Parallel scientific computing and optimization: advances and applications
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
New York, NY
Springer
2009
|
| Schriftenreihe: | Springer optimization and its applications
27 |
| Schlagworte: | |
| Online-Zugang: | Cover Kapitel 2 Vorwort 1 Inhaltsverzeichnis |
| Beschreibung: | XXIII, 274 S. Ill., graph. Darst. |
| ISBN: | 9780387097060 |
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Datensatz im Suchindex
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| adam_text | PARALLEL SCIENTIFIC COMPUTING AND OPTIMIZATION ADVANCES AND APPLICATIONS
BY RAIMONDAS CIEGIS VILNIUS GEDIMINAS TECHNICAL UNIVERSITY, LITHUANIA
DAVID HENTY UNIVERSITY OF EDINBURGH, UNITED KINGDOM BO KAEGSTROEM UMEAE
UNIVERSITY, SWEDEN JULIUS ZILINSKAS VILNIUS GEDIMINAS TECHNICAL
UNIVERSITY AND INSTITUTE OF MATHEMATICS AND INFORMATICS, LITHUANIA *
SPRINGER CONTENTS PREFACE V LIST OF CONTRIBUTORS XIX PART I PARALLEL
ALGORITHMS FOR MATRIX COMPUTATIONS RECSY AND SCASY LIBRARY SOFTWARE:
RECURSIVE BLOCKED AND PARALLEL ALGORITHMS FOR SYLVESTER-TYPE MATRIX
EQUATIONS WITH SOME APPLICATIONS 3 ROBERT GRANAT, ISAK JONSSON, AND BO
KAEGSTROEM 1 MOTIVATION AND BACKGROUND 3 2 VARIANTS OF BARTELS-STEWART S
SCHUR METHOD 5 3 BLOCKING STRATEGIES FOR REDUCED MATRIX EQUATIONS 6 3.1
EXPLICIT BLOCKED METHODS FOR REDUCED MATRIX EQUATIONS 6 3.2 RECURSIVE
BLOCKED METHODS FOR REDUCED MATRIX EQUATIONS 7 4 PARALLEL ALGORITHMS FOR
REDUCED MATRIX EQUATIONS 9 4.1 DISTRIBUTED WAVEFRONT ALGORITHMS 10 4.2
PARALLELIZATION OF RECURSIVE BLOCKED ALGORITHMS 11 5 CONDITION
ESTIMATION 11 5.1 CONDITION ESTIMATION IN RECSY 13 5.2 CONDITION
ESTIMATION IN SCASY 13 6 LIBRARY SOFTWARE HIGHLIGHTS 13 6.1 THE RECSY
LIBRARY 13 6.2 THE SCASY LIBRARY 14 7 EXPERIMENTAL RESULTS 16 8 SOME
CONTROL APPLICATIONS AND EXTENSIONS 18 8.1 CONDITION ESTIMATION OF
SUBSPACES WITH SPECIFIED EIGENVALUES 18 8.2 PERIODIC MATRIX EQUATIONS IN
CACSD 19 REFERENCES 22 XI XLL CONTENTS PARALLELIZATION OF LINEAR ALGEBRA
ALGORITHMS USING PARSOL LIBRARY OF MATHEMATICAL OBJECTS 25 ALEXANDER
JAKUSEV, RAIMONDAS CIEGIS, INGA LAUKAITYTE, AND VYACHESLAV TROFIMOV 1
INTRODUCTION 25 2 THE PRINCIPLES AND IMPLEMENTATION DETAILS OF PARSOL
LIBRARY 27 2.1 MAIN CLASSES OF PARSOL 27 2.2 IMPLEMENTATION OF PARSOL 29
3 PARALLEL ALGORITHM FOR SIMULATION OF COUNTER-PROPAGATING LASER BEAMS
29 3.1 INVARIANTS OF THE SOLUTION 30 3.2 FINITE DIFFERENCE SCHEME 31 3.3
PARALLEL ALGORITHM 33 3.4 RESULTS OF COMPUTATIONAL EXPERIMENTS 34 4
CONCLUSIONS 34 REFERENCES 35 THE DEVELOPMENT OF AN OBJECT-ORIENTED
PARALLEL BLOCK PRECONDITIONING FRAMEWORK 37 RICHARD L. MUDDLE, JONATHAN
W. BOYLE, MILAN D. MIHAJLOVIC, AND MATTHIAS HEIL 1 INTRODUCTION 37 2
BLOCK PRECONDITIONING 39 3 THE PERFORMANCE OF THE BLOCK PRECONDITIONING
FRAMEWORK 40 3.1 REFERENCE PROBLEM : 2D POISSON 40 3.2 NON-LINEAR
ELASTICITY 41 3.3 FLUID MECHANICS 42 3.4 FLUID-STRUCTURE INTERACTION 44
4 CONCLUSIONS 45 REFERENCES 45 A SPARSE LINEAR SYSTEM SOLVER USED IN A
DISTRIBUTED AND HETEROGENOUS GRID COMPUTING ENVIRONMENT 47 CHRISTOPHE
DENIS, RAPHAEL COUTURIER, AND FABIENNE JEZEQUEL 1 INTRODUCTION 47 2 THE
PARALLEL LINEAR MULTISPLITTING METHOD USED IN THE GREMLINS SOLVER 48 3
LOAD BALANCING OF THE DIRECT MULTISPLITTING METHOD 50 4 EXPERIMENTAL
RESULTS 51 4.1 EXPERIMENTS WITH A MATRIX ISSUED FROM AN
ADVECTION-DIFFUSION MODEL 51 4.2 RESULTS OF THE LOAD BALANCING 52 5
CONCLUSIONS AND FUTURE WORK 55 REFERENCES 56 CONTENTS XIII PARALLEL
DIAGONALIZATION PERFORMANCE ON HIGH-PERFORMANCE COMPUTERS . 57 ANDREW G.
SUNDERLAND 1 INTRODUCTION 57 2 PARALLEL DIAGONALIZATION METHODS 58 2.1
EQUATIONS FOR MATRIX DIAGONALIZATIONS IN PRMAT 58 2.2 EQUATIONS FOR
MATRIX DIAGONALIZATIONS IN CRYSTAL .... 58 2.3 SYMMETRIE EIGENSOLVER
METHODS 59 2.4 EIGENSOLVER PARALLEL LIBRARY ROUTINES 60 3 TESTING
ENVIRONMENT 60 4 RESULTS 61 5 CONCLUSIONS 65 REFERENCES 66 PART II
PARALLEL OPTIMIZATION PARALLEL GLOBAL OPTIMIZATION IN MULTIDIMENSIONAL
SCALING 69 JULIUS ZILINSKAS 1 INTRODUCTION 69 2 GLOBAL OPTIMIZATION 70 3
MULTIDIMENSIONAL SCALING 72 4 MULTIDIMENSIONAL SCALING WITH CITY-BLOCK
DISTANCES 75 5 PARALLEL ALGORITHMS FOR MULTIDIMENSIONAL SCALING 77 6
CONCLUSIONS 81 REFERENCES 81 HIGH-PERFORMANCE PARALLEL SUPPORT VECTOR
MACHINE TRAINING 83 KRISTIAN WOODSEND AND JACEK GONDZIO 1 INTRODUCTION
83 2 INTERIOR POINT METHODS 85 3 SUPPORT VECTOR MACHINES 86 3.1 BINARY
CLASSIFICATION 86 3.2 LINEAR SVM 86 3.3 NON-LINEAR SVM 87 4 PARALLEL
PARTIAL CHOLESKY DECOMPOSITION 88 5 IMPLEMENTING THE QP FOR PARALLEL
COMPUTATION 89 5.1 LINEAR ALGEBRA OPERATIONS 90 5.2 PERFORMANCE 90 6
CONCLUSIONS 92 REFERENCES 92 PARALLEL BRANCH AND BOUND ALGORITHM WITH
COMBINATION OF LIPSCHITZ BOUNDS OVER MULTIDIMENSIONAL SIMPLICES FOR
MULTICORE COMPUTERS 93 REMIGIJUS PAULAVICIUS AND JULIUS ZILINSKAS 1
INTRODUCTION 93 2 PARALLEL BRANCH AND BOUND WITH SIMPLICIAL PARTITIONS
94 3 RESULTS OF EXPERIMENTS 96 XIV CONTENTS 4 CONCLUSIONS 100 REFERENCES
102 EXPERIMENTAL INVESTIGATION OF LOCAL SEARCHES FOR OPTIMIZATION OF
GRILLAGE-TYPE FOUNDATIONS 103 SERGEJUS IVANIKOVAS, ERNESTAS FILATOVAS,
AND JULIUS ZILINSKAS 1 INTRODUCTION 103 2 OPTIMIZATION OF GRILLAGE-TYPE
FOUNDATIONS 104 3 METHODS FOR LOCAL OPTIMIZATION OF GRILLAGE-TYPE
FOUNDATIONS ... 104 4 EXPERIMENTAL RESEARCH 105 5 CONCLUSIONS 111
REFERENCES 112 PART III MANAGEMENT OF PARALLEL PROGRAMMING MODELS AND
DATA COMPARISON OF THE UK NATIONAL SUPERCOMPUTER SERVICES: HPCX AND
HECTOR 115 DAVID HENTY AND ALAN GRAY 1 INTRODUCTION 115 2 SYSTEM
OVERVIEW 116 2.1 HPCX 116 2.2 HECTOR 118 3 SYSTEM COMPARISON 118 3.1
PROCESSORS 119 3.2 INTERCONNECT 119 4 APPLICATIONS PERFORMANCE 120 4.1
PDNS3D 121 4.2 NAMD 122 5 CONCLUSIONS 123 REFERENCES 123 DL.POLY.3 I/O:
ANALYSIS, ALTERNATIVES, AND FUTURE STRATEGIES 125 ILIAN T. TODOROV, IAN
J. BUSH, AND ANDREW R. PORTER 1 INTRODUCTION 125 2 I/O IN DL_POLY_3 126
2.1 SERIAL DIRECT ACCESS I/O 126 2.2 PARALLEL DIRECT ACCESS I/O 127 2.3
MPI-I/O 127 2.4 SERIAL I/O USING NETCDF 128 3 RESULTS AND DISCUSSION 128
4 CONCLUSIONS 131 REFERENCES 132 MIXED MODE PROGRAMMING ON HPCX 133
MICHA! PIOTROWSKI 1 INTRODUCTION 133 2 BENCHMARK CODES 134 CONTENTS XV 3
MIXED MODE 135 4 HARDWARE 137 5 EXPERIMENTAL RESULTS 139 6 CONCLUSIONS
142 REFERENCES 143 A STRUCTURE CONVEYING PARALLELIZABLE MODELING
LANGUAGE FOR MATHEMATICAL PROGRAMMING 145 ANDREAS GROTHEY, JONATHAN
HOGG, KRISTIAN WOODSEND, MARCO COLOMBO, AND JACEK GONDZIO 1 INTRODUCTION
145 2 BACKGROUND 146 2.1 MATHEMATICAL PROGRAMMING 146 2.2 MODELING
LANGUAGES 147 3 SOLUTION APPROACHES TO STRUCTURED PROBLEMS . 149 3.1
DECOMPOSITION 149 3.2 INTERIOR POINT METHODS 149 4 STRUCTURE CONVEYING
MODELING LANGUAGES 150 4.1 OTHER STRUCTURED MODELING APPROACHES 151 4.2
DESIGN 151 4.3 IMPLEMENTATION 153 5 CONCLUSIONS 155 REFERENCES 155
COMPUTATIONAL REQUIREMENTS FOR PULSAR SEARCHES WITH THE SQUARE KILOMETER
ARRAY 157 ROY SMITS, MICHAEL KRAMER, BEN STAPPERS, AND ANDREW FAULKNER 1
INTRODUCTION 157 2 SKA CONFIGURATION 158 3 COMPUTATIONAL REQUIREMENTS
159 3.1 BEAM FORMING 159 3.2 DATA ANALYSIS 161 4 CONCLUSIONS 164
REFERENCES 1 64 PART IV PARALLEL SCIENTIFIC COMPUTING IN INDUSTRIAL
APPLICATIONS PARALLEL MULTIBLOCK MULTIGRID ALGORITHMS FOR POROELASTIC
MODELS 169 RAIMONDAS CIEGIS, FRANCISCO GASPAR, AND CARMEN RODRIGO 1
INTRODUCTION 169 2 MATHEMATICAL MODEL AND STABILIZED DIFFERENCE SCHEME
171 3 MULTIGRID METHODS 172 3.1 BOX RELAXATION 173 4 NUMERICAL
EXPERIMENTS 174 5 PARALLEL MULTIGRID 176 XVI CONTENTS 5.1 CODE
IMPLEMENTATION 176 5.2 CRITICAL ISSUES REGARDING PARALLEL MG 177 6
CONCLUSIONS 179 REFERENCES 179 A PARALLEL SOLVER FOR THE 3D SIMULATION
OF FLOWS THROUGH OIL FILTERS 181 VADIMAS STARIKOVICIUS, RAIMONDAS
CIEGIS, OLEG HIEV, AND ZHARA LAKDAWALA 1 INTRODUCTION 181 2 MATHEMATICAL
MODEL AND DISCRETIZATION 182 2.1 TIME DISCRETIZATION 183 2.2 FINITE
VOLUME DISCRETIZATION IN SPACE 184 2.3 SUBGRID APPROACH 185 3 PARALLEL
ALGORITHMS 185 3.1 DD PARALLEL ALGORITHM 185 3.2 OPENMP PARALLEL
ALGORITHM 189 4 CONCLUSIONS 190 REFERENCES 1 90 HIGH-PERFORMANCE
COMPUTING IN JET AERODYNAMICS 193 SIMON EASTWOOD, PAUL TUCKER, AND HAO
XIA 1 INTRODUCTION 193 2 NUMERICAL BACKGROUND 195 2.1 HYDRA AND FLUXP
195 2.2 BOUNDARY AND INITIAL CONDITIONS 196 2.3 FFOWCS WILLIAMS HAWKINGS
SURFACE 196 3 COMPUTING FACILITIES 197 4 CODE PARALLELIZATION AND
SCALABILITY 198 5 AXISYMMETRIC JET RESULTS 199 5.1 PROBLEM SET UP AND
MESH 199 5.2 RESULTS 200 6 COMPLEX GEOMETRIES 200 6.1 MESH AND INITIAL
CONDITIONS 200 6.2 RESULTS 203 7 CONCLUSIONS 205 REFERENCES 205 PARALLEL
NUMERICAL SOLVER FOR THE SIMULATION OF THE HEAT CONDUCTION IN ELECTRICA!
CABLES 207 GERDA JANKEVICIUETE AND RAIMONDAS CIEGIS 1 INTRODUCTION 207 2
THE MODEL OF HEAT CONDUCTION IN ELECTRICAL CABLES AND DISCRETIZATION 208
3 PARALLEL ALGORITHM 211 4 CONCLUSIONS 212 REFERENCES 212 R CONTENTS XVN
ORTHOGONALIZATION PROCEDURE FOR ANTISYMMETRIZATION OF J-SHELL STATES ...
213 ALGIRDAS DEVEIKIS 1 INTRODUCTION 213 2 ANTISYMMETRIZATION OF
IDENTICAL FERMIONS STATES 214 3 CALCULATIONS AND RESULTS 217 4
CONCLUSIONS 220 REFERENCES 221 PARALLEL DIRECT NUMERICAL SIMULATION OF
AN ANNULAR GAS-LIQUID TWO-PHASE JET WITH SWIRL 223 GEORGE A. SIAMAS, XI
JIANG, AND LUIZ C. WROBEL 1 INTRODUCTION 223 2 GOVERNING EQUATIONS 224 3
COMPUTATIONAL METHODS 226 3.1 TIME ADVANCEMENT, DISCRETIZATION, AND
PARALLELIZATION ..226 3.2 BOUNDARY AND INITIAL CONDITIONS 227 4 RESULTS
AND DISCUSSION 229 4.1 INSTANTANEOUS FLOW DATA 229 4.2 TIME-AVERAGED
DATA, VELOCITY HISTORIES, AND ENERGY SPECTRA 232 5 CONCLUSIONS 234
REFERENCES 235 PARALLEL NUMERICAL ALGORITHM FOR THE TRAVELING WAVE MODEL
237 INGA LAUKAITYTE, RAIMONDAS CIEGIS, MARK LICHTNER, AND MINDAUGAS
RADZIUNAS 1 INTRODUCTION 237 2 MATHEMATICAL MODEL 240 3 FINITE
DIFFERENCE SCHEME 242 3.1 DISCRETE TRANSPORT EQUATIONS FOR OPTICAL
FIELDS 243 3.2 DISCRETE EQUATIONS FOR POLARIZATION FUNCTIONS 244 3.3
DISCRETE EQUATIONS FOR THE CARRIER DENSITY FUNCTION 244 3.4 LINEARIZED
NUMERICAL ALGORITHM 244 4 PARALLELIZATION OF THE ALGORITHM 246 4.1
PARALLEL ALGORITHM 246 4.2 SCALABILITY ANALYSIS 247 4.3 COMPUTATIONAL
EXPERIMENTS 248 5 CONCLUSIONS 250 REFERENCES 250 PARALLEL ALGORITHM FOR
CELL DYNAMICS SIMULATION OF SOFT NANO-STRUCTURED MATTER 253 XIAOHU GUO,
MARCO PINNA, AND ANDREI V. ZVELINDOVSKY 1 INTRODUCTION 253 2 THE CELL
DYNAMICS SIMULATION 254 3 PARALLEL ALGORITHM OF CDS METHOD 256 WILL
CONTENTS 3.1 THE SPATIAL DECOMPOSITION METHOD 256 3.2 PARALLEL PLATFORM
AND PERFORMANCE TUNING 258 3.3 PERFORMANCE ANALYSIS AND RESULTS 259 4
CONCLUSIONS 262 REFERENCES 262 DOCKING AND MOLECULAR DYNAMICS SIMULATION
OF COMPLEXES OF HIGH AND LOW REACTIVE SUBSTRATES WITH PEROXIDASES 263
ZILVINAS DAPKUENAS AND JUOZAS KULYS 1 INTRODUCTION 263 2 EXPERIMENTAL 265
2.1 AB INITIO MOLECULE GEOMETRY CALCULATIONS 265 2.2 SUBSTRATES DOCKING
IN ACTIVE SITE OF ENZYME 265 2.3 MOLECULAR DYNAMICS OF SUBSTRATE-ENZYME
COMPLEXES .. 266 3 RESULTS AND DISCUSSION 267 3.1 SUBSTRATE DOCKING
MODELING 267 3.2 MOLECULAR DYNAMICS SIMULATION 268 4 CONCLUSIONS 270
REFERENCES 270 INDEX 273
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| series | Springer optimization and its applications |
| series2 | Springer optimization and its applications |
| spelling | Parallel scientific computing and optimization advances and applications by Raimondas Čiegis ... New York, NY Springer 2009 XXIII, 274 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Springer optimization and its applications 27 Datenverarbeitung Mathematik Electronic data processing Matrix theory Numerical analysis Operations research Mathematics Glättung (DE-588)4157404-7 gnd rswk-swf Kurve (DE-588)4033824-1 gnd rswk-swf (DE-588)1071861417 Konferenzschrift 1979 Heidelberg gnd-content Kurve (DE-588)4033824-1 s Glättung (DE-588)4157404-7 s DE-604 Čiegis, Raimondas edt Erscheint auch als Online-Ausgabe Parallel Scientific Computing and Optimization Springer optimization and its applications 27 (DE-604)BV021746093 27 DE-576;springer image/jpeg http://swbplus.bsz-bw.de/bsz302465898cov.htm 20090603052101 Cover DE-576;springer application/pdf http://swbplus.bsz-bw.de/bsz302465898kap.htm 20090623101204 Kapitel 2 DE-576;springer application/pdf http://swbplus.bsz-bw.de/bsz302465898vor.htm 20090623095726 Vorwort 1 GBV Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=020307048&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Parallel scientific computing and optimization advances and applications Springer optimization and its applications Datenverarbeitung Mathematik Electronic data processing Matrix theory Numerical analysis Operations research Mathematics Glättung (DE-588)4157404-7 gnd Kurve (DE-588)4033824-1 gnd |
| subject_GND | (DE-588)4157404-7 (DE-588)4033824-1 (DE-588)1071861417 |
| title | Parallel scientific computing and optimization advances and applications |
| title_auth | Parallel scientific computing and optimization advances and applications |
| title_exact_search | Parallel scientific computing and optimization advances and applications |
| title_full | Parallel scientific computing and optimization advances and applications by Raimondas Čiegis ... |
| title_fullStr | Parallel scientific computing and optimization advances and applications by Raimondas Čiegis ... |
| title_full_unstemmed | Parallel scientific computing and optimization advances and applications by Raimondas Čiegis ... |
| title_short | Parallel scientific computing and optimization |
| title_sort | parallel scientific computing and optimization advances and applications |
| title_sub | advances and applications |
| topic | Datenverarbeitung Mathematik Electronic data processing Matrix theory Numerical analysis Operations research Mathematics Glättung (DE-588)4157404-7 gnd Kurve (DE-588)4033824-1 gnd |
| topic_facet | Datenverarbeitung Mathematik Electronic data processing Matrix theory Numerical analysis Operations research Mathematics Glättung Kurve Konferenzschrift 1979 Heidelberg |
| url | http://swbplus.bsz-bw.de/bsz302465898cov.htm http://swbplus.bsz-bw.de/bsz302465898kap.htm http://swbplus.bsz-bw.de/bsz302465898vor.htm http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=020307048&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV021746093 |
| work_keys_str_mv | AT ciegisraimondas parallelscientificcomputingandoptimizationadvancesandapplications |