System modeling in cell biology: from concepts to nuts and bolts
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Cambridge, Mass. [u.a.]
MIT Press
2006
|
| Schriftenreihe: | A Bradford book
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | "A Bradford book." Includes bibliographical references (p. [385]-433) and index |
| Beschreibung: | XIV, 448 S. Ill., graph. Darst. |
| ISBN: | 0262195488 |
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| 245 | 1 | 0 | |a System modeling in cell biology |b from concepts to nuts and bolts |c ed. by Zoltan Szallasi ... |
| 246 | 1 | 3 | |a System modeling in cellular biology |
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| 650 | 4 | |a Biological systems | |
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| 650 | 4 | |a Cells | |
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| 650 | 4 | |a Cytology |x Data processing | |
| 650 | 4 | |a Cytology |x Mathematical models | |
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Datensatz im Suchindex
| _version_ | 1804135772140339200 |
|---|---|
| adam_text | Contents
Preface
.................................
vii
I
GENERAL
CONCEPTS
1
1
The Role of Modeling in Systems Biology
............ 3
Douglas B.
Kell
and Joshua D. Knowles
2
Complexity and Robustness of Cellular Systems
........ 19
Jörg Stelling, Uwe Sauer, Francis
J.
Doyle
III,
and John Doyle
3
On Modules and Modularity
.................... 41
Zoltán Szállási,
Vipul Periwal, and
Jörg Stelling
II MODELING APPROACHES
51
4
Bayesian Inference of Biological Systems: The Logic of Biology
53
Vipul Periwal
5
Stoichiometric and Constraint-based Modeling
......... 73
Steffen Klamt
and
Jörg Stelling
6
Modeling Molecular Interaction Networks with Nonlinear
Ordinary Differential Equations
.................. 97
Emery D. Conrad and John J. Tyson
7
Qualitative Approaches to the Analysis of Genetic Regulatory
Networks
................................125
Hidde
de Jong
and
Delphine
Ropers
8
Stochastic Modeling of Intracellular Kinetics
..........149
Johan Paulsson
and
Johan
Elf
9
Kinetics in Spatially Extended Systems
............. 177
Karsten Kruse
and
Johan
Elf
Contents
III
MODELS
AND REALITY
199
10
Biological Data Acquisition for System Level Modeling
—
An Exercise in the Art of Compromise
..............201
Zoltán Szállási
11
Methods to Identify Cellular Architecture and Dynamics from
Experimental Data
.......................... 221
Rudiyanto Gunawan, Kapil G. Gadkar,
and Francis J. Doyle HI
12
Using Control Theory to Study Biology
.............243
Brian P. Ingalls,
Tau-
Ми
Yi, and Pablo
A. Iglesias
13
Synthetic Gene Regulatory Systems
............... 269
Mads Kcern and Ron Weiss
14
Multilevel Modeling in Systems Biology: From Cells to Whole
Organs
................................. 297
Denis Noble
IV COMPUTATIONAL MODELING
313
15
Computational Constraints on Modeling in Systems Biology
. 315
Vipul Periwal
16
Numerical Simulation for Biochemical Kinetics
.........331
Daniel T. Gillespie and Linda R. Petzold
17
Software Infrastructure for Effective Communication and Reuse
of Computational Models
...................... 355
Andrew Finney, Michael
Ниска,
Benjamin J.
Bornstein,
Sarah M. Keating, Bruce E. Shapiro, Joanne Matthews,
Ben L. Kovitz, Maria J. Schilstra, Akira Funahashi,
John Doyle, and Hiroaki Kitano
A Software Tools for Biological Modeling
..............379
References
...............................385
Contributors
.............................. 435
Index
.................................. 439
|
| adam_txt |
Contents
Preface
.
vii
I
GENERAL
CONCEPTS
1
1
The Role of Modeling in Systems Biology
. 3
Douglas B.
Kell
and Joshua D. Knowles
2
Complexity and Robustness of Cellular Systems
. 19
Jörg Stelling, Uwe Sauer, Francis
J.
Doyle
III,
and John Doyle
3
On Modules and Modularity
. 41
Zoltán Szállási,
Vipul Periwal, and
Jörg Stelling
II MODELING APPROACHES
51
4
Bayesian Inference of Biological Systems: The Logic of Biology
53
Vipul Periwal
5
Stoichiometric and Constraint-based Modeling
. 73
Steffen Klamt
and
Jörg Stelling
6
Modeling Molecular Interaction Networks with Nonlinear
Ordinary Differential Equations
. 97
Emery D. Conrad and John J. Tyson
7
Qualitative Approaches to the Analysis of Genetic Regulatory
Networks
.125
Hidde
de Jong
and
Delphine
Ropers
8
Stochastic Modeling of Intracellular Kinetics
.149
Johan Paulsson
and
Johan
Elf
9
Kinetics in Spatially Extended Systems
. 177
Karsten Kruse
and
Johan
Elf
Contents
III
MODELS
AND REALITY
199
10
Biological Data Acquisition for System Level Modeling
—
An Exercise in the Art of Compromise
.201
Zoltán Szállási
11
Methods to Identify Cellular Architecture and Dynamics from
Experimental Data
. 221
Rudiyanto Gunawan, Kapil G. Gadkar,
and Francis J. Doyle HI
12
Using Control Theory to Study Biology
.243
Brian P. Ingalls,
Tau-
Ми
Yi, and Pablo
A. Iglesias
13
Synthetic Gene Regulatory Systems
. 269
Mads Kcern and Ron Weiss
14
Multilevel Modeling in Systems Biology: From Cells to Whole
Organs
. 297
Denis Noble
IV COMPUTATIONAL MODELING
313
15
Computational Constraints on Modeling in Systems Biology
. 315
Vipul Periwal
16
Numerical Simulation for Biochemical Kinetics
.331
Daniel T. Gillespie and Linda R. Petzold
17
Software Infrastructure for Effective Communication and Reuse
of Computational Models
. 355
Andrew Finney, Michael
Ниска,
Benjamin J.
Bornstein,
Sarah M. Keating, Bruce E. Shapiro, Joanne Matthews,
Ben L. Kovitz, Maria J. Schilstra, Akira Funahashi,
John Doyle, and Hiroaki Kitano
A Software Tools for Biological Modeling
.379
References
.385
Contributors
. 435
Index
. 439 |
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| spelling | System modeling in cell biology from concepts to nuts and bolts ed. by Zoltan Szallasi ... System modeling in cellular biology Cambridge, Mass. [u.a.] MIT Press 2006 XIV, 448 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier A Bradford book "A Bradford book." Includes bibliographical references (p. [385]-433) and index Bio-informatica gtt Celbiologie gtt Datenverarbeitung Mathematisches Modell Biological systems Cell Physiological Phenomena Cells Cytology Computer simulation Cytology Data processing Cytology Mathematical models Models, Biological Molecular Biology methods Cytologie (DE-588)4070177-3 gnd rswk-swf Computersimulation (DE-588)4148259-1 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Cytologie (DE-588)4070177-3 s Computersimulation (DE-588)4148259-1 s b DE-604 Szallasi, Zoltan Sonstige oth Digitalisierung UB Bayreuth application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=015050557&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | System modeling in cell biology from concepts to nuts and bolts Bio-informatica gtt Celbiologie gtt Datenverarbeitung Mathematisches Modell Biological systems Cell Physiological Phenomena Cells Cytology Computer simulation Cytology Data processing Cytology Mathematical models Models, Biological Molecular Biology methods Cytologie (DE-588)4070177-3 gnd Computersimulation (DE-588)4148259-1 gnd |
| subject_GND | (DE-588)4070177-3 (DE-588)4148259-1 (DE-588)4143413-4 |
| title | System modeling in cell biology from concepts to nuts and bolts |
| title_alt | System modeling in cellular biology |
| title_auth | System modeling in cell biology from concepts to nuts and bolts |
| title_exact_search | System modeling in cell biology from concepts to nuts and bolts |
| title_exact_search_txtP | System modeling in cell biology from concepts to nuts and bolts |
| title_full | System modeling in cell biology from concepts to nuts and bolts ed. by Zoltan Szallasi ... |
| title_fullStr | System modeling in cell biology from concepts to nuts and bolts ed. by Zoltan Szallasi ... |
| title_full_unstemmed | System modeling in cell biology from concepts to nuts and bolts ed. by Zoltan Szallasi ... |
| title_short | System modeling in cell biology |
| title_sort | system modeling in cell biology from concepts to nuts and bolts |
| title_sub | from concepts to nuts and bolts |
| topic | Bio-informatica gtt Celbiologie gtt Datenverarbeitung Mathematisches Modell Biological systems Cell Physiological Phenomena Cells Cytology Computer simulation Cytology Data processing Cytology Mathematical models Models, Biological Molecular Biology methods Cytologie (DE-588)4070177-3 gnd Computersimulation (DE-588)4148259-1 gnd |
| topic_facet | Bio-informatica Celbiologie Datenverarbeitung Mathematisches Modell Biological systems Cell Physiological Phenomena Cells Cytology Computer simulation Cytology Data processing Cytology Mathematical models Models, Biological Molecular Biology methods Cytologie Computersimulation Aufsatzsammlung |
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