Modelling bacterial growth, dispersal and biodegradation: an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants
Gespeichert in:
| 1. Verfasser: | |
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| Format: | Abschlussarbeit Buch |
| Sprache: | English |
| Veröffentlicht: |
Leipzig
Helmholtz Centre for Environmental Research, UFZ
2011
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| Schriftenreihe: | PhD dissertation / Helmholtz Centre for Environmental Research, UFZ
2011,4 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | 111 S. Ill., graph. Darst. |
Internformat
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| 245 | 1 | 0 | |a Modelling bacterial growth, dispersal and biodegradation |b an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants |c by Thomas Banitz |
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Datensatz im Suchindex
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| adam_text | IMAGE 1
CONTENTS
PREFACE 3
B R I E F CONTENTS 5
1 INTRODUCTION 11
1.1 BIODEGRADATION IN SOIL 11
1.1.1 SOIL POLLUTION 11
1.1.2 SOIL REMEDIATION 12
1.1.3 MOBILISATION O F BACTERIA B Y FUNGI 14
1.1.4 A N ECOLOGICAL PERSPECTIVE 14
1.2 RESEARCH OBJECTIVES 15
1.3 T H E CHAPTERS AT A GLANCE 16
1.3.1 SYNOPSIS 16
1.3.2 CHAPTER 2 17
1.3.3 CHAPTER 3 17
1.3.4 CHAPTER 4 17
1.3.5 CHAPTER 5 17
1.3.6 CHAPTER 6 18
1.3.7 CHAPTER 7 18
1.3.8 CHAPTER 8 18
2 LABORATORY EXPERIMENTS 19
2.1 ORGANISM A N D CULTURE CONDITIONS 19
2.2 OBSERVATION DATA 19
2.3 BACTERIAL DISPERSAL NETWORKS 2 0
3 SIMULATION MODEL 23
3.1 OVERVIEW 2 3
3.2 MODEL PROCESSES 2 4
3.2.1 SUBSTRATE UPTAKE 2 4
3.2.2 UPTAKE ALLOCATION 2 4
3.2.3 BACTERIAL DISPERSAL 25
3.2.4 BACTERIAL GROWTH A N D REPRODUCTION 2 6
3.2.5 SUBSTRATE DIFFUSION 2 7
3.2.6 SUMMARY...: 2 8
HTTP://D-NB.INFO/1013862791
IMAGE 2
CONTENTS
3.3 M O D E L INPUTS AND OUTPUTS 2 8
3.4 M O D E L PARAMETERISATION 2 9
3.5 BACTERIAL DISPERSAL NETWORKS 3 1
4 CONDITIONAL BACTERIAL DISPERSAL 33
4.1 CONDITIONAL DISPERSAL 3 3
4.2 METHODS 3 4
4.2.1 BACTERIAL DISPERSAL STRATEGIES 3 4
4.2.2 SELECTED DISPERSAL MODEL CONFIGURATIONS 3 7
4.3 RESULTS 3 7
4.4 DISCUSSION 39 *
4.4.1 T H E NECESSITY TO INCORPORATE CONDITIONAL DISPERSAL 4 0
4.4.2 RELATING CONDITIONAL DISPERSAL TO RESOURCE ALLOCATION 4 2
4.4.3 T H E POTENTIAL O F THE APPROACH PRESENTED 4 2
4.4.4 M A I N CONCLUSION 4 3
5 BIODEGRADATION BENEFITS FROM DISPERSAL NETWORKS 45
5.1 ASSESSING BIODEGRADATION PERFORMANCE IN RESPONSE TO BACTERIAL
DISPERSAL NETWORKS 4 5
5.2 METHODS 4 5
5.3 RESULTS 4 6
5.4 DISCUSSION 1 4 8
6 SPATIALLY HETEROGENEOUS ENVIRONMENTS 51
6.1 CONSIDERING SPATIALLY HETEROGENEOUS ABIOTIC CONDITIONS 51
6.2 METHODS 5 2
6.2.1 SPATIALLY HETEROGENEOUS BACTERIAL DISPERSAL CONDITIONS 53
6.2.2 SPATIALLY HETEROGENEOUS INITIAL RESOURCE DISTRIBUTIONS 5 4
6.3 RESULTS 5 5
6.3.1 SPATIALLY HETEROGENEOUS BACTERIAL DISPERSAL CONDITIONS 55
6.3.2 SPATIALLY HETEROGENEOUS INITIAL RESOURCE DISTRIBUTIONS 5 6
6.4 DISCUSSION 5 8
6.4.1 SIMULATION MODEL 5 8
6.4.2 BIODEGRADATION BENEFITS FROM BACTERIAL DISPERSAL NETWORKS 5 9
6.4.3 INSPECTING THE ATTRIBUTES O F SPATIAL HETEROGENEITIES - RELATIVE
ABUNDANCE 6 0
6.4.4 INSPECTING THE ATTRIBUTES O F SPATIAL HETEROGENEITIES - SPATIAL
AUTOCORRELATION 6 0
6.4.5 HOMOGENEOUS APPROXIMATIONS FOR HETEROGENEOUS CONDITIONS 6 0
IMAGE 3
CONTENTS
7 SPATIAL CONFIGURATION O F DISPERSAL NETWORKS 63
7.1 MULTIPLE COMPLEX SPATIAL CONFIGURATIONS O F BACTERIAL DISPERSAL
NETWORKS 63
7.2 METHODS 63
7.2.1 ABIOTIC CONDITIONS AND DISPERSAL NETWORKS APPLIED 6 3
7.2.2 METRICS O F SPATIAL CONFIGURATION O F DISPERSAL NETWORKS 6 4
7.2.3 METHODOLOGICAL APPROACH 6 6
7.3 RESULTS 6 8
7.3.1 FIRST STEP - SINGLE METRICS 6 8
7.3.2 SECOND STEP - A COMBINATION O F T W O METRICS 6 9
7.4 DISCUSSION 71
8 DISCUSSION AND OUTLOOK 75
8.1 T H E APPROACH DEVELOPED IN THIS THESIS 75
8.1.1 LABORATORY EXPERIMENTS 7 6
8.1.2 SIMULATION M O D E L 7 6
8.1.3 FITTING THE MODEL TO EXPERIMENTS 77
8.1.4 MODEL APPLICATION 7 8
8.2 M A I N RESULTS 7 8
8.2.1 S U M M A R Y O F RESULTS 7 8
8.2.2 POTENTIAL O F FUNGAL NETWORKS FOR ENHANCING BIODEGRADATION IN SOIL
8 0
8.3 OUTLOOK ON FUTURE RESEARCH 81
8.3.1 POSSIBLE STUDIES RELATING TO RESEARCH OBJECTIVES O F THIS THESIS
81
8.3.2 FURTHER STUDIES RELATING TO RESEARCH OBJECTIVES BEYOND THE SCOPE O
F THIS THESIS 83
SYMBOLS 87
FIGURES 91
TABLES 9 7
BIBLIOGRAPHY 99
ACKNOWLEDGEMENTS 111
|
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| spelling | Banitz, Thomas Verfasser aut Modelling bacterial growth, dispersal and biodegradation an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants by Thomas Banitz Leipzig Helmholtz Centre for Environmental Research, UFZ 2011 111 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier PhD dissertation / Helmholtz Centre for Environmental Research, UFZ 2011,4 Zugl.: Osnabrück, Univ., Diss., 2011 Mikrobieller Abbau (DE-588)4039197-8 gnd rswk-swf Biologischer Abbau (DE-588)4145625-7 gnd rswk-swf Organischer Schadstoff (DE-588)4172787-3 gnd rswk-swf (DE-588)4113937-9 Hochschulschrift gnd-content Biologischer Abbau (DE-588)4145625-7 s Mikrobieller Abbau (DE-588)4039197-8 s Organischer Schadstoff (DE-588)4172787-3 s DE-604 Helmholtz Centre for Environmental Research, UFZ PhD dissertation 2011,4 (DE-604)BV035421074 2011,4 DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024463967&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Banitz, Thomas Modelling bacterial growth, dispersal and biodegradation an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants Mikrobieller Abbau (DE-588)4039197-8 gnd Biologischer Abbau (DE-588)4145625-7 gnd Organischer Schadstoff (DE-588)4172787-3 gnd |
| subject_GND | (DE-588)4039197-8 (DE-588)4145625-7 (DE-588)4172787-3 (DE-588)4113937-9 |
| title | Modelling bacterial growth, dispersal and biodegradation an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants |
| title_auth | Modelling bacterial growth, dispersal and biodegradation an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants |
| title_exact_search | Modelling bacterial growth, dispersal and biodegradation an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants |
| title_full | Modelling bacterial growth, dispersal and biodegradation an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants by Thomas Banitz |
| title_fullStr | Modelling bacterial growth, dispersal and biodegradation an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants by Thomas Banitz |
| title_full_unstemmed | Modelling bacterial growth, dispersal and biodegradation an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants by Thomas Banitz |
| title_short | Modelling bacterial growth, dispersal and biodegradation |
| title_sort | modelling bacterial growth dispersal and biodegradation an experiment based modelling study of the spatiotemporal dynamics of bacterial colonies their responses to dispersal networks and their performance in degrading organic contaminants |
| title_sub | an experiment-based modelling study of the spatiotemporal dynamics of bacterial colonies, their responses to dispersal networks, and their performance in degrading organic contaminants |
| topic | Mikrobieller Abbau (DE-588)4039197-8 gnd Biologischer Abbau (DE-588)4145625-7 gnd Organischer Schadstoff (DE-588)4172787-3 gnd |
| topic_facet | Mikrobieller Abbau Biologischer Abbau Organischer Schadstoff Hochschulschrift |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024463967&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV035421074 |
| work_keys_str_mv | AT banitzthomas modellingbacterialgrowthdispersalandbiodegradationanexperimentbasedmodellingstudyofthespatiotemporaldynamicsofbacterialcoloniestheirresponsestodispersalnetworksandtheirperformanceindegradingorganiccontaminants |