Homology modeling: methods and protocols
Saved in:
| Format: | Book |
|---|---|
| Language: | English |
| Published: |
New York [u.a.]
Humana Press
2012
|
| Series: | Methods in molecular biology
857 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Includes bibliographical references and index |
| Physical Description: | XI, 419 Seiten Illustrationen, Diagramme |
| ISBN: | 1617795879 9781617795879 |
Staff View
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| 245 | 1 | 0 | |a Homology modeling |b methods and protocols |c ed. by Andrew J. W. Orry ; Ruben Abagyan |
| 264 | 1 | |a New York [u.a.] |b Humana Press |c 2012 | |
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Record in the Search Index
| DE-BY-862_location | 2000 |
|---|---|
| DE-BY-FWS_call_number | 2000/WD 4150 O75 |
| DE-BY-FWS_katkey | 1051323 |
| DE-BY-FWS_media_number | 083000525551 |
| _version_ | 1824554016056541184 |
| adam_text | Titel: Homology modeling
Autor: Orry, Andrew J. W.
Jahr: 2012
Contents
Preface.......................................................... v
Contributors.......................................................... ix
1 Classification of Proteins: Available Structural Space
for Molecular Modeling......................................... 1
Antonina Andreeva
2 Effective Techniques for Protein Structure Mining..................... 33
Stefan J. Suhrer, Markus Gruber, Markus Wiederstein,
and Manfred J. Sippl
3 Methods for Sequence^Structure Alignment.......................... 55
Ceslovas Venclovas
4 Force Fields for Homology Modeling............................... 83
Andrew J. Bordner
5 Automated Protein Structure Modeling with SWISS-MODEL
Workspace and the Protein Model Portal............................. 107
Lorenza Bordoli and Torsten Schwede
6 A Practical Introduction to Molecular Dynamics Simulations:
Applications to Homology Modeling............................... 137
Alessandra Nurisso, Antoine Daina, and Ross C. Walker
7 Methods for Accurate Homology Modeling by Global Optimization........ 175
Keehyoung Joo, Jinwoo Lee, and Jooyounjj Lee
8 Ligand-Guided Receptor Optimization.............................. 189
Vsevolod Katritch, Manuel Rueda, and Ruben Abagyan
9 Loop Simulations.............................................. 207
Maxim Totrov
10 Methods of Protein Structure Comparison........................... 231
Irina Kufdreva and Ruben Abagyan
11 Homology Modeling of Class A G Protein-Coupled Receptors............ 259
Stefano Costanzi
12 Homology Modeling of Transporter Proteins
(Carriers and Ion Channels)...................................... 281
Aina Westrbeim Ravna and Ingebrijjt Sylte
13 Methods for the Homology Modeling of Antibody Variable Regions........ 301
Aroop Sircar
14 Investigating Protein Variants Using Structural Calculation Techniques...... 313
Jonas Carlsson and Bengt Persson
VII
viii Contents
15 Macromolecular Assembly Structures by Comparative Modeling
and Electron Microscopy........................................ 331
Keren Lasker, Javier A. Velázquez-Muriel, Benjamin M. Webb,
Zheng Tang, Thomas E. Ferrin, and Andrej Sali
16 Preparation and Refinement of Model Protein-Ligand Complexes......... 351
Andrew J. W. Orry and Ruben Abagyan
17 Modeling Peptide-Protein Interactions.............................. 375
Nir London, Barak Raveh, and Ora Schueler-Furman
18 Comparison of Common Homology Modeling Algorithms:
Application of User-Defined Alignments............................. 399
Michael A. Dolan, James W. Noah, and Darrell Hurt
Index........................................................... 415
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| id | DE-604.BV040117369 |
| illustrated | Illustrated |
| indexdate | 2025-02-20T06:45:03Z |
| institution | BVB |
| isbn | 1617795879 9781617795879 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-024973536 |
| oclc_num | 796213991 |
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| physical | XI, 419 Seiten Illustrationen, Diagramme |
| publishDate | 2012 |
| publishDateSearch | 2012 |
| publishDateSort | 2012 |
| publisher | Humana Press |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology Springer protocols |
| spellingShingle | Homology modeling methods and protocols Methods in molecular biology Molekularbiologie (DE-588)4039983-7 gnd Homologie (DE-588)4141951-0 gnd Proteine (DE-588)4076388-2 gnd Tertiärstruktur (DE-588)4276602-3 gnd Methode (DE-588)4038971-6 gnd |
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| title | Homology modeling methods and protocols |
| title_auth | Homology modeling methods and protocols |
| title_exact_search | Homology modeling methods and protocols |
| title_full | Homology modeling methods and protocols ed. by Andrew J. W. Orry ; Ruben Abagyan |
| title_fullStr | Homology modeling methods and protocols ed. by Andrew J. W. Orry ; Ruben Abagyan |
| title_full_unstemmed | Homology modeling methods and protocols ed. by Andrew J. W. Orry ; Ruben Abagyan |
| title_short | Homology modeling |
| title_sort | homology modeling methods and protocols |
| title_sub | methods and protocols |
| topic | Molekularbiologie (DE-588)4039983-7 gnd Homologie (DE-588)4141951-0 gnd Proteine (DE-588)4076388-2 gnd Tertiärstruktur (DE-588)4276602-3 gnd Methode (DE-588)4038971-6 gnd |
| topic_facet | Molekularbiologie Homologie Proteine Tertiärstruktur Methode Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024973536&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV035362695 |
| work_keys_str_mv | AT orryandrewjw homologymodelingmethodsandprotocols AT abagyanruben homologymodelingmethodsandprotocols |
Indexes
THWS Schweinfurt Zentralbibliothek Lesesaal
| Call Number: |
2000 WD 4150 O75 |
|---|---|
| Copy 1 | ausleihbar Available Place a Hold |