Plant metabolism and biotechnology:
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | German |
| Veröffentlicht: |
Chichester
Wiley-Blackwell
2011
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | 400 S. Ill. |
| ISBN: | 9780470747032 |
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Datensatz im Suchindex
| _version_ | 1804143822404321280 |
|---|---|
| adam_text | Plant Metabolism and
Biotechnology
Edited by
HIROSHIASHIHARA
Department of Biological Sciences, Graduate School of Humanities
and Sciences, Ochanomizu University, Tokyo, Japan
ALAN CROZIER
Plant Products and Human Nutrition Group, School of Medicine,
College of Medical, Veterinary and Life Sciences,
University of Glasgow, Glasgow, UK
ATSUSHI KOMAMINE
The Research Institute of Evolutionary Biology,
Tokyo, Japan
) WILEY
A John Wiley and Sons, Ltd , Publication
Contents
List of Contributors xiii
Preface xv
1 Biosynthesis and Metabolism of Starch and Sugars 1
Frederik Bornke and Sophia Sonnewald
1 1 Introduction 1
1 2 Carbon Partitioning in Mesophyll Cells 2
1 3 Sucrose Biosynthesis in Source Leaves 3
131 Regulatory Enzymes of the Pathway 4
1 4 Starch Metabolism in Source Leaves 7
141 Starch Synthesis within the Chloroplast 7
142 Starch Breakdown in Leaves and Metabolism of its Degradation
Products in the Cytosol 9
1 5 Sucrose to Starch Conversion in Storage Organs 12
1 6 Metabolic Engineering of Carbohydrate Metabolism 14
161 Increasing Starch Content 14
162 Altering Starch Quality 15
1 7 Engineering Soluble Sugars 16
1 8 Production of Novel Carbohydrates in Transgenic Plants 17
1 9 Network Analysis of Carbohydrate Metabolism 18
Acknowledgements 19
References 19
2 Lipid Biosynthesis 27
David Hildebrand
2 1 Introduction 27
2 2 Fatty Acid Synthesis 29
2 3 Fatty Acid Desaturases 32
231 A-9 Desaturases 32
232 A-12 Desaturases 35
233 w-3 Desaturases 37
2 4 Lipid Signals 38
2 5 Algae 38
2 6 Membrane Synthesis 39
2 7 TAG Biosynthesis 43
vi Contents
2 8 Genetic Engineering of Oilseed for Industrial Uses 46
2 9 Plant Oils as a Renewable Resource 48
Acknowledgements 51
References 52
3 Symbiotic Nitrogen Fixation 67
Hiroshi Kouchi
3 1 Nitrogen Fixing Organisms and the Nitrogenase System 67
311 Nitrogen Fixing Microorganisms 67
312 The Nitrogenase Complex 68
313 Nif Genes and Regulation 69
3 2 Symbiotic Nodule Formation in Legume Plants 70
321 Infection and the Nodulation Process 70
322 Nod Factors, Early Symbiotic Signalling and the Rhizobial
Infection Process 72
3 3 Mutual Interactions between Host Cells and Bacteroids in Legume
Nodules 76
331 Differentiation of Rhizobia into Bacteroids 76
332 Protection of the Nitrogenase System from Oxygen in Root Nodules 78
333 Metabolite Exchange between the Plant Cell Cytosol and Bacteroids 79
3 4 Molecular Genetic Approaches to the Host Regulation of Nitrogen
Fixation 83
341 The Fix Mutants: Host Legume-Determined Ineffective Nodules 83
342 Metabolic Partnerships Unveiled by Fix Mutants 87
343 Premature Senescence in Fix Nodules and Symbiosome
Organisation 90
Acknowledgements 92
References 92
4 Sulfur Metabolism 103
Hideki Takahashi
4 4 Cysteine Biosynthesis 114
4 1 Introduction
4 2 Sulfate
4 3 Sulfate
Transport
Sulfate Transport Mechanisms
Sulfate Uptake System
Transport of Sulfate from Roots to Shoots
Subcellular Transport of Sulfate
Redistribution of Sulfur
Regulation of Sulfate Uptake
Reduction
ATP Sulfurylase
APS Reductase
APS Kinase
Sulfite Reductase
Regulation of Sulfate Reduction
Contents vii
441 O-Acetylserine(thiol)lyase 114
442 Serine Acetyltransferase 115
443 Cysteine Synthase Complex 116
4 5 Methionine Biosynthesis 117
451 Biosynthetic Pathways 117
452 Regulation of Methionine Biosynthesis 118
4 6 Regulators for Coordination of Sulfur Metabolism 118
461 Transcriptional Regulators 118
462 MicroRNA-395 119
463 OAS-Mediated Regulation 120
464 Outlook for Application 120
References 121
5 Nucleotide Metabolism 135
Rita Zrenner and Hiroshi Ashihara
5 1 Introduction 135
5 2 Pyrimidine Metabolism 136
521 De Novo Biosynthetic Pathway 136
522 Biosynthesis of Thymidine Nucleotides 138
523 Salvage Pathways 139
524 Catabolism 140
525 Secondary Metabolites 142
5 3 Purine Metabolism 142
531 De Novo Biosynthetic Pathway 142
532 Salvage Pathways 145
533 Catabolism 146
534 Secondary Metabolites 148
5 4 Pyridine Metabolism 149
541 De Novo Biosynthetic Pathway 149
542 Pyridine Nucleotide Cycle 149
543 Secondary Metabolites 152
5 5 Biotechnological Approaches 152
551 New Herbicide Targets 153
552 Increased Growth by Increased Nucleotide Precursor Availability 154
553 Increased Potato Tuber Yield by Modulating Adenylate Pools 155
References 156
6 Purine Alkaloid Metabolism 163
Hiroshi Ashihara, Shinjiro Ogita and Alan Crozier
6 1 Introduction 163
6 2 Classification of Purine Alkaloids 166
6 3 Occurrence of Purine Alkaloids 166
6 4 Biosynthesis of Caffeine 167
641 Biosynthetic Pathway from Purine Nucleotides 167
642 Caffeine Biosynthesis from Xanthosine 168
643 Cellular Localisation of Caffeine Biosynthesis 170
viii Contents
6 5 Catabolism of Caffeine 171
6 6 Physiological and Ecological Aspects of Purine Alkaloid Metabolism
in Plants 173
661 Tissue Age and Caffeine Metabolism 173
662 Stress Response of Caffeine Biosynthesis 173
663 Ecological Role of Purine Alkaloids 176
6 7 Metabolic Engineering of Caffeine In Planta 176
671 Tissue Culture Technologies of Coffee Plants 177
672 Suppression of Caffeine Biosynthesis in Coffee Plants 177
673 Production of Caffeine in Tobacco Plants 180
674 Construction of Transgenic Caffeine-Producing Tobacco Plants 180
675 Repelling Effects on Tobacco Cutworms 181
676 Perspectives 183
References 184
7 Nicotine Biosynthesis 191
Tsubasa Shoji and Takashi Hashimoto
Introduction
Pathways and Enzymes
721 Pyrrolidine Formation
722 Pyridine Formation
723 Coupling of the Pyrrolidine and Pyridine Rings
724 Nornicotine Formation
725 Anabasine and Anatabine Formation
Compartmentation and Trafficking
731 Long-Distance Transport from Roots to Leaves
732 Cell-Specific Nicotine Biosynthesis in Roots
733 Nicotine Transporters Involved in Vacuolar Sequestration
Gene Regulation
741 Jasmonate
742 Ethylene
743 Auxin
744 NIC Regulatory Genes
Metabolic Engineering
Recent Developments
Summary
References
Terpenoid Biosynthesis 217
Dae-Kyun Ro
8 1 Introduction 217
8 2 Terpenoid Diversity 218
8 3 Mechanistic Aspects of Terpenoid Biogenesis 222
8 4 Terpene Synthase - Structure, Evolution and Engineering 223
8 5 Two Distinct Pathways for Isopentenyl Diphosphate (IPP) Biosynthesis 225
Contents ix
851 Mevalonate (MVA) Pathway 225
852 Methyl Erythritol Phosphate (MEP) Pathway 227
8 6 Subcellular and Cellular Compartmentalisations of Terpenoid
Metabolism 228
861 Subcellular Localisation and Metabolic Cross-Talk between
MVA and MEP Pathways 228
862 Cellular Compartmentalisation of Terpenoid Metabolism 229
8 7 Gene Clusters in Terpenoid Metabolism 230
8 8 Metabolic Engineering of Terpenoid Metabolism 231
881 Microbial Metabolic Engineering 232
882 Plant Metabolic Engineering 233
8 9 Concluding Remarks 235
References 235
Benzylisoquinoline Alkaloid Biosynthesis 241
Isabel Desgagne-Penix and Peter J Facchini
Introduction
Biosynthesis
921 (S)-Norcoclaurine
922 (5 Reticuline
923 Morphinan Alkaloids
924 Sanguinarine
925 Aporphine and Protoberberine Alkaloids
926 Bisbenzylisoquinoline Alkaloids and Laudanine
Localisation and Transport of Benzylisoquinoline Alkaloids and their
Biosynthetic Enzymes
931 Cellular and Subcellular Localisation
932 Transport
Regulation
941 Gene Regulation
942 Signal Transduction
Application to Biotechnology
951 Mutagenesis
952 Genetic Transformation and Metabolic Engineering
953 Metabolic Engineering
Conclusions
References
10 Monoterpenoid Indole Alkaloid Biosynthesis 263
Vincenzo De Luca
10 1 Introduction 263
10 2 Monoterpenoid Indole Alkaloid (MIA) Biosynthesis 265
10 2 1 Contributions of Two Separate Pathways in MIA Assembly 265
10 2 2 Genes for the Biosynthesis of Secologanin 266
10 2 3 MIA Biosynthesis in Catharanthus Roseus 266
x Contents
10 2 4 MIA Biosynthesis in Rauvolfia Serpentina 269
10 2 5 MIA Biosynthesis in Camptotheca Acuminata and
Ophiorrhiza Pumila 269
10 3 MIA Pathway Gene Discovery will be Enhanced by Large-Scale
Sequencing and Comparative Analyses 271
10 3 1 Pyrosequencing 271
10 3 2 Sequencing by Expressed Sequence Tag Approaches 271
10 4 Developmental and Environmental Regulation of MIA Biosynthesis 272
10 4 1 Why is the Biosynthesis of MIAs in Catharanthus
Compartmented in Different Cell Types and Within
Different Organelles? 273
10 4 2 Why does MIA Biosynthesis Occur in at Least Five
Subcellular Compartments? 273
10 4 3 Why is the MEP Pathway and Geraniol-10-Hydroxylase
Expressed in Internal Phloem-Associated Parenchyma Cells? 276
10 4 4 Why is MIA Biosynthesis Regulated and Organised
Differently in above- and below-Ground Organs in
Catharanthus Roseus? 277
10 4 5 How is MIA Biosynthesis Regulated? 278
10 4 6 Why has Plant Cell Culture Failed as a Commercial
Production System? 280
10 5 Metabolic Engineering using Enzymes with Altered Substrate
Specificity 282
10 6 Conclusion 282
Acknowledgements 283
References 283
11 Flavonoid Biosynthesis 293
Indu B Jaganath and Alan Crozier
11 1 Introduction 293
11 2 Advances in Molecular Approaches for Flavonoid Biosynthetic
Pathway Elucidation 294
11 2 1 Genetic and Transgenic Approaches 295
11 2 2 Metabolomics 297
11 2 3 Systems Biology Approach 297
11 3 The Flavonoid Biosynthetic Pathway as it is Today 299
11 3 1 Gateway into the Flavonoid Pathway 299
11 3 2 Isoflavonoid Branch Pathway 301
11 3 3 Flavanone Branch Pathway 302
11 3 4 Flavone Branch Pathway 305
11 3 5 Flavonol Branch Pathway 305
11 3 6 Proanthocyanidin Branch Pathway 308
11 3 7 Anthocyanidin Branch Pathway 308
11 4 Conclusions 311
References 313
Contents xi
12 Pigment Biosynthesis I Anthocyanins 321
Yoshihiro Ozeki, Yuki Matsuba, Yutaka Abe, Naoyuki Umemoto and
Nobuhiro Sasaki
12 1 Introduction 321
12 2 The Anthocyanin Biosynthetic Pathway 322
12 3 Glycosylation of Anthocyanidins 325
12 4 Acylation of Anthocyanin Glycosides 327
12 5 Transport of Anthocyanins from Cytosol to Vacuoles 331
12 6 Concluding Remarks 335
References 336
13 Pigment Biosynthesis II: Betacyanins and Carotenoids 343
Masaaki Sakuta and Akemi Ohmiya
13 1 Betacyanins 343
13 1 1 Biosynthesis 344
13 1 2 Factors Controlling Betacyanin Biosynthesis 347
13 1 3 Molecular Mechanism of the Mutual Exclusion of
Anthocyanins and Betacyanins 347
13 1 4 Betacyanins as Food Colourants 348
13 2 Carotenoids 350
13 2 1 Carotenoid Diversity 350
13 2 2 Carotenoid Biosynthesis 352
13 2 3 Carotenoid Degradation 354
13 2 4 Regulation of Carotenoid Biosynthesis 355
13 2 5 Regulation of Carotenoid Accumulation Other
than via Biosynthesis 357
13 3 Metabolic Engineering of Carotenoids 357
13 3 1 Genetic Manipulation for Elevated ^-Carotene 357
13 3 2 Genetic Manipulation for Ketocarotenoid Production 359
References 361
14 Metabolomics in Plant Biotechnology 373
Yozo Okazaki, Akira Oikawa, Miyako Kusano, Fumio Matsuda and
Kazuki Saito
14 1 Introduction 373
14 2 Analytical Technologies 373
14 2 1 Gas Chromatography-Mass Spectrometry 373
14 2 2 Liquid Chromatography-Mass Spectrometry 374
14 2 3 Capillary Electrophoresis-Mass Spectrometry 375
14 2 4 Fourier Transform Ion Cyclotron Resonance Mass
Spectrometry (FT-ICR MS) 375
14 2 5 Nuclear Magnetic Resonance Spectroscopy 376
14 3 Informatics Techniques 376
14 4 Biotechnological Application 378
xii Contents
14 4 1 Application for Functional Genomics 378
14 4 2 Application for Metabolome QTL Analysis 378
14 4 3 Application for Evaluation of Genetically Modified Organisms 379
14 4 4 Application for Identification of Biomarkers 380
Acknowledgements 381
References 381
Index 389
|
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