Computational systems bioinformatics: CSB2007 Conference proceedings ; University of California, San Diego, USA, 13-17 August 2007
Gespeichert in:
| Weitere Verfasser: | |
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| Format: | Tagungsbericht Buch |
| Sprache: | English |
| Veröffentlicht: |
London
Imperial College Press
2007
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| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XVI, 454 S. graph. Darst. |
| ISBN: | 9781860948725 1860948723 |
Internformat
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Datensatz im Suchindex
| _version_ | 1804142616595398656 |
|---|---|
| adam_text | xiii
CONTENTS
Preface vii
Committees ix
Referees xi
Keynote Address
Quantitative Aspects of Gene Regulation in Bacteria: Amplification. Threshold, and Combinatorial Control
Terry Hwa 3
Whole-Genome Analysis of Dorsal Gradient Thresholds in the Drosophila Embryo
Julia Zeitlinger, Rob Zinzen, Dmitri Papatsenko et al. 5
Invited Talks
Learning Predictive Models of Gene Regulation
Christina Leslie 9
The Phylofacts Phylogenomic Encyclopedias: Structural Phylogenomic Analysis Across the Tree of Life
Kimmen Sjolander 11
Mapping and Analysis of the Human Interactome Network
Kavitha Venkatesan 13
Gene-Centered Protein-DNA Interactome Mapping
A.J. Marian Walhout 15
Proteomics
Algorithm for Peptide Sequencing by Tandem Mass Spectrometry Based on Better Preprocessing and
Anti-Symmetric Computational Model
Kang Ning and Hon Wai Leong 19
Algorithms for Selecting Breakpoint Locations to Optimize Diversity in Protein Engineering by
Site-Directed Protein Recombination
Wei Zheng, Xiaoduan Ye, Alan M. Friedman and Chris Bailey-Kellogg 31
An Algorithmic Approach to Automated High-Throughput Identification of Disulfide Connectivity in
Proteins Using Tandem Mass Spectrometry
Timothy Lee, Rahul Singh, Ten-Yang Yen and Bruce Macher 41
xiv
Biomedical Application
Cancer Molecular Pattern Discovery by Subspace Consensus Kernel Classification
Xiaoxu Han 55
Efficient Algorithms for Genome-Wide tagSNP Selection Across Populations via the Linkage
Disequilibrium Criterion
Lan Liu, Yonghui Wu, Stefano Lonardi and Tao Jiang 67
Transcriptional Profiling of Definitive Endoderm Derived from Human Embryonic Stem Cells
Huiqing Liu, Stephen Dalton and Ting Xu 79
Pathways, Networks and Systems Biology
Bayesian Integration of Biological Prior Knowledge into the Reconstruction of Gene Regulatory
Networks with Bayesian Networks
Dirk Husmeier andAdriano V. Werhli 85
Using Indirect Protein-Protein Interactions for Protein Complex Predication
Hon Man Chua, Kang Ning, Wing-Kin Sung et al. 97
Finding Linear Motif Pairs from Protein Interaction Networks: A Probabilistic Approach
Henry CM. Leung, M.H. Siu, S.M. Ym et al. Ill
A Markov Model Based Analysis of Stochastic Biochemical Systems
Preetam Ghosh, Samik Ghosh, Kalyan Basu and Sajial K. Das 121
An Information Theoretic Method for Reconstructing Local Regulatory Network Modules from
Polymorphic Samples
Manjunatha Jagalur and David Kulp 13 3
Using Directed Information to Build Biologically Relevant Influence
Arvind Rao, Alfred O. Hero HI, David J. States and James Douglas Engel 145
Discovering Protein Complexes in Dense Reliable Neighborhoods of Protein Interaction Networks
Xiao-Li Li, Chuan-Sheng Foo and See-Kiong Ng 157
Mining Molecular Contexts of Cancer via In-Silico Conditioning
Seungchan Kim, Ina Sen and Micheal Bittner 169
Genomics
Prediction of Transcription Start Sites Based on Feature Selection Using AMOSA
Xi Wang, Sanghamitra Bandyopadhyay, Zhenyu Xuan et al. 183
Clustering of Main Orthologs for Multiple Genomes
Zheng Fu and Tao Jiang 95
Deconvoluting the BAC-Gene Relationships Using a Physical Map
Yonghui Wu, Lan Liu, Timothy J. Close and Stefano Lonardi 203
v
A Grammar Based Methodology for Structural Motif Finding in ncRNA Database Search
Daniel Quest, William Tapprich andHesham AH 215
IEM: An Algorithm for Iterative Enhancement of Motifs Using Comparative Genomics Data
Erliang Zeng, Kalai Mathee and Giri Narasimhan 227
MANGO: A New Approach to Multiple Sequence Alignment
Zefeng Zhang, Hao Lin and Ming Li 237
Learning Position Weight Matrices from Sequence and Expression Data
Xin Chen, Lingqiong Guo, Zhaocheng Fan and Tao Jiang 249
Structural Bioinformatics
Effective Labeling of Molecular Surface Points for Cavity Detection and Location of Putative
Binding Sites
Mary Ellen Bock, Claudia Garutti and Coneltina Guerra 263
Extraction, Quantification and Visualization of Protein Pockets
Xiaoyu Zhang and Chandrajit Bajaj 275
Uncovering the Structural Basis of Protein Interactions with Efficient Clustering of 3-D Interaction
Interfaces
Zevar Aung, Soon-Heng Tan, See-Kiong Ng and Kian-Lee Tan 287
Enhanced Partial Order Curve Comparison Over Multiple Protein Folding Trajectories
Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota and Yu.su Wang 299
fRMSDPred: Predicting Local RMSD Between Structural Fragments Using Sequence Information
Huzefa Rangwala and Geoige Karypis 311
Consensus Contact Prediction by Linear Programming
Xin Gao. Dongbo Bu, Shuai Cheng Li et al. 323
Improvement in Protein Sequence-Structure Alignment Using Insertion/Deletion Frequency Arrays
Kyle Ellrott, Jun-Tao Guo, Victor 01 man and Ting Xu 335
Composite Motifs Integrating Multiple Protein Structures Increase Sensitivity for Function Prediction
Brian Y. Chen, Drew H. Bryant, Amanda E. Crucss et al. 343
Ontology, Database and Text Mining
An Active Visual Search Interface for Medline
Weijian Xuan, Manhong Dai, Barbara Mirel et al. 359
Rule-Based Huamn Gene Normalization in Biomedical Text with Confidence Estimation
William W. Lau, Calvin A. Johnson and Kevin G. Becker 371
xvi
CBioC: Beyond a Prototype for Collaborative Annotation of Molecular Interactions from the Literature
Chitta Baral, Graciela Gonzalez, Anthony Gitter et al. 381
Biocomputing
Supercomputing with Toys: Harnessing the Power of NVIDIA 8800GTX and Playstation 3 for
Bioinformatics Problem
Justin Wilson, Manhong Dai, Elvis Jakupovic et al. 387
Exact and Heuristic Algorithms for Weighted Cluster Editing
Sven Rahmann, Tobias Wittkop, Jan Baumbach et al. 391
Method for Effective Virtual Screening and Scaffold-Hopping in Chemical Compounds
Nikil Wale, George Karypis and Ian A. Watson 403
Transcriptomics and Phylogeny
Improving the Design of Genechip Arrays by Combining Placement and Embedding
Sergio Anibal de Carvalho Jr. and Sven Rahmann All
Modeling Species-Genes Data for Efficient Phylogenetic Inference
Wenyuan Li and Ying Liu 429
Reconcilation with Non-Binary Species Trees
Benjamin Vernot, Maureen Stolzer, Alton Goldman and Dannie Durand 441
Author Index 453
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| spelling | Computational systems bioinformatics CSB2007 Conference proceedings ; University of California, San Diego, USA, 13-17 August 2007 Life Sciences Soc. Ed. Peter Markstein ... London Imperial College Press 2007 XVI, 454 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier 1\p (DE-588)1071861417 Konferenzschrift gnd-content Markstein, Peter edt Life Sciences Society Sonstige (DE-588)6518416-6 oth Computational Systems Bioinformatics Conference 6 2007 La Jolla, Calif. Sonstige (DE-588)6518418-X oth HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=020073628&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis 1\p cgwrk 20201028 DE-101 https://d-nb.info/provenance/plan#cgwrk |
| spellingShingle | Computational systems bioinformatics CSB2007 Conference proceedings ; University of California, San Diego, USA, 13-17 August 2007 |
| subject_GND | (DE-588)1071861417 |
| title | Computational systems bioinformatics CSB2007 Conference proceedings ; University of California, San Diego, USA, 13-17 August 2007 |
| title_auth | Computational systems bioinformatics CSB2007 Conference proceedings ; University of California, San Diego, USA, 13-17 August 2007 |
| title_exact_search | Computational systems bioinformatics CSB2007 Conference proceedings ; University of California, San Diego, USA, 13-17 August 2007 |
| title_full | Computational systems bioinformatics CSB2007 Conference proceedings ; University of California, San Diego, USA, 13-17 August 2007 Life Sciences Soc. Ed. Peter Markstein ... |
| title_fullStr | Computational systems bioinformatics CSB2007 Conference proceedings ; University of California, San Diego, USA, 13-17 August 2007 Life Sciences Soc. Ed. Peter Markstein ... |
| title_full_unstemmed | Computational systems bioinformatics CSB2007 Conference proceedings ; University of California, San Diego, USA, 13-17 August 2007 Life Sciences Soc. Ed. Peter Markstein ... |
| title_short | Computational systems bioinformatics |
| title_sort | computational systems bioinformatics csb2007 conference proceedings university of california san diego usa 13 17 august 2007 |
| title_sub | CSB2007 Conference proceedings ; University of California, San Diego, USA, 13-17 August 2007 |
| topic_facet | Konferenzschrift |
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