Holdings: An introduction to molecular ecology

An introduction to molecular ecology:

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Bibliographic Details
Main Authors:	Beebee, Trevor J. C. (Author), Rowe, Graham (Author)
Format:	Book
Language:	English
Published:	Oxford [u.a.] Oxford Univ. Press 2008
Edition:	2. ed.
Subjects:	Biologie moléculaire Écologie moléculaire Écologie Ökologie Molekularbiologie Lehrbuch
Online Access:	Inhaltsverzeichnis
Item Description:	Literaturverz. S. 357 - 389. - 3. Auflage unter dem Titel: Rowe, Graham: An introduction to molecular ecology
Physical Description:	XV, 400 S. Ill., graph. Darst., Kt.
ISBN:	9780199292059

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adam_text	DETAILED CONTENTS Preface xiv Acknowledgements xvi 1 A history of molecular ecology 1 Introduction 1 An evolutionary perspective for molecular ecology 3 Systematics, phylogenetics, and the species concept 3 Variation within species 4 The origins of modern genetics 6 The modern synthesis 6 The neutral theory of molecular evolution 8 Behavioural ecology 9 Genetics in ecology 10 Ecological genetics 10 Genotype, phenotype, and phenotypic plasticity 12 What is a molecular marker? 13 Mutation mechanisms of molecular markers 15 Milestones in molecular ecology 16 Early days of molecular ecology 1 6 Allozyme electrophoresis 16 Restriction fragment length polymorphism 19 Minisatellite DNA fingerprinting 22 The polymerase chain reaction 24 PCR-based molecular markers 27 DNA sequencing 31 Molecular ecology today 36 Summary 39 General reading 40 2 Molecular biology for ecologists 41 Introduction 41 Nucleic acids and the common origin of life 42 The structures of DNA and RNA 43 Primary structure of nucleic acids 43 Secondary structure of nucleic acids 45 DNA replication 46 Detailed contents Protein structure 49 Basic immunology 52 The genetic code and gene expression 53 Genome structure: an overview 55 Non-coding DNA 58 Functional (coding) DNA 61 Ribosomal DNA 61 Nuclear structural (protein-coding) genes 62 Mitochondrial DNA 62 Chloroplast DNA 64 Plasmids and genetic manipulation in molecular ecology 65 Mutation 67 Somatic mutations 68 Germline mutations 68 DNA point mutations 69 Other types of mutation 70 Evolution and the mutation rate 71 Summary 72 General reading 73 3 Molecular identification: species, individuals, and sex 74 Introduction 74 The species question 75 Defining distinctiveness 75 Hybrids 79 Dealing with individuals 84 Basic identification 84 Competition between toads and the problem of indistinguishable larvae 84 Speeding up identification: the use of SNP-based probes 85 Identification of prey in predator guts 86 Forensic investigations 88 DNA bareodíng: towards an inventory of life 89 Sex 90 Bits of individuals: non-invasive sampling 92 Molecular identification methods: an appraisal 96 Protein analysis 97 DNA analysis 97 Summary 98 Review articles 99 Detailed contents e 4 Behavioural ecology 101 Introduction 101 From monogamy to promiscuity 102 Animal mating systems 102 Use of single locus profiling 103 Determining unknown mating systems 105 Lekking 106 Sexual dimorphism and male dominance 108 Dominance hierarchies 109 Female reproductive behaviour 110 Sperm competition 111 Why is female promiscuity adaptive? 112 Mate choice and the MHC 114 Sexual conflict 116 Sex ratio biases in offspring 117 Cooperative behaviour 118 Cooperative breeding in birds 118 Social insects 119 Cheating tactics 121 Interspecific brood parasitism 121 Intraspecific brood parasitism 122 Foraging and dispersal 123 Foraging 123 Dispersal 124 Behavioural ly mediated speciation 127 Summary 134 Review articles 135 5 Population genetics 136 Introduction 136 Genetic diversity in natural populations 137 Some basic concepts 137 Population size and genetic diversity 139 Mammalian examples of population size and genetic diversity estimates 143 Effective population size 146 Genetic estimators of effective population size 146 Detailed contents Population bottlenecks and expansions 150 The significance of population bottlenecks 150 Genetic tests for population bottlenecks 150 Founder effects and population expansions 153 Population structure 154 Assessing where subdivisions occur 154 Statistical tests for historical population structure 156 Marker selection for the study of population subdivision 158 The genetics of metapopulations 161 Metapopulations 161 Testing whether metapopulations exist 162 Distinguishing different types of metapopulations 163 Gene flow and migration rates 165 Genetic estimation of gene flow and migration rates 165 Isolation-by-distance 166 Maximum likelihood methods for estimating migration rates 170 Identification of immigrants 172 Landscape genetics: bringing it all together 173 Molecular markers for population genetics: an appraisal 174 The basis for choice 175 Fundamental tests 176 Summary 177 Review articles 178 6 Molecular and adaptive variation 183 Introduction 183 Neutral markers that are not really neutral 186 Allozymes 186 Nuclear DNA markers 188 Mitochondrial DNA 189 Heterozygosity and fitness 190 Background 190 Allozyme studies 191 DNA markers 192 Molecular approaches to understanding adaptive variation 195 Comparisons of neutral and adaptive variation 195 Variation at specific loci 196 Gene mapping 199 Quantitative traits and adaptive variation 200 Detailed contents Genomics and the study of adaptive variation 203 Summary 206 Review articles 206 7 Phylogeography 209 Introduction 209 Molecular markers in phylogeography 210 Early phylogeography 210 MtDNA as the standard phylogeographic tool 213 Alternatives to mtDNA 213 Genealogies and the coalescent process 214 Genetic variation in space 216 Geographic patterns in single populations 216 Vicariance and dispersal 218 Divergence between populations: drift versus gene flow 220 Gene flow between species 221 Genetic consequences of the Pleistocene ice ages 221 Phylogeography and coevolution 224 Statistical methods in phylogeography 227 Genetic variation in time 229 Geological events and molecular divergence rates 229 Measuring lineage divergence in real time 230 Applied phylogeography 233 Taxonomic decisions 233 Determining a species natural range 235 Finding the source populations of introduced species 239 Phylogeography and adaptive traits 242 Summary 244 Review articles and books 244 8 Conservation genetics 247 Introduction 247 The state of the biosphere 248 Molecular genetics in conservation biology 250 Genetic diversity as a conservation issue 251 Inbreeding and genetic load 253 The basis of inbreeding effects 253 Inbreeding depression and genetic load in the wild 256 Detailed contents Purging of genetic load 257 Outbreeding depression 259 Genetic restoration 259 Desperate measures 263 Plant conservation 263 Animal conservation 266 Wildlife forensics 268 Genetics in conservation biology - a wider role 269 Systematics and conservation genetics 269 Phylogeography and conservation genetics 271 Conservation management and genetics 273 Globally important areas of genetic diversity 274 Molecular markers in conservation genetics 274 Summary 275 Review articles and books 275 9 Microbial ecology and the metagenome 278 Microbial diversity and the metagenomes 278 Outstanding issues in microbial ecology 280 The role of microbial communities in nature 280 Problems of species identification 283 Population dyanmics and community structure 284 Immunological approaches to microbial ecology 285 Immunological methods 285 Use of antibody identification in microbial ecology 288 Ribosomal genes and microbial ecology: the start of metagenomics 291 Structure and usefulness of ribosomal genes 291 Identification: the use of sequence-specific oligonucleotide probes in microbial ecology 293 New developments, problems, and alternative approaches with probes 294 Ribosomal gene sequencing and community studies 297 Genetic profiling of microbial communities 299 Alternatives to ribosomal genes in profiling approaches 302 Genome approaches to microbial ecology 307 Sequence complexity and microbial diversity 307 Microarrays and microbial ecology 308 Metagenomics as an evolving discipline 309 Viral diversity 311 Detailed contents Overview of microbial molecular ecology 312 Molecular markers for microbial ecology: an appraisal 313 Protein methods 313 Nucleic acid methods 314 Summary 314 Review articles 315 10 Genetically modified organisms 317 Introduction 317 Environmental risks from GMOs 319 The role of molecular ecology in GMO research 321 Horizontal gene transfer in nature 322 Conjugation 323 Transduction 325 Transformation 325 Effects of GMOs on natural communities 326 Transfer of genes from GMOs to other organisms 328 Vertical gene transfer 328 Horizontal gene transfer 331 Effects of introduced genes on other species 333 Future GMO research and molecular markers 336 Summary 338 Review articles 339 Glossary 341 Answers 347 References 357 Index 391
adam_txt	DETAILED CONTENTS Preface xiv Acknowledgements xvi 1 A history of molecular ecology 1 Introduction 1 An evolutionary perspective for molecular ecology 3 Systematics, phylogenetics, and the species concept 3 Variation within species 4 The origins of modern genetics 6 The modern synthesis 6 The neutral theory of molecular evolution 8 Behavioural ecology 9 Genetics in ecology 10 Ecological genetics 10 Genotype, phenotype, and phenotypic plasticity 12 What is a molecular marker? 13 Mutation mechanisms of molecular markers 15 Milestones in molecular ecology 16 Early days of molecular ecology 1 6 Allozyme electrophoresis 16 Restriction fragment length polymorphism 19 Minisatellite DNA fingerprinting 22 The polymerase chain reaction 24 PCR-based molecular markers 27 DNA sequencing 31 Molecular ecology today 36 Summary 39 General reading 40 2 Molecular biology for ecologists 41 Introduction 41 Nucleic acids and the common origin of life 42 The structures of DNA and RNA 43 Primary structure of nucleic acids 43 Secondary structure of nucleic acids 45 DNA replication 46 Detailed contents Protein structure 49 Basic immunology 52 The genetic code and gene expression 53 Genome structure: an overview 55 Non-coding DNA 58 Functional (coding) DNA 61 Ribosomal DNA 61 Nuclear structural (protein-coding) genes 62 Mitochondrial DNA 62 Chloroplast DNA 64 Plasmids and genetic manipulation in molecular ecology 65 Mutation 67 Somatic mutations 68 Germline mutations 68 DNA point mutations 69 Other types of mutation 70 Evolution and the mutation rate 71 Summary 72 General reading 73 3 Molecular identification: species, individuals, and sex 74 Introduction 74 The species question 75 Defining distinctiveness 75 Hybrids 79 Dealing with individuals 84 Basic identification 84 Competition between toads and the problem of indistinguishable larvae 84 Speeding up identification: the use of SNP-based probes 85 Identification of prey in predator guts 86 Forensic investigations 88 DNA bareodíng: towards an inventory of life 89 Sex 90 Bits of individuals: non-invasive sampling 92 Molecular identification methods: an appraisal 96 Protein analysis 97 DNA analysis 97 Summary 98 Review articles 99 Detailed contents e 4 Behavioural ecology 101 Introduction 101 From monogamy to promiscuity 102 Animal mating systems 102 Use of single locus profiling 103 Determining unknown mating systems 105 Lekking 106 Sexual dimorphism and male dominance 108 Dominance hierarchies 109 Female reproductive behaviour 110 Sperm competition 111 Why is female promiscuity adaptive? 112 Mate choice and the MHC 114 Sexual conflict 116 Sex ratio biases in offspring 117 Cooperative behaviour 118 Cooperative breeding in birds 118 Social insects 119 Cheating tactics 121 Interspecific brood parasitism 121 Intraspecific brood parasitism 122 Foraging and dispersal 123 Foraging 123 Dispersal 124 Behavioural ly mediated speciation 127 Summary 134 Review articles 135 5 Population genetics 136 Introduction 136 Genetic diversity in natural populations 137 Some basic concepts 137 Population size and genetic diversity 139 Mammalian examples of population size and genetic diversity estimates 143 Effective population size 146 Genetic estimators of effective population size 146 Detailed contents Population bottlenecks and expansions 150 The significance of population bottlenecks 150 Genetic tests for population bottlenecks 150 Founder effects and population expansions 153 Population structure 154 Assessing where subdivisions occur 154 Statistical tests for historical population structure 156 Marker selection for the study of population subdivision 158 The genetics of metapopulations 161 Metapopulations 161 Testing whether metapopulations exist 162 Distinguishing different types of metapopulations 163 Gene flow and migration rates 165 Genetic estimation of gene flow and migration rates 165 Isolation-by-distance 166 Maximum likelihood methods for estimating migration rates 170 Identification of immigrants 172 Landscape genetics: bringing it all together 173 Molecular markers for population genetics: an appraisal 174 The basis for choice 175 Fundamental tests 176 Summary 177 Review articles 178 6 Molecular and adaptive variation 183 Introduction 183 Neutral markers that are not really neutral 186 Allozymes 186 Nuclear DNA markers 188 Mitochondrial DNA 189 Heterozygosity and fitness 190 Background 190 Allozyme studies 191 DNA markers 192 Molecular approaches to understanding adaptive variation 195 Comparisons of neutral and adaptive variation 195 Variation at specific loci 196 Gene mapping 199 Quantitative traits and adaptive variation 200 Detailed contents Genomics and the study of adaptive variation 203 Summary 206 Review articles 206 7 Phylogeography 209 Introduction 209 Molecular markers in phylogeography 210 Early phylogeography 210 MtDNA as the standard phylogeographic tool 213 Alternatives to mtDNA 213 Genealogies and the coalescent process 214 Genetic variation in space 216 Geographic patterns in single populations 216 Vicariance and dispersal 218 Divergence between populations: drift versus gene flow 220 Gene flow between species 221 Genetic consequences of the Pleistocene ice ages 221 Phylogeography and coevolution 224 Statistical methods in phylogeography 227 Genetic variation in time 229 Geological events and molecular divergence rates 229 Measuring lineage divergence in real time 230 Applied phylogeography 233 Taxonomic decisions 233 Determining a species' natural range 235 Finding the source populations of introduced species 239 Phylogeography and adaptive traits 242 Summary 244 Review articles and books 244 8 Conservation genetics 247 Introduction 247 The state of the biosphere 248 Molecular genetics in conservation biology 250 Genetic diversity as a conservation issue 251 Inbreeding and genetic load 253 The basis of inbreeding effects 253 Inbreeding depression and genetic load in the wild 256 Detailed contents Purging of genetic load 257 Outbreeding depression 259 Genetic restoration 259 Desperate measures 263 Plant conservation 263 Animal conservation 266 Wildlife forensics 268 Genetics in conservation biology - a wider role 269 Systematics and conservation genetics 269 Phylogeography and conservation genetics 271 Conservation management and genetics 273 Globally important areas of genetic diversity 274 Molecular markers in conservation genetics 274 Summary 275 Review articles and books 275 9 Microbial ecology and the metagenome 278 Microbial diversity and the metagenomes 278 Outstanding issues in microbial ecology 280 The role of microbial communities in nature 280 Problems of species identification 283 Population dyanmics and community structure 284 Immunological approaches to microbial ecology 285 Immunological methods 285 Use of antibody identification in microbial ecology 288 Ribosomal genes and microbial ecology: the start of metagenomics 291 Structure and usefulness of ribosomal genes 291 Identification: the use of sequence-specific oligonucleotide probes in microbial ecology 293 New developments, problems, and alternative approaches with probes 294 Ribosomal gene sequencing and community studies 297 Genetic profiling of microbial communities 299 Alternatives to ribosomal genes in profiling approaches 302 Genome approaches to microbial ecology 307 Sequence complexity and microbial diversity 307 Microarrays and microbial ecology 308 Metagenomics as an evolving discipline 309 Viral diversity 311 Detailed contents Overview of microbial molecular ecology 312 Molecular markers for microbial ecology: an appraisal 313 Protein methods 313 Nucleic acid methods 314 Summary 314 Review articles 315 10 Genetically modified organisms 317 Introduction 317 Environmental risks from GMOs 319 The role of molecular ecology in GMO research 321 Horizontal gene transfer in nature 322 Conjugation 323 Transduction 325 Transformation 325 Effects of GMOs on natural communities 326 Transfer of genes from GMOs to other organisms 328 Vertical gene transfer 328 Horizontal gene transfer 331 Effects of introduced genes on other species 333 Future GMO research and molecular markers 336 Summary 338 Review articles 339 Glossary 341 Answers 347 References 357 Index 391
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spelling	Beebee, Trevor J. C. Verfasser aut An introduction to molecular ecology Trevor J. C. Beebee ; Graham Rowe 2. ed. Oxford [u.a.] Oxford Univ. Press 2008 XV, 400 S. Ill., graph. Darst., Kt. txt rdacontent n rdamedia nc rdacarrier Literaturverz. S. 357 - 389. - 3. Auflage unter dem Titel: Rowe, Graham: An introduction to molecular ecology Biologie moléculaire ram Écologie moléculaire Écologie moléculaire ram Écologie ram Ökologie (DE-588)4043207-5 gnd rswk-swf Molekularbiologie (DE-588)4039983-7 gnd rswk-swf 1\p (DE-588)4123623-3 Lehrbuch gnd-content Ökologie (DE-588)4043207-5 s Molekularbiologie (DE-588)4039983-7 s DE-604 Rowe, Graham Verfasser aut Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016252466&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis 1\p cgwrk 20201028 DE-101 https://d-nb.info/provenance/plan#cgwrk
spellingShingle	Beebee, Trevor J. C. Rowe, Graham An introduction to molecular ecology Biologie moléculaire ram Écologie moléculaire Écologie moléculaire ram Écologie ram Ökologie (DE-588)4043207-5 gnd Molekularbiologie (DE-588)4039983-7 gnd
subject_GND	(DE-588)4043207-5 (DE-588)4039983-7 (DE-588)4123623-3
title	An introduction to molecular ecology
title_auth	An introduction to molecular ecology
title_exact_search	An introduction to molecular ecology
title_exact_search_txtP	An introduction to molecular ecology
title_full	An introduction to molecular ecology Trevor J. C. Beebee ; Graham Rowe
title_fullStr	An introduction to molecular ecology Trevor J. C. Beebee ; Graham Rowe
title_full_unstemmed	An introduction to molecular ecology Trevor J. C. Beebee ; Graham Rowe
title_short	An introduction to molecular ecology
title_sort	an introduction to molecular ecology
topic	Biologie moléculaire ram Écologie moléculaire Écologie moléculaire ram Écologie ram Ökologie (DE-588)4043207-5 gnd Molekularbiologie (DE-588)4039983-7 gnd
topic_facet	Biologie moléculaire Écologie moléculaire Écologie Ökologie Molekularbiologie Lehrbuch
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