Dissipative particle dynamics: simulation of microfluidic systems with fluid particle methods on high performance computers
Saved in:
| Main Author: | |
|---|---|
| Format: | Thesis Book |
| Language: | English |
| Published: |
Aachen
Shaker
2009
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| Series: | Microfluidics & nanofluidics
5 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Physical Description: | XX, 186 S. Ill., graph. Darst. |
| ISBN: | 9783832283056 |
Staff View
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| 245 | 1 | 0 | |a Dissipative particle dynamics |b simulation of microfluidic systems with fluid particle methods on high performance computers |c Thomas Steiner |
| 264 | 1 | |a Aachen |b Shaker |c 2009 | |
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Record in the Search Index
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| adam_text | CONTENTS SUMMARY V ZUSAMMENFASSUNG VII PUBLICATIONS XI GLOSSARY XV 1
INTRODUCTION 1 1.1 SIMULATIONS OF COMPLEX MICROFLUIDIC PHENOMENA IN LIFE
SCIENCE 1 1.2 TOP-DOWN VERSUS BOTTOM-UP APPROACHES IN FP SIMULATIONS . 4
1.3 DPD AS A FRAMEWORK FOR MESOSCALE SIMULATIONS 11 1.4 AIM AND
STRUCTURE OF THIS WORK 13 PART I: FLUID PARTICLE METHODS FOR
MICROFLUIDIC APPLICATIONS 15 2 THEORY AND FOUNDATIONS OF FLUID PARTICLE
APPROACHES 17 2.1 EQUATION OF MOTION, THERMOSTATS AND EQUATION OF STATE
. . . . 17 2.2 ADDITIONAL DEGREES OF FREEDOM 19 2.3 USER DEFINED
EQUATION OF STATE - MULTI-BODY DPD 21 2.4 COMPOUND OBJECTS WITH
QUATERNION DYNAMICS 23 2.5 INTEGRATING THE EQUATION OF MOTION FOR FLUID
PARTICLES AND OBJECTS 28 3 EXTRACTING FLUID PROPERTIES AND SETTING
BOUNDARY CONDITIONS 35 3.1 MEASURING TRANSPORT PARAMETERS: VISCOSITY AS
AN EXAMPLE . . 35 3.2 PRESSURE BOUNDARY CONDITIONS 43 3.3 VALIDATING THE
REFLECTING BOUNDARY AND GRAVITATIONAL METHOD 46 3.4 HYDRODYNAMIC
BEHAVIOR IN DPD 53 4 BEAD AGGREGATION IN MICROFLUIDIC STRUCTURES 57 4.1
FROM DESIGN TO SIMULATION 57 4.2 ASSESSMENT OF THE SIMULATION 62 XIX
BIBLIOGRAFISCHE INFORMATIONEN HTTP://D-NB.INFO/995271100 DIGITALISIERT
DURCH CONTENTS 4.3 FLOW FIELD IN CONFINED GEOMETRIES 66 4.4 THE
HYDRODYNAMIC DRAG ON A BEAD 70 4.5 INFLUENCE OF GEOMETRY ON FLOW FIELDS
AND BEAD AGGREGATION . 72 4.6 BEAD AGGREGATION: SIMULATION VERSUS
EXPERIMENT 74 PART II: PARALLELIZATION FOR HIGH-PERFORMANCE COMPUTING 81
5 CUSTOMIZING THE SIMULATION APPROACH 83 5.1 PARALLELIZATION WITH DOMAIN
DECOMPOSITION 83 5.2 MULTI-PROCESSOR PROCEDURES FOR POINT PARTICLES 89
5.3 ASSIGN MULTIPLE MATERIAL PROPERTIES TO SPECIES 93 5.4 EFFICIENT
HANDLING OF OBJECTS IN SIMULATIONS 102 5.5 DISTRIBUTED MEMORY VERSUS
SHARED MEMORY PARALLELIZATION . . 105 6 PERFORMANCE OPTIMIZATION OF THE
SIMULATION CODE 107 6.1 CELL INDEXING ARRAYS AND VERLET SKINS 107 6.2
DYNAMIC LOAD BALANCING PROCEDURES 110 6.3 PERFORMANCE OF DIFFERENT LOAD
BALANCING SCHEINES 114 6.4 PERFORMANCE ACROSS DIFFERENT COMPUTER
PLATFORMS 118 7 CONCLUSION 125 BIBLIOGRAPHY 129 APPENDIX 147 A STRUCTURE
OF THE SIMULATION CODE 149 B SUBROUTINES OF THE MAIN PROGRAM 157 C
QUATERNION SUBROUTINES 173 D LOAD BALANCING SUBROUTINES 175 E
MULTI-SPECIES IDENTIFICATION SUBROUTINES 183 ACKNOWLEDGMENTS 185 XX
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| any_adam_object | 1 |
| author | Steiner, Thomas |
| author_facet | Steiner, Thomas |
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| ctrlnum | (OCoLC)436279719 (DE-599)DNB995271100 |
| dewey-full | 620.1060113 |
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| dewey-search | 620.1060113 |
| dewey-sort | 3620.1060113 |
| dewey-tens | 620 - Engineering and allied operations |
| discipline | Maschinenbau / Maschinenwesen |
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| illustrated | Illustrated |
| indexdate | 2024-07-09T22:04:16Z |
| institution | BVB |
| isbn | 9783832283056 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-018635137 |
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| physical | XX, 186 S. Ill., graph. Darst. |
| publishDate | 2009 |
| publishDateSearch | 2009 |
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| publisher | Shaker |
| record_format | marc |
| series | Microfluidics & nanofluidics |
| series2 | Microfluidics & nanofluidics |
| spelling | Steiner, Thomas Verfasser aut Dissipative particle dynamics simulation of microfluidic systems with fluid particle methods on high performance computers Thomas Steiner Aachen Shaker 2009 XX, 186 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Microfluidics & nanofluidics 5 Zugl.: Freiburg (Breisgau), Univ., Diss., 2009 Dissipative Teilchendynamik (DE-588)7611425-9 gnd rswk-swf Mikrofluidik (DE-588)4803438-1 gnd rswk-swf (DE-588)4113937-9 Hochschulschrift gnd-content Mikrofluidik (DE-588)4803438-1 s Dissipative Teilchendynamik (DE-588)7611425-9 s DE-604 Microfluidics & nanofluidics 5 (DE-604)BV035421386 5 DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=018635137&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Steiner, Thomas Dissipative particle dynamics simulation of microfluidic systems with fluid particle methods on high performance computers Microfluidics & nanofluidics Dissipative Teilchendynamik (DE-588)7611425-9 gnd Mikrofluidik (DE-588)4803438-1 gnd |
| subject_GND | (DE-588)7611425-9 (DE-588)4803438-1 (DE-588)4113937-9 |
| title | Dissipative particle dynamics simulation of microfluidic systems with fluid particle methods on high performance computers |
| title_auth | Dissipative particle dynamics simulation of microfluidic systems with fluid particle methods on high performance computers |
| title_exact_search | Dissipative particle dynamics simulation of microfluidic systems with fluid particle methods on high performance computers |
| title_full | Dissipative particle dynamics simulation of microfluidic systems with fluid particle methods on high performance computers Thomas Steiner |
| title_fullStr | Dissipative particle dynamics simulation of microfluidic systems with fluid particle methods on high performance computers Thomas Steiner |
| title_full_unstemmed | Dissipative particle dynamics simulation of microfluidic systems with fluid particle methods on high performance computers Thomas Steiner |
| title_short | Dissipative particle dynamics |
| title_sort | dissipative particle dynamics simulation of microfluidic systems with fluid particle methods on high performance computers |
| title_sub | simulation of microfluidic systems with fluid particle methods on high performance computers |
| topic | Dissipative Teilchendynamik (DE-588)7611425-9 gnd Mikrofluidik (DE-588)4803438-1 gnd |
| topic_facet | Dissipative Teilchendynamik Mikrofluidik Hochschulschrift |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=018635137&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV035421386 |
| work_keys_str_mv | AT steinerthomas dissipativeparticledynamicssimulationofmicrofluidicsystemswithfluidparticlemethodsonhighperformancecomputers |