An introduction to molecular ecology:
Gespeichert in:
Hauptverfasser: | , |
---|---|
Format: | Buch |
Sprache: | English |
Veröffentlicht: |
Oxford [u.a.]
Oxford Univ. Press
2008
|
Ausgabe: | 2. ed. |
Schlagworte: | |
Online-Zugang: | Inhaltsverzeichnis |
Beschreibung: | Literaturverz. S. 357 - 389. - 3. Auflage unter dem Titel: Rowe, Graham: An introduction to molecular ecology |
Beschreibung: | XV, 400 S. Ill., graph. Darst., Kt. |
ISBN: | 9780199292059 |
Internformat
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Datensatz im Suchindex
_version_ | 1804137281232044032 |
---|---|
adam_text | DETAILED CONTENTS
Preface
xiv
Acknowledgements
xvi
1
A history of molecular ecology
1
Introduction
1
An evolutionary perspective for molecular ecology
3
Systematics, phylogenetics, and the species concept
3
Variation within species
4
The origins of modern genetics
6
The modern synthesis
6
The neutral theory of molecular evolution
8
Behavioural ecology
9
Genetics in ecology
10
Ecological genetics
10
Genotype, phenotype, and phenotypic plasticity
12
What is a molecular marker?
13
Mutation mechanisms of molecular markers
15
Milestones in molecular ecology
16
Early days of molecular ecology
1 6
Allozyme electrophoresis
16
Restriction fragment length polymorphism
19
Minisatellite
DNA
fingerprinting
22
The polymerase chain reaction
24
PCR-based molecular markers
27
DNA
sequencing
31
Molecular ecology today
36
Summary
39
General reading
40
2
Molecular biology for ecologists
41
Introduction
41
Nucleic acids and the common origin of life
42
The structures of
DNA
and
RNA
43
Primary structure of nucleic acids
43
Secondary structure of nucleic acids
45
DNA
replication
46
Detailed contents
Protein structure
49
Basic immunology
52
The genetic code and gene expression
53
Genome structure: an overview
55
Non-coding
DNA 58
Functional (coding)
DNA 61
Ribosomal
DNA 61
Nuclear structural (protein-coding) genes
62
Mitochondrial
DNA 62
Chloroplast
DNA 64
Plasmids and genetic manipulation in molecular ecology
65
Mutation
67
Somatic mutations
68
Germline mutations
68
DNA
point mutations
69
Other types of mutation
70
Evolution and the mutation rate
71
Summary
72
General reading
73
3
Molecular identification: species, individuals, and sex
74
Introduction
74
The species question
75
Defining distinctiveness
75
Hybrids
79
Dealing with individuals
84
Basic identification
84
Competition between toads and the problem of indistinguishable larvae
84
Speeding up identification: the use of SNP-based probes
85
Identification of prey in predator guts
86
Forensic investigations
88
DNA bareodíng:
towards an inventory of life
89
Sex
90
Bits of individuals: non-invasive sampling
92
Molecular identification methods: an appraisal
96
Protein analysis
97
DNA
analysis
97
Summary
98
Review articles
99
Detailed contents
e
4
Behavioural ecology
101
Introduction
101
From monogamy to promiscuity
102
Animal mating systems
102
Use of single locus profiling
103
Determining unknown mating systems
105
Lekking
106
Sexual dimorphism and male dominance
108
Dominance hierarchies
109
Female reproductive behaviour
110
Sperm competition
111
Why is female promiscuity adaptive?
112
Mate choice and the MHC
114
Sexual conflict
116
Sex ratio biases in offspring
117
Cooperative behaviour
118
Cooperative breeding in birds
118
Social insects
119
Cheating tactics
121
Interspecific brood parasitism
121
Intraspecific brood parasitism
122
Foraging and dispersal
123
Foraging
123
Dispersal
124
Behavioural ly mediated speciation
127
Summary
134
Review articles
135
5
Population genetics
136
Introduction
136
Genetic diversity in natural populations
137
Some basic concepts
137
Population size and genetic diversity
139
Mammalian examples of population size and genetic diversity estimates
143
Effective population size
146
Genetic estimators of effective population size
146
Detailed contents
Population bottlenecks and expansions
150
The significance of population bottlenecks
150
Genetic tests for population bottlenecks
150
Founder effects and population expansions
153
Population structure
154
Assessing where subdivisions occur
154
Statistical tests for historical population structure
156
Marker selection for the study of population subdivision
158
The genetics of metapopulations
161
Metapopulations
161
Testing whether metapopulations exist
162
Distinguishing different types of metapopulations
163
Gene flow and migration rates
165
Genetic estimation of gene flow and migration rates
165
Isolation-by-distance
166
Maximum likelihood methods for estimating migration rates
170
Identification of immigrants
172
Landscape genetics: bringing it all together
173
Molecular markers for population genetics: an appraisal
174
The basis for choice
175
Fundamental tests
176
Summary
177
Review articles
178
6
Molecular and adaptive variation
183
Introduction
183
Neutral markers that are not really neutral
186
Allozymes
186
Nuclear
DNA
markers
188
Mitochondrial
DNA 189
Heterozygosity and fitness
190
Background
190
Allozyme studies
191
DNA
markers
192
Molecular approaches to understanding adaptive variation
195
Comparisons of neutral and adaptive variation
195
Variation at specific loci
196
Gene mapping
199
Quantitative traits and adaptive variation
200
Detailed contents
Genomics and the study of adaptive variation
203
Summary
206
Review articles
206
7
Phylogeography
209
Introduction
209
Molecular markers in phylogeography
210
Early phylogeography
210
MtDNA as the standard phylogeographic tool
213
Alternatives to mtDNA
213
Genealogies and the coalescent process
214
Genetic variation in space
216
Geographic patterns in single populations
216
Vicariance and dispersal
218
Divergence between populations: drift versus gene flow
220
Gene flow between species
221
Genetic consequences of the Pleistocene ice ages
221
Phylogeography and coevolution
224
Statistical methods in phylogeography
227
Genetic variation in time
229
Geological events and molecular divergence rates
229
Measuring lineage divergence in real time
230
Applied phylogeography
233
Taxonomic
decisions
233
Determining a species natural range
235
Finding the source populations of introduced species
239
Phylogeography and adaptive traits
242
Summary
244
Review articles and books
244
8
Conservation genetics
247
Introduction
247
The state of the biosphere
248
Molecular genetics in conservation biology
250
Genetic diversity as a conservation issue
251
Inbreeding and genetic load
253
The basis of inbreeding effects
253
Inbreeding depression and genetic load in the wild
256
Detailed contents
Purging of genetic load
257
Outbreeding depression
259
Genetic restoration
259
Desperate measures
263
Plant conservation
263
Animal conservation
266
Wildlife forensics
268
Genetics in conservation biology
-
a wider role
269
Systematics and conservation genetics
269
Phylogeography and conservation genetics
271
Conservation management and genetics
273
Globally important areas of genetic diversity
274
Molecular markers in conservation genetics
274
Summary
275
Review articles and books
275
9
Microbial ecology and the metagenome
278
Microbial diversity and the metagenomes
278
Outstanding issues in microbial ecology
280
The role of microbial communities in nature
280
Problems of species identification
283
Population dyanmics and community structure
284
Immunological approaches to microbial ecology
285
Immunological methods
285
Use of antibody identification in microbial ecology
288
Ribosomal genes and microbial ecology: the start of metagenomics
291
Structure and usefulness of ribosomal genes
291
Identification: the use of sequence-specific oligonucleotide probes in
microbial ecology
293
New developments, problems, and alternative approaches with probes
294
Ribosomal gene sequencing and community studies
297
Genetic profiling of microbial communities
299
Alternatives to ribosomal genes in profiling approaches
302
Genome approaches to microbial ecology
307
Sequence complexity and microbial diversity
307
Microarrays and microbial ecology
308
Metagenomics as an evolving discipline
309
Viral diversity
311
Detailed contents
Overview of microbial molecular ecology
312
Molecular markers for microbial ecology: an appraisal
313
Protein methods
313
Nucleic acid methods
314
Summary
314
Review articles
315
10
Genetically modified organisms
317
Introduction
317
Environmental risks from GMOs
319
The role of molecular ecology in GMO research
321
Horizontal gene transfer in nature
322
Conjugation
323
Transduction
325
Transformation
325
Effects of GMOs on natural communities
326
Transfer of genes from GMOs to other organisms
328
Vertical gene transfer
328
Horizontal gene transfer
331
Effects of introduced genes on other species
333
Future GMO research and molecular markers
336
Summary
338
Review articles
339
Glossary
341
Answers
347
References
357
Index
391
|
adam_txt |
DETAILED CONTENTS
Preface
xiv
Acknowledgements
xvi
1
A history of molecular ecology
1
Introduction
1
An evolutionary perspective for molecular ecology
3
Systematics, phylogenetics, and the species concept
3
Variation within species
4
The origins of modern genetics
6
The modern synthesis
6
The neutral theory of molecular evolution
8
Behavioural ecology
9
Genetics in ecology
10
Ecological genetics
10
Genotype, phenotype, and phenotypic plasticity
12
What is a molecular marker?
13
Mutation mechanisms of molecular markers
15
Milestones in molecular ecology
16
Early days of molecular ecology
1 6
Allozyme electrophoresis
16
Restriction fragment length polymorphism
19
Minisatellite
DNA
fingerprinting
22
The polymerase chain reaction
24
PCR-based molecular markers
27
DNA
sequencing
31
Molecular ecology today
36
Summary
39
General reading
40
2
Molecular biology for ecologists
41
Introduction
41
Nucleic acids and the common origin of life
42
The structures of
DNA
and
RNA
43
Primary structure of nucleic acids
43
Secondary structure of nucleic acids
45
DNA
replication
46
Detailed contents
Protein structure
49
Basic immunology
52
The genetic code and gene expression
53
Genome structure: an overview
55
Non-coding
DNA 58
Functional (coding)
DNA 61
Ribosomal
DNA 61
Nuclear structural (protein-coding) genes
62
Mitochondrial
DNA 62
Chloroplast
DNA 64
Plasmids and genetic manipulation in molecular ecology
65
Mutation
67
Somatic mutations
68
Germline mutations
68
DNA
point mutations
69
Other types of mutation
70
Evolution and the mutation rate
71
Summary
72
General reading
73
3
Molecular identification: species, individuals, and sex
74
Introduction
74
The species question
75
Defining distinctiveness
75
Hybrids
79
Dealing with individuals
84
Basic identification
84
Competition between toads and the problem of indistinguishable larvae
84
Speeding up identification: the use of SNP-based probes
85
Identification of prey in predator guts
86
Forensic investigations
88
DNA bareodíng:
towards an inventory of life
89
Sex
90
Bits of individuals: non-invasive sampling
92
Molecular identification methods: an appraisal
96
Protein analysis
97
DNA
analysis
97
Summary
98
Review articles
99
Detailed contents
e
4
Behavioural ecology
101
Introduction
101
From monogamy to promiscuity
102
Animal mating systems
102
Use of single locus profiling
103
Determining unknown mating systems
105
Lekking
106
Sexual dimorphism and male dominance
108
Dominance hierarchies
109
Female reproductive behaviour
110
Sperm competition
111
Why is female promiscuity adaptive?
112
Mate choice and the MHC
114
Sexual conflict
116
Sex ratio biases in offspring
117
Cooperative behaviour
118
Cooperative breeding in birds
118
Social insects
119
Cheating tactics
121
Interspecific brood parasitism
121
Intraspecific brood parasitism
122
Foraging and dispersal
123
Foraging
123
Dispersal
124
Behavioural ly mediated speciation
127
Summary
134
Review articles
135
5
Population genetics
136
Introduction
136
Genetic diversity in natural populations
137
Some basic concepts
137
Population size and genetic diversity
139
Mammalian examples of population size and genetic diversity estimates
143
Effective population size
146
Genetic estimators of effective population size
146
Detailed contents
Population bottlenecks and expansions
150
The significance of population bottlenecks
150
Genetic tests for population bottlenecks
150
Founder effects and population expansions
153
Population structure
154
Assessing where subdivisions occur
154
Statistical tests for historical population structure
156
Marker selection for the study of population subdivision
158
The genetics of metapopulations
161
Metapopulations
161
Testing whether metapopulations exist
162
Distinguishing different types of metapopulations
163
Gene flow and migration rates
165
Genetic estimation of gene flow and migration rates
165
Isolation-by-distance
166
Maximum likelihood methods for estimating migration rates
170
Identification of immigrants
172
Landscape genetics: bringing it all together
173
Molecular markers for population genetics: an appraisal
174
The basis for choice
175
Fundamental tests
176
Summary
177
Review articles
178
6
Molecular and adaptive variation
183
Introduction
183
Neutral markers that are not really neutral
186
Allozymes
186
Nuclear
DNA
markers
188
Mitochondrial
DNA 189
Heterozygosity and fitness
190
Background
190
Allozyme studies
191
DNA
markers
192
Molecular approaches to understanding adaptive variation
195
Comparisons of neutral and adaptive variation
195
Variation at specific loci
196
Gene mapping
199
Quantitative traits and adaptive variation
200
Detailed contents
Genomics and the study of adaptive variation
203
Summary
206
Review articles
206
7
Phylogeography
209
Introduction
209
Molecular markers in phylogeography
210
Early phylogeography
210
MtDNA as the standard phylogeographic tool
213
Alternatives to mtDNA
213
Genealogies and the coalescent process
214
Genetic variation in space
216
Geographic patterns in single populations
216
Vicariance and dispersal
218
Divergence between populations: drift versus gene flow
220
Gene flow between species
221
Genetic consequences of the Pleistocene ice ages
221
Phylogeography and coevolution
224
Statistical methods in phylogeography
227
Genetic variation in time
229
Geological events and molecular divergence rates
229
Measuring lineage divergence in real time
230
Applied phylogeography
233
Taxonomic
decisions
233
Determining a species' natural range
235
Finding the source populations of introduced species
239
Phylogeography and adaptive traits
242
Summary
244
Review articles and books
244
8
Conservation genetics
247
Introduction
247
The state of the biosphere
248
Molecular genetics in conservation biology
250
Genetic diversity as a conservation issue
251
Inbreeding and genetic load
253
The basis of inbreeding effects
253
Inbreeding depression and genetic load in the wild
256
Detailed contents
Purging of genetic load
257
Outbreeding depression
259
Genetic restoration
259
Desperate measures
263
Plant conservation
263
Animal conservation
266
Wildlife forensics
268
Genetics in conservation biology
-
a wider role
269
Systematics and conservation genetics
269
Phylogeography and conservation genetics
271
Conservation management and genetics
273
Globally important areas of genetic diversity
274
Molecular markers in conservation genetics
274
Summary
275
Review articles and books
275
9
Microbial ecology and the metagenome
278
Microbial diversity and the metagenomes
278
Outstanding issues in microbial ecology
280
The role of microbial communities in nature
280
Problems of species identification
283
Population dyanmics and community structure
284
Immunological approaches to microbial ecology
285
Immunological methods
285
Use of antibody identification in microbial ecology
288
Ribosomal genes and microbial ecology: the start of metagenomics
291
Structure and usefulness of ribosomal genes
291
Identification: the use of sequence-specific oligonucleotide probes in
microbial ecology
293
New developments, problems, and alternative approaches with probes
294
Ribosomal gene sequencing and community studies
297
Genetic profiling of microbial communities
299
Alternatives to ribosomal genes in profiling approaches
302
Genome approaches to microbial ecology
307
Sequence complexity and microbial diversity
307
Microarrays and microbial ecology
308
Metagenomics as an evolving discipline
309
Viral diversity
311
Detailed contents
Overview of microbial molecular ecology
312
Molecular markers for microbial ecology: an appraisal
313
Protein methods
313
Nucleic acid methods
314
Summary
314
Review articles
315
10
Genetically modified organisms
317
Introduction
317
Environmental risks from GMOs
319
The role of molecular ecology in GMO research
321
Horizontal gene transfer in nature
322
Conjugation
323
Transduction
325
Transformation
325
Effects of GMOs on natural communities
326
Transfer of genes from GMOs to other organisms
328
Vertical gene transfer
328
Horizontal gene transfer
331
Effects of introduced genes on other species
333
Future GMO research and molecular markers
336
Summary
338
Review articles
339
Glossary
341
Answers
347
References
357
Index
391 |
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author | Beebee, Trevor J. C. Rowe, Graham |
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genre | 1\p (DE-588)4123623-3 Lehrbuch gnd-content |
genre_facet | Lehrbuch |
id | DE-604.BV023049063 |
illustrated | Illustrated |
index_date | 2024-07-02T19:23:53Z |
indexdate | 2024-07-09T21:09:48Z |
institution | BVB |
isbn | 9780199292059 |
language | English |
oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-016252466 |
oclc_num | 244813441 |
open_access_boolean | |
owner | DE-19 DE-BY-UBM DE-M49 DE-BY-TUM DE-20 DE-355 DE-BY-UBR DE-703 DE-634 DE-11 DE-188 DE-384 |
owner_facet | DE-19 DE-BY-UBM DE-M49 DE-BY-TUM DE-20 DE-355 DE-BY-UBR DE-703 DE-634 DE-11 DE-188 DE-384 |
physical | XV, 400 S. Ill., graph. Darst., Kt. |
publishDate | 2008 |
publishDateSearch | 2008 |
publishDateSort | 2008 |
publisher | Oxford Univ. Press |
record_format | marc |
spelling | Beebee, Trevor J. C. Verfasser aut An introduction to molecular ecology Trevor J. C. Beebee ; Graham Rowe 2. ed. Oxford [u.a.] Oxford Univ. Press 2008 XV, 400 S. Ill., graph. Darst., Kt. txt rdacontent n rdamedia nc rdacarrier Literaturverz. S. 357 - 389. - 3. Auflage unter dem Titel: Rowe, Graham: An introduction to molecular ecology Biologie moléculaire ram Écologie moléculaire Écologie moléculaire ram Écologie ram Ökologie (DE-588)4043207-5 gnd rswk-swf Molekularbiologie (DE-588)4039983-7 gnd rswk-swf 1\p (DE-588)4123623-3 Lehrbuch gnd-content Ökologie (DE-588)4043207-5 s Molekularbiologie (DE-588)4039983-7 s DE-604 Rowe, Graham Verfasser aut Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016252466&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis 1\p cgwrk 20201028 DE-101 https://d-nb.info/provenance/plan#cgwrk |
spellingShingle | Beebee, Trevor J. C. Rowe, Graham An introduction to molecular ecology Biologie moléculaire ram Écologie moléculaire Écologie moléculaire ram Écologie ram Ökologie (DE-588)4043207-5 gnd Molekularbiologie (DE-588)4039983-7 gnd |
subject_GND | (DE-588)4043207-5 (DE-588)4039983-7 (DE-588)4123623-3 |
title | An introduction to molecular ecology |
title_auth | An introduction to molecular ecology |
title_exact_search | An introduction to molecular ecology |
title_exact_search_txtP | An introduction to molecular ecology |
title_full | An introduction to molecular ecology Trevor J. C. Beebee ; Graham Rowe |
title_fullStr | An introduction to molecular ecology Trevor J. C. Beebee ; Graham Rowe |
title_full_unstemmed | An introduction to molecular ecology Trevor J. C. Beebee ; Graham Rowe |
title_short | An introduction to molecular ecology |
title_sort | an introduction to molecular ecology |
topic | Biologie moléculaire ram Écologie moléculaire Écologie moléculaire ram Écologie ram Ökologie (DE-588)4043207-5 gnd Molekularbiologie (DE-588)4039983-7 gnd |
topic_facet | Biologie moléculaire Écologie moléculaire Écologie Ökologie Molekularbiologie Lehrbuch |
url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016252466&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
work_keys_str_mv | AT beebeetrevorjc anintroductiontomolecularecology AT rowegraham anintroductiontomolecularecology |