Microbial activity in the rhizosphere:
Gespeichert in:
| Format: | Elektronisch E-Book |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Berlin [u.a.]
Springer
2006
|
| Schriftenreihe: | Soil Biology
7 |
| Schlagworte: | |
| Online-Zugang: | DE-355 Volltext Inhaltstext Inhaltsverzeichnis |
| Beschreibung: | 1 Online-Ressource |
| ISBN: | 9783540291824 9783540294207 |
| DOI: | 10.1007/3-540-29420-1 |
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Datensatz im Suchindex
| _version_ | 1828843448095997952 |
|---|---|
| adam_text |
K. G. MUKERJI
C.
MANOHARACHARY
J.
SINGH (EDS.)
MICROBIAL ACTIVITY
IN
THE RHIZOSPHERE
WITH 35 FIGURES
4Y SPRINGER
CONTENTS
1 RHIZOSPHERE BIOLOGY - AN OVERVIEW 1
CHAKRAVARTHULA MANOHARACHARY, KRISHNA
G.
MUKERJI
1.1
INTRODUCTION 1
1.2 SOILMICROBES 1
1.3 RHIZOSPHERE SOIL 3
1.3.1 RHIZOPLANE 7
1.3.2 ROOTEXUDATES 7
1.3.3 RHIZOSPHERE AND COMPOUNDS RELEASED BY ROOTS 8
1.4
DECOMPOSITION OF ORGANIC/INORGANIC COMPOUNDS
IN
RHIZOSPHERE 10
1.5 ROOT SENSING SIGNALS 11
1.6 CONCLUSIONS 11
REFERENCES 12
2 METHODS AND TECHNIQUES FOR ISOLATION, ENUMERATION
AND
CHARACTERIZATION OF RHIZOSPHERE MICROORGANISMS 17
NANDANAVANAM
RANGANAYAKI, KOLLURU
V.B.R.
TILAK,
CHAKRAVARTHULA
MANOHARACHARY, KRISHNA
G.
MUKERJI
2.1 INTRODUCTION 17
2.2 ISOLATION 18
2.2.1 SAMPLING 18
2.2.2 FUNGI 20
2.2.3 BACTERIA 22
2.2.4 ACTINOMYCETES 23
2.2.5 ALGAE 23
2.3 ENUMERATION 25
2.3.1 COUNTING 26
2.3.2 MICROSCOPY 26
2.3.3 MICROBIAL BIOMASS 27
2.3.4 IMMUNOLOGICAL DETECTION METHODS 29
2.3.5 MOLECULAR TECHNIQUES 30
VIII CONTENTS
2.4 MATHEMATICAL MODELING 31
2.4.1 MECHANISTIC MODELS 32
2.4.2 DESCRIPTIVE MODELS 33
2.4.3 ENUMERATION IN REAL TIME SYSTEMS 33
2.5 CONCLUSIONS 33
REFERENCES 34
3
ROOT EXUDATES AS DETERMINANT OF RHIZOSPHERIC
MICROBIAL
BIODIVERSITY 39
GEETA SINGH, KRISHNA
G.
MUKERJI
3.1
INTRODUCTION 39
3.2 COMPOSITION OF ROOT EXUDATES 41
3.3 FACTORS AFFECTING ROOT EXUDATES 41
3.4 ROLES OF ROOT EXUDATES 42
3.4.1 ROOT EXUDATES VS AMF 43
3.5 HOST INFLUENCE 44
3.5.1 DIVERSITY OF MICROBIAL POPULATIONS IN THE RHIZO
SPHERE
OF
DIFFERENT PLANT SPECIES 45
3.5.2 BACTERIAL POPULATION 45
3.5.3 EXUDATION IN GENETICALLY ENGINEERED PLANTS 47
3.6
CONCLUSIONS 48
REFERENCES 49
4 RHIZOSPHERE MICROBIAL COMMUNITY DYNAMICS 55
ROOPAM
KAPOOR,
KRISHNA
G.
MUKERJI
4.1
INTRODUCTION 55
4.2 ROOT-MICROBE COMMUNICATION 55
4.2.1 ROOT EXUDATES 56
4.2.2 MICROBIAL INTERACTIONS 56
4.2.3 SIGNALLING FACTORS 58
4.3 MICROBIAL DYNAMICS IN TERRESTRIAL ECOSYSTEM 58
4.4 SOIL MICROBIAL COMMUNITY IN RELATION TO PLANT DIVERSITY 59
4.5
MICROBIAL COMMUNITY AND PLANT GENOTYPE 60
4.5.1 TRANSGENICS EXPRESSING T
4
LYSOZYME 60
4.6
ATMOSPHERIC CARBON DIOXIDE 62
4.7 MICROBIAL COMMUNITY AND RHIZODEPOSITION 63
4.8 AGRONOMICAL REGIMES AND MICROBIAL DIVERSITY 63
4.8.1 CROP SEQUENCE 65
4.9 CONCLUSIONS 66
REFERENCES 66
CONTENTS IX
5 THE ROLE OF RHIZOTRONS AND MINIRHIZOTRONS IN EVALUATING
THE
DYNAMICS OF RHIZOPLANE-RHIZOSPHERE MICRO FLORA
7
1
BOBBIE
L.
MCMICHAEL, JOHN
C.
ZAK
5.1
INTRODUCTION 71
5.2 USE OF RHIZOTRONS AND MINIRHIZOTRONS IN ROOT RESEARCH 72
5.2.1
MINIRHIZOTRONS 73
5.2.2 DATA COLLECTION FROM RHIZOTRONS AND MINIRHIZOTRONS 75
5.3
ADVANTAGES AND DISADVANTAGES OF RHIZOTRONS
AND
MINIRHIZOTRONS 76
5.4 USE OF RHIZOTRONS AND MINIRHIZOTRONS IN RHIZOPLANE
AND
RHIZOSPHERE RESEARCH 78
5.5 MYCORRRHIZAE 78
5.6 SOIL BORNE PATHOGENS 82
5.7 ROOT SURFACE OR RHIZOPLANE PHENOMENA 82
5.8 CONCLUSIONS 84
REFERENCES 84
6 SIGNIFICANCE OF BACTERIA IN THE RHIZOSPHERE 89
DAVID
B.
NEHL, OLIVER
G.G.
KNOX
6.1
INTRODUCTION 89
6.2 FUNCTIONAL DIVERSITY OF RHIZOBACTERIA 90
6.2.1 SOIL STRUCTURE 91
6.2.2 PHOSPHATE SOLUBILISATION 92
6.2.3 NITROGEN CYCLING 93
6.2.4 SYMBIOSES BETWEEN PLANTS AND DIAZOTROPHIC
RHIZOBACTERIA
94
6.2.5 FREE-LIVING DIAZOTROPHIC RHIZOBACTERIA 95
6.2.6 THE SOIL FOOD WEB 97
6.2.7 INTERACTIONS AMONG RHIZOSPHERE MICROORGANISMS. 98
6.2.8
FUNCTIONAL FLUX IN THE RHIZOSPHERE 99
6.2.9 RHIZOBACTERIA ARE MODERATORS
AT
THE PLANT-SOIL INTERFACE 100
6.3 SELECTIVE ENRICHMENT AND DIVERSITY OF BACTERIA
IN
THE RHIZOSPHERE 101
6.3.1 COMPETITIVENESS OF RHIZOBACTERIA 102
6.3.2 SELECTIVE PLANT FACTORS 104
6.4 EVOLUTION OF THE RHIZOSPHERE 106
6.4.1 GENE FLOW IN THE RHIZOSPHERE 106
6.4.2 SELECTION PROCESSES IN THE RHIZOSPHERE 107
6.4.3 RHIZOBACTERIA AS DETERMINANTS OF PLANT DIVERSITY 109
6.5
CONCLUSIONS 109
REFERENCES 110
CONTENTS
INTERACTIONS AMONG BENEFICIAL MICROORGANISMS 121
ANIL
KUMAR SAXENA, RASIKA SHENDE, MINAKSHI
GROVER
7.1
INTRODUCTION 121
7.2 INTERACTION BETWEEN
RHIZOBIUM
AND PGPR 122
7.2.1
RHIZOBIUM
AND NODULATION PROMOTING RHIZOBACTERIA 122
7.2.2
RHIZOBIUM
AND BIOCONTROL AGENTS 124
7.3
INTERACTION BETWEEN AM FUNGI AND
RHIZOBIUM
126
7.3.1 INFLUENCE ON NODULATION AND NITROGEN FIXATION 126
7.3.2
SPECIFIC COMPATIBILITY AND YIELD 126
7.3.3 INTERACTION UNDER STRESS 128
7.4 INTERACTION OF
AM
FUNGI WITH PGPR 128
7.4.1 MYCORRHIZA DEVELOPMENT AND POPULATION DENSITY
OF
PGPR 128
7.4.2 INTERACTION OF AMF AND PGPR IN PLANT GROWTH
PROMOTION
129
7.5 CONCLUSIONS 131
REFERENCES 132
BACTERIAL COMMUNITY COMPOSITION AND ACTIVITY IN RHIZOSPHERE
OF
ROOTS COLONIZED BY ARBUSCULAR MYCORRHIZAL FUNGI 139
PETRA MARSCHNER,
SARI TIMONEN
8.1
INTRODUCTION 139
8.2 RHIZOSPHERE COLONIZATION BY BACTERIA 141
8.2.1 SOIL BACTERIA 141
8.2.2 PSEUDOMONADS 142
8.2.3 N
2
FIXING BACTERIA AND P SOLUBILIZERS 142
8.2.4
BIOLOGICAL CONTROL ORGANISMS 144
8.3 BACTERIAL COMMUNITY COMPOSITION 144
8.4 BACTERIAL ACTIVITY 147
8.5 EFFECTS OF BACTERIA ON AM FUNGI 148
8.6 BACTERIA IN AM FUNGI 148
8.7 CONCLUSIONS 149
REFERENCES 149
MYCORRHIZOSPHERE
CONCEPT
155
SARI
TIMONEN, PETRA MARSCHNER
9.1
INTRODUCTION 155
9.2 MYCORRHIZOSPHERE STRUCTURE 155
9.3 EVOLUTION AND OCCURRENCE OF MYCORRHIZOSPHERES 158
9.4
MYCORRHIZOSPHERES AS HABITATS 159
9.5 MICROORGANISMS INVOLVED IN FORMING MYCORRHIZOSPHERES . 160
9.5.1
MYCORRHIZAL FUNGI 161
CONTENTS XI
9.5.2 OTHER FUNGI 161
9.5.3 BACTERIA 162
9.5.4 ARCHAEA 164
9.5.5 PROTOZOA 164
9.6 ECOLOGICAL SIGNIFICANCE OF MYCORRHIZOSPHERES 165
9.7
CONCLUSIONS 167
REFERENCES 167
10 MOLECULAR TECHNIQUES FOR UNDERSTANDING THE MICROBIAL
COMMUNITY
STRUCTURE IN MYCORRHIZOSPHERE 173
PANKAJ KRISHNA, MONDEM
S.
REDDY, TULASI SATYANARAYANA
10.1
INTRODUCTION 173
10.2 CULTURE-DEPENDENT METHODS FOR IDENTIFICATION OF BACTERIA. 174
10.3
CULTURE-INDEPENDENT (MOLECULAR) METHODS 177
10.3.1 DETERMINATION OF THE DNA BASE RATIO
(MOLE
PERCENT G+C) 179
10.3.2 DNA:DNA HYBRIDIZATION 179
10.3.3 DNA:RRNA HYBRIDIZATION 180
10.3.4 RIBOSOMAL RNA (RRNA) AND SPACER REGION 180
10.3.5
AMPLIFICATION BY POLYMERASE CHAIN REACTION (PCR). 182
10.3.6
PRIMERS 183
10.3.7 RANDOM AMPLIFIED POLYMORPHIC DNA (RAPD) 185
10.3.8
AMPLIFICATION FRAGMENT LENGTH POLYMORPHISM
(AFLP)
186
10.3.9 RESTRICTION FRAGMENT LENGTH POLYMORPHISM (RFLP). 186
10.3.10
GRADIENT GEL ELECTROPHORESIS 187
10.3.11 TERMINAL RESTRICTION FRAGMENT LENGTH
POLYMORPHISM
(T-RFLP) 188
10.3.12 SCREENING OF LIBRARIES OF
AMPLIFIED
16S RDNA SEQUENCE 188
10.3.13 IN SITU HYBRIDIZATION 190
10.4 LIMITATION OF RDNA TECHNOLOGY 190
10.5 CONCLUSIONS 191
REFERENCES 192
11 ARBUSCULAR MYCORRHIZAL FUNGI AND THE FORM AND FUNCTIONING
OF
THE ROOT SYSTEM 199
DAVID ATKINSON
11.1
INTRODUCTION 199
11.2 AMF INFECTION AND WHOLE PLANT FUNCTIONING 200
11.3 AMF AND ROOT FORM AND FUNCTION 202
11.3.1 ROOT SYSTEM SIZE 204
XII CONTENTS
11.3.2 ROOT AND ROOT SYSTEM MORPHOLOGY 204
11.3.3 ROOT LONGEVITY 208
11.4 INFECTION AND ROOT FUNCTION 210
11.4.1 EFFECTS ON INFECTION 210
11.4.2 HYPHAE FUNCTIONING 211
11.5 AMF AND RESOURCE ACQUISITION 211
11.5.1 EFFECTS ON NUTRIENT UPTAKE FROM THE SOIL 212
11.5.2 AMF AND WATER RELATIONS 213
11.6 CONCLUSIONS 216
REFERENCES 217
12 FUNGAL RECOGNITION RESPONSES TO HOST DERIVED SIGNALS
BY
ARBUSCULAR MYCORRHIZAL FUNGI 223
CRISTIANA SBRANA
12.1
INTRODUCTION 223
12.2 AM FUNGAL LIFE CYCLE 224
12.3 CHEMOTROPIC RESPONSES 228
12.4 PRE-CONTACT HOST RECOGNITION 229
12.5 DOES NON-HOST SIGNALLING OCCUR? 234
12.6 SIGNALLING AT HOST CONTACT 235
12.7 CONCLUSIONS 238
REFERENCES 239
13
INTERACTIONS BETWEEN
ECTOMYCORRHIZAL
FUNGI
AND
RHIZOSPHERIC
MICROBES 245
MONDEM S. REDDY, TULASI SATYANARAYANA
13.1
INTRODUCTION 245
13.2 INTERACTION WITH MHBS 247
13.3 INHIBITORY EFFECTS 251
13.4 INTERACTIONS WITH PGPRS 254
13.5 INTERATIONS TO IMPROVE SOIL QUALITY 257
13.6 CONCLUSIONS 258
REFERENCES 258
14 ROLE OF BENEFICIAL MICROSYMBIONTS ON THE PLANT PERFORMANCE
AND
PLANT FITNESS 265
BORBALA
BIRD,
KRISZTINA KOVES-PICHY,
MEROPE
TSIMILLI-MICHAEL, RETO
J.
STRASSER
14.1
INTRODUCTION 265
14.2 MANAGING THE BENEFICIAL EFFECT OF MICROSYMBIONTS 266
14.2.1
ISOLATION AND SELECTION OF BENEFICIAL MICROSYMBIONTS 266
14.2.2
MICROCOSM EXPERIMENTS FOR THE INOCULATION STUDIES . 268
CONTENTS XIII
14.2.3 MICROPROPAGATED PLANTS AND MICROSYMBIONT
INOCULATIONS
269
14.3 ASSESSMENT OF PLANT PERFORMANCE AND PLANT FITNESS 270
14.3.1
PLANT PERFORMANCE PARAMETERS 270
14.3.2 PLANT FITNESS PARAMETERS 272
14.3.3 INTERPRETATION OF DATA 275
14.4 PLANT PERFORMANCE AND FITNESS
BY
MICROSYMBIONT CO-INOCULATIONS 276
14.4.1 ESTABLISHMENT OF INOCULATED MICROSYMBIONTS
IN
THE RHIZOSPHERE 277
14.4.2 PERFORMANCE OF MICROSYMBIONT INOCULATED PLANTS 280
14.4.3
PLANT PHYSIOLOGICAL PARAMETERS 284
14.5 CONCLUSIONS 291
REFERENCES 291
15 BACTERIA HELPING MYCORRHIZA DEVELOPMENT 297
ROBIN DUPONNOIS
15.1
INTRODUCTION 297
15.2 SETTING IN EVIDENCE MYCORRHIZA HELPER BACTERIA (MHB) 298
15.3
BIOLOGICAL PROPERTIES OF MHBS 300
15.4 MECHANISMS INVOLVED IN THE MHB EFFECT 303
15.5 APPLICATION OF MHBS 305
15.6 CONCLUSIONS 307
REFERENCES 307
16 RHIZOSPHERE REGULATION OF PREINFECTION
BEHAVIOR
OF OOMYCETE PLANT PATHOGENS 311
ERIC
B.
NELSON
16.1
INTRODUCTION 311
16.2 EXUDATE ELICITORS OF PATHOGEN RESPONSES TO PLANTS 312
16.3
OOMYCETE PATHOGENS 313
16.3.1
APHANOMYCES
SPECIES 314
16.3.2
PYTHIUM
SPECIES 319
16.3.3
PHYTOPHTHORA
SPECIES 327
16.4
CONCLUSIONS 332
REFERENCES 334
SUBJECT INDEX
345 |
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| genre | (DE-588)4143413-4 Aufsatzsammlung gnd-content |
| genre_facet | Aufsatzsammlung |
| id | DE-604.BV022884780 |
| illustrated | Not Illustrated |
| index_date | 2024-07-02T18:51:36Z |
| indexdate | 2025-04-08T14:03:43Z |
| institution | BVB |
| isbn | 9783540291824 9783540294207 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-016089710 |
| oclc_num | 762182369 |
| open_access_boolean | |
| owner | DE-355 DE-BY-UBR |
| owner_facet | DE-355 DE-BY-UBR |
| physical | 1 Online-Ressource |
| psigel | ZDB-2-SBL |
| publishDate | 2006 |
| publishDateSearch | 2006 |
| publishDateSort | 2006 |
| publisher | Springer |
| record_format | marc |
| series | Soil Biology |
| series2 | Soil Biology |
| spelling | Microbial activity in the rhizosphere K. G. Mukerji ... (eds.) Berlin [u.a.] Springer 2006 1 Online-Ressource txt rdacontent c rdamedia cr rdacarrier Soil Biology 7 Bodenmikrobiologie (DE-588)4659394-9 gnd rswk-swf Mikroorganismus (DE-588)4039226-0 gnd rswk-swf Bodenmikroorganismus (DE-588)4448560-8 gnd rswk-swf Rhizosphäre (DE-588)4049846-3 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Rhizosphäre (DE-588)4049846-3 s Bodenmikroorganismus (DE-588)4448560-8 s DE-604 Mikroorganismus (DE-588)4039226-0 s Bodenmikrobiologie (DE-588)4659394-9 s b DE-604 Mukerji, Krishna G. Sonstige (DE-588)122301277 oth Erscheint auch als Druck-Ausgabe, Hardcover 3-540-29182-2 Soil Biology 7 (DE-604)BV019353150 7 https://doi.org/10.1007/3-540-29420-1 Verlag Volltext text/html http://deposit.dnb.de/cgi-bin/dokserv?id=2682796&prov=M&dok_var=1&dok_ext=htm Verlag Inhaltstext DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016089710&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Microbial activity in the rhizosphere Soil Biology Bodenmikrobiologie (DE-588)4659394-9 gnd Mikroorganismus (DE-588)4039226-0 gnd Bodenmikroorganismus (DE-588)4448560-8 gnd Rhizosphäre (DE-588)4049846-3 gnd |
| subject_GND | (DE-588)4659394-9 (DE-588)4039226-0 (DE-588)4448560-8 (DE-588)4049846-3 (DE-588)4143413-4 |
| title | Microbial activity in the rhizosphere |
| title_auth | Microbial activity in the rhizosphere |
| title_exact_search | Microbial activity in the rhizosphere |
| title_exact_search_txtP | Microbial activity in the rhizosphere |
| title_full | Microbial activity in the rhizosphere K. G. Mukerji ... (eds.) |
| title_fullStr | Microbial activity in the rhizosphere K. G. Mukerji ... (eds.) |
| title_full_unstemmed | Microbial activity in the rhizosphere K. G. Mukerji ... (eds.) |
| title_short | Microbial activity in the rhizosphere |
| title_sort | microbial activity in the rhizosphere |
| topic | Bodenmikrobiologie (DE-588)4659394-9 gnd Mikroorganismus (DE-588)4039226-0 gnd Bodenmikroorganismus (DE-588)4448560-8 gnd Rhizosphäre (DE-588)4049846-3 gnd |
| topic_facet | Bodenmikrobiologie Mikroorganismus Bodenmikroorganismus Rhizosphäre Aufsatzsammlung |
| url | https://doi.org/10.1007/3-540-29420-1 http://deposit.dnb.de/cgi-bin/dokserv?id=2682796&prov=M&dok_var=1&dok_ext=htm http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=016089710&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV019353150 |
| work_keys_str_mv | AT mukerjikrishnag microbialactivityintherhizosphere |