Protein networks and pathway analysis:
Gespeichert in:
| 1. Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Totowa, NJ [u.a.]
Humana Press
2009
|
| Schriftenreihe: | Methods in molecular biology
563 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XIII, 410 S. Ill., graph. Darst. |
| ISBN: | 9781607611745 |
Internformat
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Datensatz im Suchindex
| _version_ | 1804139921669095424 |
|---|---|
| adam_text | Titel: Protein networks and pathway analysis
Autor: Nikolsky, Yuri
Jahr: 2009
Contents
Preface v
Contributors ix
Section I: Interactions
1. Mining Protein-Protein Interactions from Published Literature Using
Linguamatics I2E 3
Judith Bandy, David Milward, and Sarah McQuay
2. Relative Avidity, Specificity, and Sensitivity of Transcription Factor-DNA Binding
in Genome-Scale Experiments 15
Vladimir A. Kuznetsov
3. Curation of Inhibitor-Target Data: Process and Impact on Pathway Analysis 51
Sreenivas Devidas
4. Profiling Protein Interaction Networks with Functional
Protein Microarrays 63
Dawn R. Mattoon and Barry Schweitzer
5. Manual Annotation of Protein Interactions 75
Svetlana Bureeva, Svetlana Zvereva, Valentin Romanov, and
Tatiana Serebryiskaya
Section II: Analysis
6. Gene Set Enrichment Analysis 99
Charles A. Tilford and Nathan O. Siemers
7 . PANTHER Pathway. An Ontology-Based Pathway Database Coupled with Data
Analysis Tools 123
Huaiyu Mi and Paul Thomas
8. Prioritizing Genes for Pathway Impact Using Network Analysis 141
Aaron N. Chang
9. Discovering Biological Networks from Diverse Functional Genomic Data 157
Chad L. Myers, Camelia Chiriac, and Olga G. Troyanskaya
10. Functional Analysis of OMICs Data and Small Molecule Compounds in an
Integrated Knowledge-Based Platform 177
Yuri Nikolsky, Eugene Kirillov, Roman Zuev, Eugene Rakhmatulin, and
Tatiana Nikolskaya
11. Kinetic Modeling as a Tool to Integrate Multilevel Dynamic
Experimental Data 197
Ekaterina Mogilevskaya, Natalia Bagrova, Tatiana Plyusnina, Nail
Gizzatkulov, Eugeniy Metelkin, Ekaterina Goryacheva, Sergey Smirnov,
Turiy Kosinsky, Aleksander Dorodnov, Kirill Peskov, Tatiana Karelina,
Igor Goryanin, and Oleg Detnin
IX
x Contents
12. Cytoscape: A Community-Based Framework for Network Modeling 219
Sarah Killcoyne, Gregory W. Carter, Jennifer Smith, and John Boyle
13. Semantic Data Integration and Knowledge Management to Represent Biological
Network Associations 241
Sascha Losko and Klaus Heumann
14. Solutions for Complex, Multi Data Type and Multi Tool Analysis: Principles and
Applications of Using Workflow and Pipelining Methods 259
Robin E. J. Munro and Tike Guo
Section III: Applications
15. High-Throughput siRNA Screening as a Method of Perturbation of Biological
Systems and Identification of Targeted Pathways Coupled with Compound
Screening 275
Jeff Kiefer, Hongwei H. Tin, Qiang Q. Que, and Spyro Mousses
16. Pathway and Network Analysis with High-Density Allelic Association Data 289
Alt Torkamani and Nicholas J. Schork
17. miRNAs: From Biogenesis to Networks 303
Giuseppe Russo and Antonio Giordano
18. MetaMiner (CF): A Disease-Oriented Bioinfbrmatics Analysis
Environment 353
Jerry M. Wright, Yuri Nikolsky, Tatiana Serebryiskaya, and Diana R. Wetmore
19. Translational Research and Biomedical Informatics 369
Michael Liebman
20. ArrayTrack: An FDA and Public Genomic Tool 379
Hong Fang, Stephen C. Harris, Zhenjiang Su, Minjun Chen, Feng Qian,
Leming Shi, Roger Perkins, and Weida Tong
Index 399
|
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| discipline | Biologie Chemie |
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| series | Methods in molecular biology |
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| spelling | Nikolsky, Yuri Verfasser aut Protein networks and pathway analysis ed. by Yuri Nikolsky ... Totowa, NJ [u.a.] Humana Press 2009 XIII, 410 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 563 Springer protocols Interactions protéine-protéine ram Méthodes analyse interactions protéines-protéines Chemische Analyse (DE-588)4009840-0 gnd rswk-swf Protein-Protein-Wechselwirkung (DE-588)4745193-2 gnd rswk-swf Proteine (DE-588)4076388-2 gnd rswk-swf Proteindesign (DE-588)4346801-9 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Proteine (DE-588)4076388-2 s Protein-Protein-Wechselwirkung (DE-588)4745193-2 s DE-604 Proteindesign (DE-588)4346801-9 s Chemische Analyse (DE-588)4009840-0 s b DE-604 Methods in molecular biology 563 (DE-604)BV035362695 563 HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=017990820&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Nikolsky, Yuri Protein networks and pathway analysis Methods in molecular biology Interactions protéine-protéine ram Méthodes analyse interactions protéines-protéines Chemische Analyse (DE-588)4009840-0 gnd Protein-Protein-Wechselwirkung (DE-588)4745193-2 gnd Proteine (DE-588)4076388-2 gnd Proteindesign (DE-588)4346801-9 gnd |
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| title | Protein networks and pathway analysis |
| title_auth | Protein networks and pathway analysis |
| title_exact_search | Protein networks and pathway analysis |
| title_full | Protein networks and pathway analysis ed. by Yuri Nikolsky ... |
| title_fullStr | Protein networks and pathway analysis ed. by Yuri Nikolsky ... |
| title_full_unstemmed | Protein networks and pathway analysis ed. by Yuri Nikolsky ... |
| title_short | Protein networks and pathway analysis |
| title_sort | protein networks and pathway analysis |
| topic | Interactions protéine-protéine ram Méthodes analyse interactions protéines-protéines Chemische Analyse (DE-588)4009840-0 gnd Protein-Protein-Wechselwirkung (DE-588)4745193-2 gnd Proteine (DE-588)4076388-2 gnd Proteindesign (DE-588)4346801-9 gnd |
| topic_facet | Interactions protéine-protéine Méthodes analyse interactions protéines-protéines Chemische Analyse Protein-Protein-Wechselwirkung Proteine Proteindesign Aufsatzsammlung |
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