Pacific Symposium on Biocomputing 2006: Maui, Hawaii, 3 - 7 January 2006
Gespeichert in:
| Format: | Tagungsbericht Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Singapore [u.a.]
World Scientific
2006
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| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | Literaturangaben |
| Beschreibung: | XVII, 607 S. Ill., graph. Darst. |
| ISBN: | 9812564632 |
Internformat
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| 245 | 1 | 0 | |a Pacific Symposium on Biocomputing 2006 |b Maui, Hawaii, 3 - 7 January 2006 |c ed. by: Russ B. Altman ... |
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| adam_text | IMAGE 1
P A C I F IC S Y M P O S I UM ON
BIOCOMPUTING 2006
MAUI, HAWAII 3-7 JANUARY 2006 EDITED BY
RUSS B. ALTMAN STANFORD UNIVERSITY, USA
A. KEITH DUNKER
INDIANA UNIVERSITY, USA
LAWRENCE HUNTER UNIVERSITY OF COLORADO HEALTH SCIENCES CENTER, USA
TIFFANY MURRAY
STANFORD UNIVERSITY, USA
TERI E. KLEIN STANFORD UNIVERSITY, USA
TECHNISCHE
INFORMATIONSBIBLIOTHEK
UNIVERSITATSBIBLIOTHEK HANNOVER
»WORLD SCIENTIFIC
NEW JERSEY * LONDON * SINGAPORE * BEIJING * SHANGHAI * HONG KONG *
TAIPEI * CHENNAI
IMAGE 2
CONTENTS
PREFACE V
LINKING BIOMEDICAL INFORMATION THROUGH TEXT MINING
SESSION INTRODUCTION 1
K. BRETONNEL COHEN, OLIVIER BODENREIDER, AND LYNETTE HIRSCHMAN
EXTRACTION OF GENE-DISEASE RELATIONS FROM MEDLINE USING DOMAIN 4
DICTIONARIES AND MACHINE LEARNING HONG-WOO CHUN, YOSHIMASA TSURUOKA,
JIN-DONG KIM, RIE SHIBA, NAOKI NAGATA, TERUYOSHI HISHIKI,
AND JUN ICHI TSUJII
SIGNIFICANTLY IMPROVED PREDICTION OF SUBCELLULAR LOCALIZATION BY 16
INTEGRATING TEXT AND PROTEIN SEQUENCE DATA ANNETTE HOGLUND, TORSTEN
BLUM, SCOTT BRADY, PIERRE DONNES, JOHN SAN MIGUEL, MATTHEW ROCHEFORD,
OLIVER KOHLBACHER, AND HAGIT SHATKAY
EVALUATION OF LEXICAL METHODS FOR DETECTING RELATIONSHIPS BETWEEN 28
CONCEPTS FROM MULTIPLE ONTOLOGIES HELEN L. JOHNSON, K. BRETONNEL COHEN,
WILLIAM A. BAUMGARTNER JR., ZHIYONG LIT, MICHAEL BADA,
TODD KESTER, H UNMIN KIM, AND LAWRENCE HUNTER
AUTOMATICALLY GENERATING GENE SUMMARIES FROM BIOMEDICAL LITERATURE 40 XU
LING, JING JIANG, XIN HE, QIAOZHU MEI, CHENGXIANG ZHAI, AND BRUCE SCHATZ
FINDING GENERIFS VIA GENE ONTOLOGY ANNOTATIONS 52
ZHIVONG LU, K. BRETONNEL COHEN, AND LAWRENCE HUNTER
PHENOGO: ASSIGNING PHENOTYPIC CONTEXT TO GENE ONTOLOGY 64 ANNOTATIONS
WITH NATURAL LANGUAGE PROCESSING YVES LUSSIER, TARA BORLAWSKY, DANIEL
RAPPAPORT, YANG LIU, AND CAROL FRIEDMAN
IMAGE 3
LARGE-SCALE TESTING OF BIBLIOME INFORMATICS USING PFAM 76
PROTEIN FAMILIES ANA G. MAGUITMAN, ANDREAS RECHTSTEINER, KARIN VERSPOOR,
CHARLIE E. STRAUSS, AND LUIS M. ROCHA
PREDICTING GENE FUNCTIONS FROM TEXT USING A CROSS-SPECIES APPROACH 88
EMILIA STOICA AND MARTI HEARST
BOOTSTRAPPING THE RECOGNITION AND ANAPHORIC LINKING OF NAMED 100
ENTITIES IN DROSOPHILA ARTICLES ANDREAS VLACHOS, CAROLINE GASPERIN, IAN
LEWIN, AND TED BRISCOE
SEMANTIC WEBS FOR LIFE SCIENCES
SESSION INTRODUCTION 112
ROBERT STEVENS, OLIVIER BODENREIDER, AND YVES A. LUSSIER
SELECTING BIOLOGICAL DATA SOURCES AND TOOLS WITH XPR, A PATH 116
LANGUAGE FOR RDF SARAH COHEN-BOULAKIA, CHRISTINE FROIDEVAUX, AND
EMMANUEL PIETRIGA
FAST, CHEAP AND OUT OF CONTROL: A ZERO CURATION MODEL FOR 128
ONTOLOGY DEVELOPMENT BENJAMIN M. GOOD, ERIN M. TRANFIELD, POH C. TAN,
MARLENE SHEHATA, GURPREET K. SINGHERA, JOHN GOSSELINK, ELENA B. OKON,
AND MARK D. WILKINSON
PUTTING SEMANTICS INTO THE SEMANTIC WEB: HOW WELL CAN IT 140 CAPTURE
BIOLOGY? TONI KAZIC
EVENT ONTOLOGY: A PATHWAY-CENTRIC ONTOLOGY FOR BIOLOGICAL PROCESSES 152
TATSUYA KUSHIDA, TOSHIHISA TAKAGI, AND KEN ICHIRO FUKUDA
DISCOVERING BIOMEDICAL RELATIONS UTILIZING THE WORLD-WIDE WEB 164
SOUGATA MUKHERJEA AND SAURAV SAHAY
BIODASH: A SEMANTIC WEB DASHBOARD FOR DRUG DEVELOPMENT 176 ERIC K.
NEUMANN AND DENNIS QUAN
IMAGE 4
SEMBIOSPHERE: A SEMANTIC WEB APPROACH TO RECOMMENDING 188
MICROARRAY CLUSTERING SERVICES KEVIN Y. YIP, PEISHEN QI, MARTIN SCHULTZ,
DAVID W. CHEUNG, AND KEI-HOI CHEUNG
EXPERIENCE IN REASONING WITH THE FOUNDATIONAL MODEL OF ANATOMY 200 IN
OWL DL SONGMAO ZHANG, OLIVIER BODENREIDER, AND CHRISTINE GOLBREICH
THE CHALLENGE OF PROTEOMIC DATA, FROM MOLECULAR SIGNALS TO BIOLOGICAL
NETWORKS AND DISEASE
SESSION INTRODUCTION 212
BOBBIE-JO WEBB-ROBERTSON, WILLIAM CANNON, JOSHUA ADKINS, AND DEBORAH
GRACIO
A MACHINE LEARNING APPROACH TO PREDICTING PEPTIDE 219
FRAGMENTATION SPECTRA RANDY J. ARNOLD, NARMADA JAYASANKAR, DIVYA
AGGARWAL, HAIXU TANG, AND PREDRAG RADIVOJAC
IDENTIFYING PROTEIN COMPLEXES IN HIGH-THROUGHPUT PROTEIN INTERACTION 231
SCREENS USING AN INFINITE LATENT FEATURE MODEL WEI CHU, ZOUBIN
GHAHRAMANI, ROLAND KRAUSE, AND DAVID L. WILD
HIGH-ACCURACY PEAK PICKING OF PROTEOMICS DATA USING 243
WAVELET TECHNIQUES EVA LANGE, CLEMENS GRIIPL, KNUT REINERT, OLIVER
KOHLBACHER, AND ANDREAS HILDEBRANDT
FAST DE NOVO PEPTIDE SEQUENCING AND SPECTRAL ALIGNMENT VIA 255 TREE
DECOMPOSITION CHUNMEI LIU, YINGLEI SONG, BO YAN, YING XU, AND LIMING CAI
EXPERIMENTAL DESIGN OF TIME SERIES DATA FOR LEARNING FROM 267 DYNAMIC
BAYESIAN NETWORKS DAVID PAGE AND IRENE M. ONG
IMAGE 5
FINDING DIAGNOSTIC BIOMARKERS IN PROTEOMIC SPECTRA 279
PALLAVI N. PRATAPA, EDWARD F. PATZ, JR., AND ALEXANDER J. HARTEMINK
GAUSSIAN MIXTURE MODELING OF CC-X HELIX SUBCLASSES: STRUCTURE AND 291
SEQUENCE VARIATIONS ASHISH V. TENDULKAR, BABATUNDE OGUNNAIKE, AND PRAMOD
P. WANGIKAR
AN SVM SCORER FOR MORE SENSITIVE AND RELIABLE PEPTIDE IDENTIFICATION 303
VIA TANDEM MASS SPECTROMETRY HAIPENG WANG, YAN FU, RUIXIANG SUN, SIMIN
HE, RONG ZENG, AND WEN GAO
NORMALIZATION REGARDING NON-RANDOM MISSING VALUES IN 315 HIGH-THROUGHPUT
MASS SPECTROMETRY DATA PEI WANG, HUA TANG, HEIDI ZHANG, JEFFREY
WHITEAKER, AMANDA G. PAULOVICH, AND MARTIN MCINTOSH
A POINT-PROCESS MODEL FOR RAPID IDENTIFICATION OF POST-TRANSLATIONAL 327
MODIFICATIONS BO YAN, TONG ZHOU, PENG WANG, ZHIJIE LIU, VINCENT A.
EMANUELE II, VICTOR OLMAN, AND YING XU
A NEW APPROACH FOR ALIGNMENT OF MULTIPLE PROTEINS 339
XU ZHANG AND TAMER KAHVECI
PROTEIN INTERACTIONS IN DISEASE
SESSION INTRODUCTION 351
MARICEL KANN, YANAY OFRAN, MARCO PUNTA, AND PREDRAG RADIVOJAC
DISCOVERING REGULATED NETWORKS DURING HIV-1 LATENCY 354 AND REACTIVATION
SOURAV BANDYOPADHYAY, RYAN KELLEY, AND TREY LDEKER
MINING ALZHEIMER DISEASE RELEVANT PROTEINS FROM INTEGRATED PROTEIN 367
INTERACTOME DATA JAKE YUE CHEN, CHANGYU SHEN, AND ANDREY Y. SIVACHENKO
IMAGE 6
ACCOUNTING FOR STRUCTURAL PROPERTIES AND NUCLEOTIDE CO-VARIATIONS 379
IN THE QUANTITATIVE PREDICTION OF BINDING AFFINITIES OF PROTEIN-DNA
INTERACTIONS SUMEDHA GUNEWARDENA AND ZHAOLEI ZHANG
IMPROVING COMPUTATIONAL PREDICTIONS OF CW-REGULATORY BINDING SITES 391
MARK ROBINSON, YI SUN, RENE TE BOEKHORST, PAUL KAYE, ROD ADAMS, NEIL
DAVEY, AND ALISTAIR G. RUST
STRUCT2NET: INTEGRATING STRUCTURE INTO PROTEIN-PROTEIN INTERACTION 403
PREDICTION ROHIT SINGH, JINBO XU, AND BONNIE BERGER
IDENTIFYING INTERACTION SITES IN RECALCITRANT PROTEINS: PREDICTED 415
PROTEIN AND RNA BINDING SITES IN REV PROTEINS OF HIV-1 AND EIAV AGREE
WITH EXPERIMENTAL DATA MICHAEL TERRIBILINI, JAE-HYUNG LEE, CHANGHUI YAN,
ROBERT L. JERNIGAN, SUSAN CARPENTER, VASANT HONAVAR, AND DRENA DOBBS
MODELING AND SIMULATION WITH HYBRID FUNCTIONAL PETRI NETS OF THE 427
ROLE OF INTERLEUKIN-6 IN HUMAN EARLY HAEMATOPOIESIS SYLVIE TRONCALE,
FARIZA TAHI, DAVID CAMPARD, JEAN-PIERRE VANNIER, AND JANINE GUESPIN
MODELING AND ANALYZING THREE-DIMENSIONAL STRUCTURES OF HUMAN 439 DISEASE
PROTEINS YUZHEN YE, ZHANWEN LI, AND ADAM GODZIK
DESIGN AND ANALYSIS OF GENETIC STUDIES AFTER THE HAPMAP PROJECT
SESSION INTRODUCTION 451
FRANCISCO M. DE LA VEGA, ANDREW G. CLARK, ANDREW COLLINS, AND KENNETH K.
KIDD
RELAXING HAPLOTYPE BLOCK MODELS FOR ASSOCIATION TESTING 454 NATALIE
CASTELLANA, KEDAR DHAMDHERE, SRINATH SRIDHAR, AND RUSSELL SCHWARTZ
IMAGE 7
EFFECT OF THE PEROXISOME PROLIFERATORS-ACTIVATED RECEPTOR (PPAR) 467
GAMMA 3 GENE ON BMI IN 1,210 SCHOOL STUDENTS FROM MORELOS, MEXICO LINA
CHEN, H. EDUARDO VELASCO MONDRAGON, EDUARDO LAZCANO-PONCE, ANDREW
COLLINS, AND YIN YAO SHUGART
TRANSFERABILITY OF TAG SNPS TO CAPTURE COMMON GENETIC VARIATION 478 IN
DNA REPAIR GENES ACROSS MULTIPLE POPULATIONS PAUL I.W. DE BAKKER, ROBERT
R. GRAHAM, DAVID ALTSHULER, BRIAN E. HENDERSON, AND CHRISTOPHER A.
HAIMAN
A TOOL FOR SELECTING SNPS FOR ASSOCIATION STUDIES BASED ON 487 OBSERVED
LINKAGE DISEQUILIBRIUM PATTERNS FRANCISCO M. DE LA VEGA, HADAR I. ISAAC,
AND CHARLES R. SCAFE
DATA SIMULATION SOFTWARE FOR WHOLE-GENOME ASSOCIATION AND 499 OTHER
STUDIES IN HUMAN GENETICS SCOTT M. DUDEK, ALISON A. MOTSINGER, DIGNA R.
VELEZ, SCOTT M. WILLIAMS, AND MARYLYN D. RITCHIE
TAGSNP SELECTION BASED ON PAIRWISE LD CRITERIA AND POWER 511 ANALYSIS IN
ASSOCIATION STUDIES SHYAM GOPALAKRISHNAN AND ZHAOHUI S. QIN
EFFICIENT TWO-STAGE GENOME-WIDE ASSOCIATION DESIGNS BASED ON 523 FALSE
POSITIVE REPORT PROBABILITIES PETER KRAFT
THE WHOLE GENOME TAGSNP SELECTION AND TRANSFERABILITY AMONG 535 HAPMAP
POPULATIONS REEDIK MAGI, LAURIS KAPLINSKI, AND MAIDO REMM
COMPUTATIONAL APPROACHES FOR PHARMACOGENOMICS
SESSION INTRODUCTION 544
MICHELLE W. CARRILLO, RUSSELL A. WILKE, AND MARYLYN D. RITCHIE
CLASS PREDICTION FROM TIME SERIES GENE EXPRESSION PROFILES USING 547
DYNAMICAL SYSTEMS KERNELS KARSTEN M. BORGWARDT, S.V.N. VISHWANATHAN, AND
HANS-PETER KRIEGEL
IMAGE 8
COMPUTATIONAL STRATEGY FOR DISCOVERING DRUGGABLE GENE NETWORKS 559
FROM GENOME-WIDE RNA EXPRESSION PROFILES SEIYA IMOTO, YOSHINORI TAMADA,
HIROMITSU ARAKI, KAORI YASUDA, CRISTIN G. PRINT, STEPHEN D.
CHARNOCK-JONES, DEBORAH SANDERS, CHRISTOPHER J. SAVOIE, KOUSUKE TASHIRO,
SATORU KUHARA, AND SATORU MIYANO
A BIVARIATE FUNCTIONAL MAPPING MODEL FOR IDENTIFYING HAPLOTYPES 572 THAT
CONTROL DRUG RESPONSE FOR SYSTOLIC AND DIASTOLIC BLOOD PRESSURES MIN
LIN, RONGLING WU, AND JULIE JOHNSON
RISK FACTOR INTERACTIONS AND GENETIC EFFECTS ASSOCIATED WITH 584
POST-OPERATIVE ATRIAL FIBRILLATION ALISON A. MOTSINGER, BRIAN S.
DONAHUE, NANCY J. BROWN, DAN M. RODEN, AND MARYLYN D. RITCHIE
LEARNING A PREDICTIVE MODEL FOR GROWTH INHIBITION FROM THE NCI 596 DTP
HUMAN TUMOR CELL LINE SCREENING DATA: DOES GENE EXPRESSION MAKE A
DIFFERENCE? LOTHAR RICHTER, ULRICH RIICKERT, AND STEFAN KRAMER
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| spelling | Pacific Symposium on Biocomputing 2006 Maui, Hawaii, 3 - 7 January 2006 ed. by: Russ B. Altman ... Singapore [u.a.] World Scientific 2006 XVII, 607 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Literaturangaben 1\p (DE-588)1071861417 Konferenzschrift gnd-content Altman, Russ B. Sonstige oth Pacific Symposium on Biocomputing 2006 Sonstige (DE-588)6052250-1 oth GBV Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022122134&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis 1\p cgwrk 20201028 DE-101 https://d-nb.info/provenance/plan#cgwrk |
| spellingShingle | Pacific Symposium on Biocomputing 2006 Maui, Hawaii, 3 - 7 January 2006 |
| subject_GND | (DE-588)1071861417 |
| title | Pacific Symposium on Biocomputing 2006 Maui, Hawaii, 3 - 7 January 2006 |
| title_auth | Pacific Symposium on Biocomputing 2006 Maui, Hawaii, 3 - 7 January 2006 |
| title_exact_search | Pacific Symposium on Biocomputing 2006 Maui, Hawaii, 3 - 7 January 2006 |
| title_full | Pacific Symposium on Biocomputing 2006 Maui, Hawaii, 3 - 7 January 2006 ed. by: Russ B. Altman ... |
| title_fullStr | Pacific Symposium on Biocomputing 2006 Maui, Hawaii, 3 - 7 January 2006 ed. by: Russ B. Altman ... |
| title_full_unstemmed | Pacific Symposium on Biocomputing 2006 Maui, Hawaii, 3 - 7 January 2006 ed. by: Russ B. Altman ... |
| title_short | Pacific Symposium on Biocomputing 2006 |
| title_sort | pacific symposium on biocomputing 2006 maui hawaii 3 7 january 2006 |
| title_sub | Maui, Hawaii, 3 - 7 January 2006 |
| topic_facet | Konferenzschrift |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=022122134&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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