Bioinformatics for omics data: methods and protocols
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
New York, NY [u.a.]
Humana
2011
|
| Schriftenreihe: | Methods in molecular biology
719 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | Includes bibliographical references and index |
| Beschreibung: | XII, 584 S. Ill., graph. Darst. |
| ISBN: | 9781617790263 |
Internformat
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| 245 | 1 | 0 | |a Bioinformatics for omics data |b methods and protocols |c ed. by Bernd Mayer |
| 264 | 1 | |a New York, NY [u.a.] |b Humana |c 2011 | |
| 300 | |a XII, 584 S. |b Ill., graph. Darst. | ||
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| 490 | 0 | |a Springer protocols | |
| 500 | |a Includes bibliographical references and index | ||
| 650 | 4 | |a Bioinformatics | |
| 650 | 4 | |a Computational Biology / methods | |
| 700 | 1 | |a Mayer, Bernd |e Sonstige |4 oth | |
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Datensatz im Suchindex
| _version_ | 1804145682401984512 |
|---|---|
| adam_text | Titel: Bioinformatics for omics data
Autor: Mayer, Bernd
Jahr: 2011
Contents
Preface............................................................. v
Contributors......................................................... ix
Part I Omics Bioinformatics Fundamentals
1 Omics Technologies, Data and Bioinformatics Principles.................... 3
Maria V. Schneider and Sandra Orchard
2 Data Standards for Omics Data: The Basis of Data Sharing and Reuse.......... 31
Stephen A. Chervitz, Eric W. Deutsch, Dawn Field, Helen Parkinson,
John Quackenbush, Phillipe Rocca-Serra, Susanna-Assunta Sansone,
Christian J. Stoeckert, Jr., Chris F. Taylor, Ronald Taylor,
and Catherine A. Ball
3 Omics Data Management and Annotation.............................. 71
Arye Harel, Irina Dalah, Shmuel Pietrokovski, Marilyn Safran,
and Dor on Lancet
4 Data and Knowledge Management in Cross-Omics Research Projects.......... 97
Martin Wiesinger, Martin Haiduk, Marco Behr, Henrique Lopes de
Abreu Madeira, Gemot Glöckler, Paul Perco, and Arno Lukas
5 Statistical Analysis Principles for Omics Data............................. 113
Daniela Dunkler, Fátitna Sánchez-Cabo, and Georg Heinze
6 Statistical Methods and Models for Bridging Omics Data Levels.............. 133
Simon Rogers
7 Analysis of Time Course Omics Datasets................................ 153
Martin G. Grigorov
8 The Use and Abuse of -Ornes........................................ 173
Sonja J. Prohaska and Peter F. Stadler
Part II Omics Data and Analysis Tracks
9 Computational Analysis of High Throughput Sequencing Data.............. 199
Steve Hoffmann
10 Analysis of Single Nucleotide Polymorphisms in Case-Control Studies......... 219
TonghongLi, Dov Shijfman, and Rainer Oberbauer
11 Bioinformatics for Copy Number Variation Data......................... 235
Melissa Warden, Roger Pique-Regi, Antonio Ortega,
and Shahab Asgharzadeh
12 Processing ChlP-Chip Data: From the Scanner to the Browser............... 251
Pierre Cauchy, Touati Benoukraf, and Pierre Ferrier
13 Insights Into Global Mechanisms and Disease by Gene Expression Profiling..... 269
Fdtima Sánchez-Cabo, Johannes Rainer, Ana Dopazo,
Zlatko Trajanoski, and Hubert Hackl
VII
vüi Contents
14 Bioinformatics for RNomics......................................... 299
Kristin Reiche, Katharina Schutt, Kerstin Boll,
Friedemann Horn, and Jörg Hackermüller
15 Bioinformatics for Qualitative and Quantitative Proteomics................. 331
Chris Bielow, Clemens Gröpl, Oliver Kohlbacher, and Knut Reinert
16 Bioinformatics for Mass Spectrometry-Based Metabolomics................. 351
David P. Enot, Bernd Haas, and Klaus M. Weinberger
Part III Applied Omics Bioinformatics
17 Computational Analysis Workflows for Omics Data Interpretation............ 379
Irmgard Mühlberger, Julia Wilflingseder, Andreas Bernthaler,
Raul Féchete, Arno Lukas, and Paul Perco
18 Integration, Warehousing, and Analysis Strategies of Omics Data............. 399
Srinubabu Gedela
19 Integrating Omics Data for Signaling Pathways, Interactome Reconstruction,
and Functional Analysis............................................ 415
Paolo Tieri, Alberto de la Fuente, Alberto Termanini,
and Claudio Franceschi
20 Network Inference from Time-Dependent Omics Data.................... 435
Paola Lecca, Thanh-Phuong Nguyen, Corrado Priami, and Paola Quaglia
21 Omics and Literature Mining........................................ 457
Vinod Kumar
22 Omics-Bioinformatics in the Context of Clinical Data..................... 479
Gert Mayer, Georg Heinze, Harald Mischak, Merel E. Hellentons,
HiddoJ. Lumbers Heerspink, Stephan J.L. Bakker, Dick de Zeeuw,
Martin Haiduk, Peter Rossing, and Rainer Oberbauer
23 Omics-Based Identification of Pathophysiological Processes................. 499
Hiroshi Tanaka and Soichi Ogishima
24 Data Mining Methods in Omics-Based Biomarker Discovery................ 511
Fan Zhang and Jake X Chen
25 Integrated Bioinformatics Analysis for Cancer Target Identification........... 527
Yongliang Tang, S. James Adelstein, and Amin I. Kassis
26 Omics-Based Molecular Target and Biomarker Identification................ 547
Zgang-Zhi Hu, Hongzhan Huang, Cathy H. Wu, Mira Jung,
Anatoly Dritschilo, Anna T. Riegel, and Anton Wellstein
Index.............................................................. 573
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| isbn | 9781617790263 |
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| publishDate | 2011 |
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| publisher | Humana |
| record_format | marc |
| series | Methods in molecular biology |
| series2 | Methods in molecular biology Springer protocols |
| spelling | Bioinformatics for omics data methods and protocols ed. by Bernd Mayer New York, NY [u.a.] Humana 2011 XII, 584 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 719 Springer protocols Includes bibliographical references and index Bioinformatics Computational Biology / methods Mayer, Bernd Sonstige oth Erscheint auch als Online-Ausgabe 978-1-61779-027-0 Methods in molecular biology 719 (DE-604)BV035362695 719 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022545505&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Bioinformatics for omics data methods and protocols Methods in molecular biology Bioinformatics Computational Biology / methods |
| title | Bioinformatics for omics data methods and protocols |
| title_auth | Bioinformatics for omics data methods and protocols |
| title_exact_search | Bioinformatics for omics data methods and protocols |
| title_full | Bioinformatics for omics data methods and protocols ed. by Bernd Mayer |
| title_fullStr | Bioinformatics for omics data methods and protocols ed. by Bernd Mayer |
| title_full_unstemmed | Bioinformatics for omics data methods and protocols ed. by Bernd Mayer |
| title_short | Bioinformatics for omics data |
| title_sort | bioinformatics for omics data methods and protocols |
| title_sub | methods and protocols |
| topic | Bioinformatics Computational Biology / methods |
| topic_facet | Bioinformatics Computational Biology / methods |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022545505&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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