Functional proteomics: methods and protocols
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
New York, NY
Humana
2008
|
| Schriftenreihe: | Methods in molecular biology
484 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XVII, 595 S. Ill., graph. Darst. |
| ISBN: | 9781588299710 9781597453981 |
Internformat
MARC
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| 245 | 1 | 0 | |a Functional proteomics |b methods and protocols |c Julie D. Thompson ... |
| 264 | 1 | |a New York, NY |b Humana |c 2008 | |
| 300 | |a XVII, 595 S. |b Ill., graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
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Datensatz im Suchindex
| _version_ | 1804137794390458368 |
|---|---|
| adam_text | Contents
Preface
...............................................................
v
Contributors
.......................................................... xiii
Part I: Introduction
1.
A Brief Summary of the Different Types of Mass Spectrometers
Used in Proteomics
.......................................... 3
Christine Schaeffer-Reiss
2.
Experimental Setups and Considerations to Study Microbial
Interactions
................................................. 17
Petter
Melin
Part II: Proteomics
3.
Plant Proteomics
............................................... 29
Eric Sarnighausen and
Ralf
Reski
4.
Methods for Human CDS 1
T
Lymphocyte Proteome Analysis
___ 45
Lynne
Thadikkaran, Nathalie
Rufer,
Corinne
Benay,
David Crettaz, and
Jean-Daniel Tissot
5.
Label-Free Proteomics of Serum
................................ 67
Natalia Govorukhina, Peter Horvatovich,
and
Rainer
Bischoff
6.
Flow Cytometric Analysis of Cell Membrane Microparticles
..... 79
Monique
P.
Gelderman
and Jan Simak
Part III: Protein Expression Profiling
7.
Exosomes
...................................................... 97
Joost
P.
ƒ.
J. Hegmans, Peter
J. Gerber,
and Bart
N.
Lambrecht
8.
Toward a Full Characterization of the Human 20S Proteasome
Subunits and Their Isoforms by a Combination of Proteomic
Approaches
.................................................111
Sandrine Uttenweiler-Joseph, Stéphane Claverol,
Lo ik Sylvius, Marie-Pierre Bousquet-Dubouch,
Odile Burlet-Schiltz,
and Bernard Monsarrat
ix
i(
Contents
9.
Free-Flow
Electrophoresis
of the Human Urinary Proteome
......131
Mikkel
Nissum and Robert Wildgruber
10.
Versatile Screening for Binary Protein-Protein Interactions
by Yeast Two-Hybrid Mating
................................145
StefJ. F.
Letteboer
and Ronald Roepman
11.
Native Fractionation: Isolation of Native Membrane-Bound
Protein Complexes from Porcine Rod Outer Segments Using
Isopycnic Density Gradient Centrifugation
...................161
Magdalena
Swiatek-de
Lange, Bernd Müller,
and
Maríus
Ueffing
12.
Mapping of Signaling Pathways by Functional
Interaction Proteomics
.......................................177
Alex von Kriegsheim,
Christian Preisinger,
and Walter Kolch
13.
Selection of
Recombinant
Antibodies by Eukaryotic
Ribosome Display
...........................................193
Mingyue He and Michael J. Taussig
14.
Production of Protein Arrays by Cell-Free Systems
...............207
Mingyue He and MichaelJ. Taussig
15.
Nondenaturing Mass Spectrometry to Study Noncovalent
Protein/Protein and
Protei
n/Ligand Complexes: Technical
Aspects and Application to the Determination of Binding
Stoichiometries
..............................................217
Sarah
Sanglier,
Cédríc Atmanene,
Guillaume Chevreux,
and Alain Van Dorsselaer
16.
Protein Processing Characterized by a Gel-Free
Proteomics Approach
........................................245
Petra
Van Damme, Francis Impens,
Joel Vandekerckhove, and Kris Gevaert
17.
Identification and Characterization of N-Glycosylated Proteins
Using Proteomics
...........................................263
David S. Selby, Martin R. Larsen,
Cosima
Damiana
Calvano, and
Ole N0rregaard
Jensen
Part IV: Protein Analysis
18.
Data Standards and Controlled Vocabularies for Proteomics
.....279
Lennart
Martens,
Luisa Montecchi
Palazzi,
and
Henning Hermjakob
19.
The PRIDE Proteomics Identifications Database: Data
Submission, Query, and
Dataset
Comparison
.................287
Philip Jones and Richard
Côté
Contents xi
20.
Searching the Protein Interaction Space Through
the MINT Database
..........................................305
Andrew Chatr-aryamontri, Andreas Zanzoni,
Arnaud Ceol,
and Gianni Cesareni
21.
PepSeeker: Mining Information from Proteomic Data
............319
Jennifer A. Siepen, Julian
N.
Selley, and Simon J. Hubbard
22.
Toward High-Throughput and Reliable
Peptide
Identification
via MS/MS Spectra
..........................................333
Jian
Liu
23.
MassSorter:
Peptide
Mass Fingerprinting Data Analysis
..........345
¡ngvar
Eidhammer, Harald Barsnes,
and Svein-Ole Mikalsen
24.
Database Similarity Searches
...................................361
Frederic Plewniak
25.
Protein Multiple Sequence Alignment
...........................379
Chuong B. Do and Kazutaka Katoh
26.
Discovering
Biomedical
Knowledge from the Literature
.........415
Jasmin Sarit,
Henriette Engelken,
and
Uwe Reyle
27.
Protein Subcellular Localization Prediction Using Artificial
Intelligence Technology
.....................................435
Rajesh Nair and
Burkhard Rost
28.
Protein Functional Annotation by Homology
....................465
Raja Mazumder,
Sona Vasudevan,
and
Anastasia
N.
Nikolskaya
29.
Designability and Disease
......................................491
Philip Wong and Dmitrij Frishman
30.
Prism: Protein-Protein Interaction Prediction by Structural
Matching
...................................................505
Ozlem Keskin, Ruth Nussinov, and
Attila
Gursoy
31.
Prediction of Protein Interaction Based on Similarity
of Phylogenetic Trees
........................................523
Florencio Pazos,
David Juan, Jose M. G. Izarzugaza,
Eduardo
Leon, and Alfonso Valencia
32.
Large Multiprotein Structures Modeling
and Simulation: The Need for Mesoscopic Models
............537
Antoine Coulon, Guillaume Beslon,
and Olivier Gandrillon
33.
Dynamic Pathway Modeling of Signal Transduction
Networks: A Domain-Oriented Approach
....................559
Holger Conzelmann
and Ernst-Dieter
Gilles
Index
...............................................................579
|
| adam_txt |
Contents
Preface
.
v
Contributors
. xiii
Part I: Introduction
1.
A Brief Summary of the Different Types of Mass Spectrometers
Used in Proteomics
. 3
Christine Schaeffer-Reiss
2.
Experimental Setups and Considerations to Study Microbial
Interactions
. 17
Petter
Melin
Part II: Proteomics
3.
Plant Proteomics
. 29
Eric Sarnighausen and
Ralf
Reski
4.
Methods for Human CDS'1'
T
Lymphocyte Proteome Analysis
_ 45
Lynne
Thadikkaran, Nathalie
Rufer,
Corinne
Benay,
David Crettaz, and
Jean-Daniel Tissot
5.
Label-Free Proteomics of Serum
. 67
Natalia Govorukhina, Peter Horvatovich,
and
Rainer
Bischoff
6.
Flow Cytometric Analysis of Cell Membrane Microparticles
. 79
Monique
P.
Gelderman
and Jan Simak
Part III: Protein Expression Profiling
7.
Exosomes
. 97
Joost
P.
ƒ.
J. Hegmans, Peter
J. Gerber,
and Bart
N.
Lambrecht
8.
Toward a Full Characterization of the Human 20S Proteasome
Subunits and Their Isoforms by a Combination of Proteomic
Approaches
.111
Sandrine Uttenweiler-Joseph, Stéphane Claverol,
Lo'ik Sylvius, Marie-Pierre Bousquet-Dubouch,
Odile Burlet-Schiltz,
and Bernard Monsarrat
ix
i(
Contents
9.
Free-Flow
Electrophoresis
of the Human Urinary Proteome
.131
Mikkel
Nissum and Robert Wildgruber
10.
Versatile Screening for Binary Protein-Protein Interactions
by Yeast Two-Hybrid Mating
.145
StefJ. F.
Letteboer
and Ronald Roepman
11.
Native Fractionation: Isolation of Native Membrane-Bound
Protein Complexes from Porcine Rod Outer Segments Using
Isopycnic Density Gradient Centrifugation
.161
Magdalena
Swiatek-de
Lange, Bernd Müller,
and
Maríus
Ueffing
12.
Mapping of Signaling Pathways by Functional
Interaction Proteomics
.177
Alex von Kriegsheim,
Christian Preisinger,
and Walter Kolch
13.
Selection of
Recombinant
Antibodies by Eukaryotic
Ribosome Display
.193
Mingyue He and Michael J. Taussig
14.
Production of Protein Arrays by Cell-Free Systems
.207
Mingyue He and MichaelJ. Taussig
15.
Nondenaturing Mass Spectrometry to Study Noncovalent
Protein/Protein and
Protei
n/Ligand Complexes: Technical
Aspects and Application to the Determination of Binding
Stoichiometries
.217
Sarah
Sanglier,
Cédríc Atmanene,
Guillaume Chevreux,
and Alain Van Dorsselaer
16.
Protein Processing Characterized by a Gel-Free
Proteomics Approach
.245
Petra
Van Damme, Francis Impens,
Joel Vandekerckhove, and Kris Gevaert
17.
Identification and Characterization of N-Glycosylated Proteins
Using Proteomics
.263
David S. Selby, Martin R. Larsen,
Cosima
Damiana
Calvano, and
Ole N0rregaard
Jensen
Part IV: Protein Analysis
18.
Data Standards and Controlled Vocabularies for Proteomics
.279
Lennart
Martens,
Luisa Montecchi
Palazzi,
and
Henning Hermjakob
19.
The PRIDE Proteomics Identifications Database: Data
Submission, Query, and
Dataset
Comparison
.287
Philip Jones and Richard
Côté
Contents xi
20.
Searching the Protein Interaction Space Through
the MINT Database
.305
Andrew Chatr-aryamontri, Andreas Zanzoni,
Arnaud Ceol,
and Gianni Cesareni
21.
PepSeeker: Mining Information from Proteomic Data
.319
Jennifer A. Siepen, Julian
N.
Selley, and Simon J. Hubbard
22.
Toward High-Throughput and Reliable
Peptide
Identification
via MS/MS Spectra
.333
Jian
Liu
23.
MassSorter:
Peptide
Mass Fingerprinting Data Analysis
.345
¡ngvar
Eidhammer, Harald Barsnes,
and Svein-Ole Mikalsen
24.
Database Similarity Searches
.361
Frederic Plewniak
25.
Protein Multiple Sequence Alignment
.379
Chuong B. Do and Kazutaka Katoh
26.
Discovering
Biomedical
Knowledge from the Literature
.415
Jasmin Sarit,
Henriette Engelken,
and
Uwe Reyle
27.
Protein Subcellular Localization Prediction Using Artificial
Intelligence Technology
.435
Rajesh Nair and
Burkhard Rost
28.
Protein Functional Annotation by Homology
.465
Raja Mazumder,
Sona Vasudevan,
and
Anastasia
N.
Nikolskaya
29.
Designability and Disease
.491
Philip Wong and Dmitrij Frishman
30.
Prism: Protein-Protein Interaction Prediction by Structural
Matching
.505
Ozlem Keskin, Ruth Nussinov, and
Attila
Gursoy
31.
Prediction of Protein Interaction Based on Similarity
of Phylogenetic Trees
.523
Florencio Pazos,
David Juan, Jose M. G. Izarzugaza,
Eduardo
Leon, and Alfonso Valencia
32.
Large Multiprotein Structures Modeling
and Simulation: The Need for Mesoscopic Models
.537
Antoine Coulon, Guillaume Beslon,
and Olivier Gandrillon
33.
Dynamic Pathway Modeling of Signal Transduction
Networks: A Domain-Oriented Approach
.559
Holger Conzelmann
and Ernst-Dieter
Gilles
Index
.579 |
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| index_date | 2024-07-02T21:26:22Z |
| indexdate | 2024-07-09T21:17:57Z |
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| isbn | 9781588299710 9781597453981 |
| language | English |
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| series2 | Methods in molecular biology Springer-Protocols |
| spelling | Functional proteomics methods and protocols Julie D. Thompson ... New York, NY Humana 2008 XVII, 595 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Methods in molecular biology 484 Springer-Protocols Proteínas larpcal Proteomics Proteomics methods Laboratory Manuals Proteomanalyse (DE-588)4596545-6 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Proteomanalyse (DE-588)4596545-6 s b DE-604 Thompson, Julie D. Sonstige oth Methods in molecular biology 484 (DE-604)BV035362695 484 Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016590823&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Functional proteomics methods and protocols Methods in molecular biology Proteínas larpcal Proteomics Proteomics methods Laboratory Manuals Proteomanalyse (DE-588)4596545-6 gnd |
| subject_GND | (DE-588)4596545-6 (DE-588)4143413-4 |
| title | Functional proteomics methods and protocols |
| title_auth | Functional proteomics methods and protocols |
| title_exact_search | Functional proteomics methods and protocols |
| title_exact_search_txtP | Functional proteomics methods and protocols |
| title_full | Functional proteomics methods and protocols Julie D. Thompson ... |
| title_fullStr | Functional proteomics methods and protocols Julie D. Thompson ... |
| title_full_unstemmed | Functional proteomics methods and protocols Julie D. Thompson ... |
| title_short | Functional proteomics |
| title_sort | functional proteomics methods and protocols |
| title_sub | methods and protocols |
| topic | Proteínas larpcal Proteomics Proteomics methods Laboratory Manuals Proteomanalyse (DE-588)4596545-6 gnd |
| topic_facet | Proteínas Proteomics Proteomics methods Laboratory Manuals Proteomanalyse Aufsatzsammlung |
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