2 Second-Generation Genetic Linkage Map.................. 137
6.3.3 Marker-Centromere Map................................ 146
6.4 Application of Genetic Linkage Maps and Future Prospects.......... 146
6.4.1 Quantitative Trait Loci Studies............................ 146
6.4.2 Future Prospects........................................ 147
References.......................................................... 147
7 Shrimp
A.K. Dhar, B. Read, R.A. Bullis......................................... 149
7.1 Introduction................................................... 149
7.1.1 Biosecurity, Domestication, and Development
of Specific Pathogen Free Shrimp.......................... 149
7.2 Genetic Markers and Linkage Maps in Shrimp..................... 152
7.2.1 Genetic Markers........................................ 152
7.2.2 Linkage Maps of Shrimp................................. 153
7.3 Efforts in Reverse Genetics...................................... 154
7.3.1 Expressed Sequence Tag (EST) Analysis.................... 155
7.3.2 mRNA Differential Display............................... 156
7.3.3 Microarray Analysis..................................... 157
7.4 Future Perspectives............................................. 159
References.......................................................... 159
8 Oysters
X. Guo, Y. Wang, L. Wang, J.-H. Lee.................................... 163
8.1 Introduction................................................... 163
8.2 The Oyster Genome............................................ 164
8.2.1 Chromosome Number................................... 164
8.2.2 Genetic Length......................................... 164
8.2.3 Genome Size........................................... 164
8.3 Construction of Genetic Maps................................... 165
8.3.1 Brief History........................................... 165
8.3.2 First-Generation Maps................................... 166
8.3.3 Mapping with Codominant Markers....................... 166
8.3.4 Comparative and Cytogenetic Mapping.................... 169
8.4 Gene Mapping................................................. 169
8.5 QTL Mapping and Marker-Assisted Breeding...................... 171
8.5.1 Growth and Shell Characteristics.......................... 171
8.5.2 Disease Resistance...................................... 171
8.5.3 Marker-Assisted Breeding................................ 172
8.6 Advanced Genomic Resources................................... 172
8.6.1 Physical Mapping....................................... 172
8.6.2 ESTs and Microarrays.................................... 172
_________________________________________________________Contents XV
8.6.3 Whole-Genome Sequencing.............................. 173
8.7 Conclusions and Future Prospects................................ 173
References.......................................................... 173
Subject Index 177
|
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| id | DE-604.BV040454596 |
| illustrated | Illustrated |
| indexdate | 2024-07-10T00:24:17Z |
| institution | BVB |
| isbn | 9783540738367 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-025302171 |
| oclc_num | 244068993 |
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| owner | DE-83 |
| owner_facet | DE-83 |
| physical | XXIII, 180 S. Ill., graph. Darst. 27 cm |
| publishDate | 2008 |
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| publishDateSort | 2008 |
| publisher | Springer |
| record_format | marc |
| series | Genome mapping and genomics in animals |
| series2 | Genome mapping and genomics in animals |
| spelling | Genome mapping and genomics in fishes and aquatic animals Thomas D. Kocher ... (Eds.) Berlin [u.a.] Springer 2008 XXIII, 180 S. Ill., graph. Darst. 27 cm txt rdacontent n rdamedia nc rdacarrier Genome mapping and genomics in animals 2 Genkartierung (DE-588)4123274-4 gnd rswk-swf Genanalyse (DE-588)4200230-8 gnd rswk-swf Fische (DE-588)4017269-7 gnd rswk-swf Wassertiere (DE-588)4064802-3 gnd rswk-swf Fische (DE-588)4017269-7 s Genkartierung (DE-588)4123274-4 s Genanalyse (DE-588)4200230-8 s DE-604 Wassertiere (DE-588)4064802-3 s Kocher, Thomas D. edt Erscheint auch als Online-Ausgabe 978-3-540-73837-4 Genome mapping and genomics in animals 2 (DE-604)BV035008756 2 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025302171&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Genome mapping and genomics in fishes and aquatic animals Genome mapping and genomics in animals Genkartierung (DE-588)4123274-4 gnd Genanalyse (DE-588)4200230-8 gnd Fische (DE-588)4017269-7 gnd Wassertiere (DE-588)4064802-3 gnd |
| subject_GND | (DE-588)4123274-4 (DE-588)4200230-8 (DE-588)4017269-7 (DE-588)4064802-3 |
| title | Genome mapping and genomics in fishes and aquatic animals |
| title_auth | Genome mapping and genomics in fishes and aquatic animals |
| title_exact_search | Genome mapping and genomics in fishes and aquatic animals |
| title_full | Genome mapping and genomics in fishes and aquatic animals Thomas D. Kocher ... (Eds.) |
| title_fullStr | Genome mapping and genomics in fishes and aquatic animals Thomas D. Kocher ... (Eds.) |
| title_full_unstemmed | Genome mapping and genomics in fishes and aquatic animals Thomas D. Kocher ... (Eds.) |
| title_short | Genome mapping and genomics in fishes and aquatic animals |
| title_sort | genome mapping and genomics in fishes and aquatic animals |
| topic | Genkartierung (DE-588)4123274-4 gnd Genanalyse (DE-588)4200230-8 gnd Fische (DE-588)4017269-7 gnd Wassertiere (DE-588)4064802-3 gnd |
| topic_facet | Genkartierung Genanalyse Fische Wassertiere |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=025302171&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV035008756 |
| work_keys_str_mv | AT kocherthomasd genomemappingandgenomicsinfishesandaquaticanimals |