Research in Computational Molecular Biology: 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings
Gespeichert in:
| Format: | Tagungsbericht Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Berlin [u.a.]
Springer
2011
|
| Schriftenreihe: | Lecture notes in computer science
6577 |
| Schlagworte: | |
| Online-Zugang: | Inhaltstext Inhaltsverzeichnis |
| Beschreibung: | XVII, 580 S. Ill., graph. Darst. 235 mm x 155 mm |
| ISBN: | 9783642200359 3642200354 |
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Datensatz im Suchindex
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IMAGE 1
TABLE OF CONTENTS
BACTERIAL COMMUNITY RECONSTRUCTION USING COMPRESSED SENSING 1 AMNON AMIR
AND OR ZUK
CONSTRAINED DE NOVO SEQUENCING OF PEPTIDES WITH APPLICATION TO
CONOTOXINS 16
SWAPNIL BHATIA, YONG J. KIL, BEATRIX UEBERHEIDE, BRIAN CHAIT, LEMMUEL L.
TAYO, LOURDES J. CRUZ, BINGWEN LU, JOHN R. YATES III, AND MARSHALL BERN
METABOLIC NETWORK ANALYSIS DEMYSTIFIED 31
LEONID CHINDELEVITCH, AVIV REGEV, AND BONNIE BERGER
CAUSAL REASONING ON BIOLOGICAL NETWORKS: INTERPRETING TRANSCRIPTIONAL
CHANGES (EXTENDED ABSTRACT) 34
LEONID CHINDELEVITCH, DANIEL ZIEMEK, AHMED ENAYETALLAH, RANJIT RANDHAWA,
BEN SIDDERS, CHRISTOPH BROCKEL, AND ENOCH HUANG
HAPSEMBLER: AN ASSEMBLER FOR HIGHLY POLYMORPHIC GENOMES 38 NILGUN DONMEZ
AND MICHAEL BRUDNO
DISCOVERY AND CHARACTERIZATION OF CHROMATIN STATES FOR SYSTEMATIC
ANNOTATION OF THE HUMAN GENOME 53
JASON ERNST AND MANOLIS KELLIS
DISEASE GENE PRIORITIZATION BASED ON TOPOLOGICAL SIMILARITY IN
PROTEIN-PROTEIN INTERACTION NETWORKS 54
SINAN ERTEN, GURKAN BEBEK, AND MEHMET KOYUTUERK
UNDERSTANDING GENE SEQUENCE VARIATION IN THE CONTEXT OF TRANSCRIPTION
REGULATION IN YEAST 69
IRIT GAT- VIKS, RENANA MEILER, MARTIN KUPIEC, AND RON SHAMIR
IDENTIFYING BRANCHED METABOLIC PATHWAYS BY MERGING LINEAR METABOLIC
PATHWAYS 70
ALLISON P. HEATH, GEORGE N. BENNETT, AND LYDIA E. KAVRAKI
A PROBABILISTIC MODEL FOR SEQUENCE ALIGNMENT WITH CONTEXT-SENSITIVE
INDELS 85
GLENN HICKEY AND MATHIEU BLANCHETTE
SIMULTANEOUS STRUCTURAL VARIATION DISCOVERY IN MULTIPLE PAIRED-END
SEQUENCED GENOMES 104
FEREYDOUN HORMOZDIARI, IMAN HAJIRASOULIHA, ANDREW MCPHERSON, EVAN E.
EICHLER, AND S. CENK SAHINALP
BIBLIOGRAFISCHE INFORMATIONEN HTTP://D-NB.INFO/1010287508
DIGITALISIERT DURCH
IMAGE 2
XIV TABLE OF CONTENTS
VARIABLE SELECTION THROUGH CORRELATION SIFTING 106
JIM C. HUANG AND NEBOJSA JOJIC
WEIGHTED GENOMIC DISTANCE CAN HARDLY IMPOSE A BOUND ON THE PROPORTION OF
TRANSPOSITIONS 124
SHUAI JIANG AND MAX A. ALEKSEYEV
PSAR: MEASURING MULTIPLE SEQUENCE ALIGNMENT RELIABILITY BY PROBABILISTIC
SAMPLING (EXTENDED ABSTRACT) 134
JAEBUM KIM AND JIAN MA
PEDIGREE RECONSTRUCTION USING IDENTITY BY DESCENT 136
BONNIE KIRKPATRICK, SHUAI CHENG LI, RICHARD M. KARP, AND ERAN HALPERIN
A QUANTITATIVE MODEL OF GLUCOSE SIGNALING IN YEAST REVEALS AN INCOHERENT
FEED FORWARD LOOP LEADING TO A SPECIFIC, TRANSIENT PULSE OF
TRANSCRIPTION 153
SOORAJ KUTTYKRISHNAN, JEFFREY SABINA, LAURA LANGTON, MARK JOHNSTON, AND
MICHAEL R. BRENT
INFERRING MECHANISMS OF COMPENSATION FROM E-MAP AND SGA DATA USING LOCAL
SEARCH ALGORITHMS FOR MAX CUT 154
MARK D.M. LEISERSON, DIANA TATAR, LENORE J. COWEN, AND BENJAMIN J.
HESCOTT
ISOLASSO: A LASSO REGRESSION APPROACH TO RNA-SEQ BASED TRANSCRIPTOME
ASSEMBLY (EXTENDED ABSTRACT) 168
WEI LI, JIANXING FENG, AND TAO JIANG
HAPLOTYPE RECONSTRUCTION IN LARGE PEDIGREES WITH MANY UNTYPED
INDIVIDUALS 189
XIN LI AND JING LI
LEARNING CELLULAR SORTING PATHWAYS USING PROTEIN INTERACTIONS AND
SEQUENCE MOTIFS 204
TIEN-HO LIN, ZIV BAR-JOSEPH, AND ROBERT F. MURPHY
A GEOMETRIC ARRANGEMENT ALGORITHM FOR STRUCTURE DETERMINATION OF
SYMMETRIC PROTEIN HOMO-OLIGOMERS FROM NOES AND RDCS 222
JEFFREY W. MARTIN, ANTHONY K. YAN, CHRIS BAILEY-KELLOGG, PEI ZHOU, AND
BRUCE R. DONALD
PAIRED DE BRUIJN GRAPHS: A NOVEL APPROACH FOR INCORPORATING MATE PAIR
INFORMATION INTO GENOME ASSEMBLERS 238
PAUL MEDVEDEV, SON PHAM, MARK CHAISSON, GLENN TESLER, AND PAVEL PEVZNER
AN OPTIMIZATION-BASED SAMPLING SCHEME FOR PHYLOGENETIC TREES 252 NAVODIT
MISRA, GUY BLELLOCH, R. RAVI, AND RUSSELL SCHWARTZ
IMAGE 3
TABLE OF CONTENTS XV
MULTIPLEX DE NOVO SEQUENCING OF PEPTIDE ANTIBIOTICS 267
HOSEIN MOHIMANI, WEI-TING LIU, YU-LIANG YANG, SUSANA P. GAUDENCIO,
WILLIAM FENICAL, PIETER C. DORRESTEIN, AND PAVEL A. PEVZNER
FRACTAL AND TRANSGENERATIONAL GENETIC EFFECTS ON PHENOTYPIC VARIATION
AND DISEASE RISK (INVITED TALK) 282
JOE NADEAU
AREM: ALIGNING SHORT READS FROM CHLP-SEQUENCING BY EXPECTATION
MAXIMIZATION 283
DANIEL NEWKIRK, JACOB BIESINGER, ALVIN CHON, KYOKO YOKOMORI, AND XIAOHUI
XIE
BLOCKED PATTERN MATCHING PROBLEM AND ITS APPLICATIONS IN PROTEOMICS 298
JULIO NG, AMIHOOD AMIR, AND PAVEL A. PEVZNER
A THREE-DIMENSIONAL MODEL OF THE YEAST GENOME 320
WILLIAM NOBLE, ZHI-JUN DUAN, MIRELA ANDRONESCU, KEVIN SCHUTZ, SEAN
MCLLWAIN, YOO JUNG KIM, CHOLI LEE, JAY SHENDURE, STANLEY FIELDS, AND C.
ANTHONY BLAU
OPTIMIZATION OF COMBINATORIAL MUTAGENESIS 321
ANDREW S. PARKER, KARL E. GRISWOLD, AND CHRIS BAILEY-KELLOGG
SEEING MORE IS KNOWING MORE: V3D ENABLES REAL-TIME 3D VISUALIZATION AND
QUANTITATIVE ANALYSIS OF LARGE-SCALE BIOLOGICAL IMAGE DATA SETS 336
HANCHUAN PENG AND FUHUI LONG
T-IDBA: A DE NOVO ITERATIVE DE BRUIJN GRAPH ASSEMBLER FOR TRANSCRIPTOME
(EXTENDED ABSTRACT) 337
YU PENG, HENRY CM. LEUNG, S.M. YIU, AND FRANCIS Y.L. CHIN
EXPERIMENT SPECIFIC EXPRESSION PATTERNS 339
TOBIAS PETRI, ROBERT KUEFFNER, AND RALF ZIMMER
GEOMETRIC INTERPRETATION OF GENE EXPRESSION BY SPARSE RECONSTRUCTION OF
TRANSCRIPT PROFILES 355
YOSEF PRAT, MENACHEM FROMER, MICHAL LINIAL, AND NATHAN LINIAL
A RIBOSOME FLOW MODEL FOR ANALYZING TRANSLATION ELONGATION (EXTENDED
ABSTRACT) 358
SHLOMI REUVENI, ISAAC MEILIJSON, MARTIN KUPIEC, EYTAN RUPPIN, AND TAMIR
TULLER
IMAGE 4
XVI TABLE OF CONTENTS
DESIGN OF PROTEIN-PROTEIN INTERACTIONS WITH A NOVEL ENSEMBLE-BASED
SCORING ALGORITHM 361
KYLE E. ROBERTS, PATRICK R. CUSHING, PRISCA BOISGUERIN, DEAN R. MADDEN,
AND BRUCE R. DONALD
COMPUTING FRAGMENTATION TREES FROM METABOLITE MULTIPLE MASS SPECTROMETRY
DATA 377
KERSTIN SCHEUBERT, FRANZISKA HUFSKY, FLORIAN RASCHE, AND SEBASTIAN
BOECKER
METRIC LABELING AND SEMI-METRIC EMBEDDING FOR PROTEIN ANNOTATION
PREDICTION 392
EMRE SEFER AND CARL KINGSFORD
EFFICIENT TRAVERSAL OF BETA-SHEET PROTEIN FOLDING PATHWAYS USING
ENSEMBLE MODELS 408
SOLOMON SHENKER, CHARLES W. O'DONNELL, SRINIVAS DEVADAS, BONNIE BERGER,
AND JEROME WALDISPIIHL
OPTIMALLY ORIENTING PHYSICAL NETWORKS 424
DANA SILVERBUSH, MICHAEL ELBERFELD, AND RODED SHARAN
OPERA: RECONSTRUCTING OPTIMAL GENOMIC SCAFFOLDS WITH HIGH-THROUGHPUT
PAIRED-END SEQUENCES 437
SONG GAO, NIRANJAN NAGARAJAN, AND WING-KIN SUNG
INCREASING POWER OF GROUPWISE ASSOCIATION TEST WITH LIKELIHOOD RATIO
TEST 452
JAE HOON SUL, BUHM HAN, AND ELEAZAR ESKIN
CONSERVATIVE EXTENSIONS OF LINKAGE DISEQUILIBRIUM MEASURES FROM PAIRWISE
TO MULTI-LOCI AND ALGORITHMS FOR OPTIMAL TAGGING SNP SELECTION 468
RYAN TARPINE, FUMEI LAM, AND SORIN ISTRAIL
PROTEIN LOOP CLOSURE USING ORIENTATIONAL RESTRAINTS FROM NMR DATA 483
CHITTARANJAN TRIPATHY, JIANYANG ZENG, PEI ZHOU, AND BRUCE RANDALL DONALD
DE NOVO DISCOVERY OF MUTATED DRIVER PATHWAYS IN CANCER 499
FABIO VANDIN, ELI UPFAL, AND BENJAMIN J. RAPHAEL
AN UNBIASED ADAPTIVE SAMPLING ALGORITHM FOR THE EXPLORATION OF RNA
MUTATIONAL LANDSCAPES UNDER EVOLUTIONARY PRESSURE 501
JEROME WALDISPIIHL AND YANN PONTY
NONPARAMETRIC COMBINATORIAL SEQUENCE MODELS 516
FABIAN L. WAUTHIER, MICHAEL I. JORDAN, AND NEBOJSA JOJIC
IMAGE 5
TABLE OF CONTENTS XVII
ALGORITHMS FOR MDC-BASED MULTI-LOCUS PHYLOGENY INFERENCE 531 YUN YU,
TANDY WARNOW, AND LUAY NAKHLEH
RICH PARAMETERIZATION IMPROVES RNA STRUCTURE PREDICTION 546
SHAY ZAKOV, YOAV GOLDBERG, MICHAEL ELHADAD, AND MICHAL ZIV-UKELSON
A BAYESIAN APPROACH FOR DETERMINING PROTEIN SIDE-CHAIN ROTAMER
CONFORMATIONS USING UNASSIGNED NOE DATA 563
JIANYANG ZENG, KYLE E. ROBERTS, PEI ZHOU, AND BRUCE R. DONALD
AUTHOR INDEX 579 |
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| spelling | Research in Computational Molecular Biology 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings Vinee Bafna ... (eds.) Berlin [u.a.] Springer 2011 XVII, 580 S. Ill., graph. Darst. 235 mm x 155 mm txt rdacontent n rdamedia nc rdacarrier Lecture notes in computer science 6577 : Lecture notes in bioinformatics Molekulare Bioinformatik (DE-588)4531334-9 gnd rswk-swf (DE-588)1071861417 Konferenzschrift 2011 Vancouver British Columbia gnd-content Molekulare Bioinformatik (DE-588)4531334-9 s DE-604 Bafna, Vineet Sonstige oth RECOMB 15. 2011 Vancouver, British Columbia Sonstige (DE-588)16106799-2 oth Erscheint auch als Online-Ausgabe Research in Computational Molecular Biology Lecture notes in computer science 6577 (DE-604)BV000000607 6577 X:MVB text/html http://deposit.dnb.de/cgi-bin/dokserv?id=3677707&prov=M&dok_var=1&dok_ext=htm Inhaltstext DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022471015&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Research in Computational Molecular Biology 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings Lecture notes in computer science Molekulare Bioinformatik (DE-588)4531334-9 gnd |
| subject_GND | (DE-588)4531334-9 (DE-588)1071861417 |
| title | Research in Computational Molecular Biology 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings |
| title_auth | Research in Computational Molecular Biology 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings |
| title_exact_search | Research in Computational Molecular Biology 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings |
| title_full | Research in Computational Molecular Biology 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings Vinee Bafna ... (eds.) |
| title_fullStr | Research in Computational Molecular Biology 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings Vinee Bafna ... (eds.) |
| title_full_unstemmed | Research in Computational Molecular Biology 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings Vinee Bafna ... (eds.) |
| title_short | Research in Computational Molecular Biology |
| title_sort | research in computational molecular biology 15th annual international conference recomb 2011 vancouver bc canada march 28 31 2011 proceedings |
| title_sub | 15th Annual International Conference, RECOMB 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings |
| topic | Molekulare Bioinformatik (DE-588)4531334-9 gnd |
| topic_facet | Molekulare Bioinformatik Konferenzschrift 2011 Vancouver British Columbia |
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