Verfügbarkeit: Bioinformatics for comparative proteomics

Bioinformatics for comparative proteomics:

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Format:	Buch
Sprache:	English
Veröffentlicht:	Totowa, NJ Humana Press 2011
Schriftenreihe:	Methods in molecular biology 694
Schlagworte:	Bioinformatik Proteomanalyse Aufsatzsammlung
Online-Zugang:	Inhaltsverzeichnis
Beschreibung:	XIII, 387 S. graph. Darst.
ISBN:	1607619768 9781607619765

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Datensatz im Suchindex

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adam_text	IX CONTENTS PREFACE ............................................................. V CONTRIBUTORS ......................................................... XI P A R T I: B I O I N F O R M A T I C S F R A M E W O R K F O R C O M P A R A T I V E P R O T E O M I C S 1 PROTEIN BIOINFORMATICS DATABASES AND RESOURCES.......................... 3 CHUMING CHEN, HONGZHAN HUANG, AND CATHY H. WU 2 A GUIDE TO UNIPROT FOR PROTEIN SCIENTISTS ............................... 25 CLAIRE ODONOVAN AND ROLF APWEILER 3 INTERPRO PROTEIN CLASSIFICATION ....................................... 37 JENNIFER MCDOWALL AND SARAH HUNTER 4 REACTOME KNOWLEDGEBASE OF HUMAN BIOLOGICAL PATHWAYS AND PROCESSES............................................. 49 PETER DEUSTACHIO 5 EFIP: A TOOL FOR MINING FUNCTIONAL IMPACT OF PHOSPHORYLATION FROM LITERATURE.................................... 63 CECILIA N. ARIGHI, AMY Y. SIU, CATALINA O. TUDOR, JULES A. NCHOUTMBOUBE, CATHY H. WU, AND VIJAY K. SHANKER 6 A TUTORIAL ON PROTEIN ONTOLOGY RESOURCES FOR PROTEOMIC STUDIES ............. 77 CECILIA N. ARIGHI 7 STRUCTURE-GUIDED RULE-BASED ANNOTATION OF PROTEIN FUNCTIONAL SITES IN UNIPROT KNOWLEDGEBASE ............................. 91 SONA VASUDEVAN, C.R. VINAYAKA, DARREN A. NATALE, HONGZHAN HUANG, ROBEL Y. KAHSAY, AND CATHY H. WU P A R T II: P R O T E O M I C B I O I N F O R M A T I C S 8 MODELING MASS SPECTROMETRY-BASED PROTEIN ANALYSIS ...................... 109 JAN ERIKSSON AND DAVID FENYOE 9 PROTEIN IDENTIFICATION FROM TANDEM MASS SPECTRA BY DATABASE SEARCHING ............................................. 119 NATHAN J. EDWARDS 10 LC-MS DATA ANALYSIS FOR DIFFERENTIAL PROTEIN EXPRESSION DETECTION ........................................ 139 RENCY S. VARGHESE AND HABTOM W. RESSOM 11 PROTEIN IDENTIFICATION BY SPECTRAL NETWORKS ANALYSIS....................... 151 NUNO BANDEIRA 12 SOFTWARE PIPELINE AND DATA ANALYSIS FOR MS/MS PROTEOMICS: THE TRANS-PROTEOMIC PIPELINE........................................ 169 ANDREW KELLER AND DAVID SHTEYNBERG X CONTENTS 13 ANALYSIS OF HIGH-THROUGHPUT ELISA MICROARRAY DATA ..................... 191 AMANDA M. WHITE, DON S. DALY, AND RICHARD C. ZANGAR 14 PROTEOMICS DATABASES AND REPOSITORIES................................. 213 LENNART MARTENS 15 PREPARING MOLECULAR INTERACTION DATA FOR PUBLICATION ...................... 229 SANDRA ORCHARD AND HENNING HERMJAKOB 16 SUBMITTING PROTEOMICS DATA TO PRIDE USING PRIDE CONVERTER ............. 237 HARALD BARSNES, JUAN ANTONIO VIZCAINO, FLORIAN REISINGER, INGVAR EIDHAMMER, AND LENNART MARTENS 17 AUTOMATED DATA INTEGRATION AND DETERMINATION OF POSTTRANSLATIONAL MODIFICATIONS WITH THE PROTEIN INFERENCE ENGINE ............ 255 STUART R. JEFFERYS AND MORGAN C. GIDDINGS 18 AN INTEGRATED TOP-DOWN AND BOTTOM-UP STRATEGY FOR CHARACTERIZATION OF PROTEIN ISOFORMS AND MODIFICATIONS.................. 293 SI WU, NIKOLA TOLIC , ZHIXIN TIAN, ERROL W. ROBINSON, AND LJILJANA PA*A-TOLIC P A R T III: C O M P A R A T I V E P R O T E O M I C S I N S Y S T E M S B I O L O G Y 19 PHOSPHOPROTEOME RESOURCE FOR SYSTEMS BIOLOGY RESEARCH .................. 307 BERND BODENMILLER AND RUEDI AEBERSOLD 20 PROTEIN-CENTRIC DATA INTEGRATION FOR FUNCTIONAL ANALYSIS OF COMPARATIVE PROTEOMICS DATA........................................ 323 PETER B. MCGARVEY, JIAN ZHANG, DARREN A. NATALE, CATHY H. WU, AND HONGZHAN HUANG 21 INTEGRATION OF PROTEOMIC AND METABOLOMIC PROFILING AS WELL AS METABOLIC MODELING FOR THE FUNCTIONAL ANALYSIS OF METABOLIC NETWORKS ...................................... 341 PATRICK MAY, NILS CHRISTIAN, OLIVER EBENHOEH, WOLFRAM WECKWERTH, AND DIRK WALTHER 22 TIME SERIES PROTEOME PROFILING ...................................... 365 CATHERINE A. FORMOLO, MICHELLE MINTZ, ASAKO TAKANOHASHI, KRISTY J. BROWN, ADELINE VANDERVER, BRIAN HALLIGAN, AND YETRIB HATHOUT INDEX . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 379
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indexdate	2024-07-10T00:05:34Z
institution	BVB
isbn	1607619768 9781607619765
language	English
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physical	XIII, 387 S. graph. Darst.
publishDate	2011
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publisher	Humana Press
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series	Methods in molecular biology
series2	Methods in molecular biology
spelling	Bioinformatics for comparative proteomics ed. by Cathy H. Wu ... Totowa, NJ Humana Press 2011 XIII, 387 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 694 Bioinformatik (DE-588)4611085-9 gnd rswk-swf Proteomanalyse (DE-588)4596545-6 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Proteomanalyse (DE-588)4596545-6 s Bioinformatik (DE-588)4611085-9 s b DE-604 Wu, Cathy H. Sonstige oth Methods in molecular biology 694 (DE-604)BV035362695 694 SWB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024381156&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis
spellingShingle	Bioinformatics for comparative proteomics Methods in molecular biology Bioinformatik (DE-588)4611085-9 gnd Proteomanalyse (DE-588)4596545-6 gnd
subject_GND	(DE-588)4611085-9 (DE-588)4596545-6 (DE-588)4143413-4
title	Bioinformatics for comparative proteomics
title_auth	Bioinformatics for comparative proteomics
title_exact_search	Bioinformatics for comparative proteomics
title_full	Bioinformatics for comparative proteomics ed. by Cathy H. Wu ...
title_fullStr	Bioinformatics for comparative proteomics ed. by Cathy H. Wu ...
title_full_unstemmed	Bioinformatics for comparative proteomics ed. by Cathy H. Wu ...
title_short	Bioinformatics for comparative proteomics
title_sort	bioinformatics for comparative proteomics
topic	Bioinformatik (DE-588)4611085-9 gnd Proteomanalyse (DE-588)4596545-6 gnd
topic_facet	Bioinformatik Proteomanalyse Aufsatzsammlung
url	http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=024381156&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA
volume_link	(DE-604)BV035362695
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