Handbook of functional MRI data analysis:
Gespeichert in:
| Hauptverfasser: | , , |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Cambridge
Cambridge University Press
2011
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis Klappentext |
| Beschreibung: | Hier auch später erschienene, unveränderte Nachdrucke |
| Beschreibung: | X, 228 Seiten Illustrationen, Diagramme 26 cm |
| ISBN: | 9780521517669 9781009481168 0521517664 |
Internformat
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Datensatz im Suchindex
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| adam_text | Titel: Handbook of functional MRI data analysis
Autor: Poldrack, Russell A.
Jahr: 2011
Contents
Preface page ix
1 Introduction 1
1.1 A brief overview of fMRI 1
1.2 The emergence of cognitive neuroscience 3
1.3 A brief history of fMRI analysis 4
1.4 Major components of fMRI analysis 7
1.5 Software packages for fMRI analysis 7
1.6 Choosing a software package 10
1.7 Overview of processing streams 10
1.8 Prerequisites for fMRI analysis 10
2 Image processing basics 13
2.1 What is an image? 13
2.2 Coordinate systems 15
2.3 Spatial transformations 17
2.4 Filtering and Fourier analysis 31
3 Preprocessing fMRI data 34
3.1 Introduction 34
3.2 An overview of fMRI preprocessing 34
3.3 Quality control techniques 34
3.4 Distortion correction 38
3.5 Slice timing correction 41
3.6 Motion correction 43
3.7 Spatial smoothing 50
4 Spatial normalization 53
4.1 Introduction 53
4.2 Anatomical variability 53
4.3 Coordinate spaces for neuroimaging 54
vi Contents
4.4 Atlases and templates 55
4.5 Preprocessing of anatomical images 56
4.6 Processing streams for fMRI normalization 58
4.7 Spatial normalization methods 60
4.8 Surface-based methods 62
4.9 Choosing a spatial normalization method 63
4.10 Quality control for spatial normalization 65
4.11 Troubleshooting normalization problems 66
4.12 Normalizing data from special populations 66
5 Statistical modeling: Single subject analysis 70
5.1 The BOLD signal 70
5.2 The BOLD noise 86
5.3 Study design and modeling strategies 92
6 Statistical modeling: Group analysis 100
6.1 The mixed effects model 100
6.2 Mean centering continuous covariates 105
7 Statistical inference on images 110
7.1 Basics of statistical inference 110
7.2 Features of interest in images 112
7.3 The multiple testing problem and solutions 116
7.4 Combining inferences: masking and conjunctions 123
7.5 Use of region of interest masks 126
7.6 Computing statistical power 126
8 Modeling brain connectivity 130
8.1 Introduction 130
8.2 Functional connectivity 131
8.3 Effective connectivity 144
8.4 Network analysis and graph theory 155
9 Multivoxel pattern analysis and machine learning 160
9.1 Introduction to pattern classification 160
9.2 Applying classifiers to fMRI data 163
9.3 Data extraction 163
9.4 Feature selection 164
9.5 Training and testing the classifier 165
9.6 Characterizing the classifier 171
10 Visualizing, localizing, and reporting fMRI data 173
10.1 Visualizing activation data 173
10.2 Localizing activation 176
vii Contents
10.3 Localizing and reporting activation 179
10.4 Region of interest analysis 183
Appendix A Review of the General Linear Model 191
A.1 Estimating GLM parameters 191
A.2 Hypothesis testing 194
A.3 Correlation and heterogeneous variances 195
A.4 Why general linear model? 197
Appendix B Data organization and management 201
B.l Computing for fMRI analysis 201
B.2 Data organization 202
B.3 Project management 204
B.4 Scripting for data analysis 205
Appendix C Image formats 208
C.l Datastorage 208
C.2 Füe formats 209
Bibliography 211
Index 225
|
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| discipline | Informatik Medizintechnik Psychologie Mathematik Medizin |
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| spelling | Poldrack, Russell A. Verfasser (DE-588)1048579018 aut Handbook of functional MRI data analysis Russell A. Poldrack, Jeanette A. Mumford, Thomas E. Nichols Cambridge Cambridge University Press 2011 X, 228 Seiten Illustrationen, Diagramme 26 cm txt rdacontent n rdamedia nc rdacarrier Hier auch später erschienene, unveränderte Nachdrucke Magnetic Resonance Imaging Image Processing, Computer-Assisted methods Brain Mapping Data Interpretation, Statistical Gehirn (DE-588)4019752-9 gnd rswk-swf Kernspintomografie (DE-588)4120806-7 gnd rswk-swf Datenanalyse (DE-588)4123037-1 gnd rswk-swf Gehirn (DE-588)4019752-9 s Kernspintomografie (DE-588)4120806-7 s Datenanalyse (DE-588)4123037-1 s DE-604 Mumford, Jeanette A. 1975- Verfasser (DE-588)1017092192 aut Nichols, Thomas E. Verfasser (DE-588)104857931X aut HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024616974&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis Digitalisierung UB Augsburg - ADAM Catalogue Enrichment application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024616974&sequence=000003&line_number=0002&func_code=DB_RECORDS&service_type=MEDIA Klappentext |
| spellingShingle | Poldrack, Russell A. Mumford, Jeanette A. 1975- Nichols, Thomas E. Handbook of functional MRI data analysis Magnetic Resonance Imaging Image Processing, Computer-Assisted methods Brain Mapping Data Interpretation, Statistical Gehirn (DE-588)4019752-9 gnd Kernspintomografie (DE-588)4120806-7 gnd Datenanalyse (DE-588)4123037-1 gnd |
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| title | Handbook of functional MRI data analysis |
| title_auth | Handbook of functional MRI data analysis |
| title_exact_search | Handbook of functional MRI data analysis |
| title_full | Handbook of functional MRI data analysis Russell A. Poldrack, Jeanette A. Mumford, Thomas E. Nichols |
| title_fullStr | Handbook of functional MRI data analysis Russell A. Poldrack, Jeanette A. Mumford, Thomas E. Nichols |
| title_full_unstemmed | Handbook of functional MRI data analysis Russell A. Poldrack, Jeanette A. Mumford, Thomas E. Nichols |
| title_short | Handbook of functional MRI data analysis |
| title_sort | handbook of functional mri data analysis |
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