Computational molecular evolution:
Gespeichert in:
| 1. Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Oxford [u.a.]
Oxford Univ. Press
2006
|
| Ausgabe: | 1. publ. |
| Schriftenreihe: | Oxford series in ecology and evolution
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XVI, 357 S. graph. Darst. |
| ISBN: | 0198567022 0198566999 9780198566991 9780198567028 |
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| 100 | 1 | |a Yang, Ziheng |e Verfasser |4 aut | |
| 245 | 1 | 0 | |a Computational molecular evolution |c Ziheng Yang |
| 250 | |a 1. publ. | ||
| 264 | 1 | |a Oxford [u.a.] |b Oxford Univ. Press |c 2006 | |
| 300 | |a XVI, 357 S. |b graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 490 | 0 | |a Oxford series in ecology and evolution | |
| 650 | 4 | |a Évolution moléculaire - Informatique | |
| 650 | 4 | |a Évolution moléculaire - Modèles mathématiques | |
| 650 | 4 | |a Datenverarbeitung | |
| 650 | 4 | |a Mathematisches Modell | |
| 650 | 4 | |a Evolution, Molecular | |
| 650 | 4 | |a Models, Biological | |
| 650 | 4 | |a Molecular evolution |x Data processing | |
| 650 | 4 | |a Molecular evolution |x Mathematical models | |
| 650 | 0 | 7 | |a Bioinformatik |0 (DE-588)4611085-9 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Molekulare Evolution |0 (DE-588)4812902-1 |2 gnd |9 rswk-swf |
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Datensatz im Suchindex
| _version_ | 1804135610009518080 |
|---|---|
| adam_text | Contents
PART I: MODELLING MOLECULAR EVOLUTION
1 Models of nucleotide substitution
1.1
1.2
distance estimation
1.2.1
1.2.2
1.2.3
1.2.4
1.3
1.4
1.4.1
1.4.2
* 1.4.3
1.5
general models
1.5.1
1.5.2
1.6
1.6.1
1.6.2
1.7
2
2.1
2.2
2.2.1
2.2.2
2.2.3
2.3
2.3.1
xii · Contents
2.3.2
46
2.3.3
46
2.3.4
47
2.4
Models of codon substitution
48
2.5
Estimation of synonymous and nonsynonymous substitution rates
49
2.5.1
50
2.5.2
58
2.5.3
61
*2.5.4 Interpretation and a plethora of distances
62
•2.6
Numerical calculation of the transition-probability matrix
68
2.7
Exercises
70
PART II: PHYLOGENY RECONSTRUCTION
71
3
Phylogeny reconstruction: overview
73
3.1
Tree concepts
73
3.1.1
73
3.1.2
77
3.1.3
79
3.1.4
80
3.1.5
81
3.2
Exhaustive and heuristic tree search
82
3.2.1
82
3.2.2
83
3.2.3
84
3.2.4
87
3.2.5
89
3.3
Distance methods
89
3.3.1
90
3.3.2
92
3.4
Maximum parsimony
93
3.4.1
93
3.4.2
94
3.4.3
95
3.4.4
98
3.4.5
99
4
4.1
4.2
4.2.1
4.2.2
4.2.3
Contents · xiii
4.2.4
4.2.5
4.3
4.3.1
4.3.2
4.3.3
4.3.4
4.4
4.4.1
4.4.2
*4.4.3 Discrete morphological characters
4.4.4
*4.5 Numerical algorithms for maximum likelihood estimation
4.5.1
4.5.2
4.5.3
4.5.4
4.5.5
4.6
4.7
4.7.1
4.7.2
4.8
5
5.1
5.1.1
5.1.2
5.1.3
5.2
5.3
5.3.1
5.3.2
5.3.3
5.3.4
5.3.5
5.4
5.4.1
5.4.2
5.4.3
5.4.4
5.5
5.5.1
xiv · Contents
5.5.2 Potential
5.5.3
5.6
5.6.1
5.6.2
5.6.3
5.6.4
5.6.5
5.7
5.7.1
5.7.2
5.8
6
6.1
6.1.1
6.1.2
6.2
6.2.1
6.2.2
6.2.3
6.2.4
6.3
6.3.1
6.3.2
6.3.3
6.4
6.4.1
6.4.2
6.4.3
6.4.4
6.4.5
*6.5 Appendix: Tuffley and Steel s likelihood analysis of
one character
PART III: ADVANCED TOPICS
7
divergence times
7.1
7.2
7.2.1
7.2.2
Contents · xv
7.2.3
7.2.4
7.3
7.3.1
7.3.2
7.3.3
7.3.4
7.3.5
7.4
7.4.1
7.4.2
7.4.3
7.4.4
7.4.5
7.5
8
8.1
8.2
8.2.1
8.2.2
8.2.3
8.2.4
8.2.5
8.3
8.3.1
8.3.2
8.4
8.4.1
8.4.2
models
8.4.3
8.4.4
(MHC) locus
8.5
8.5.1
8.5.2
8.5.3
8.6
8.6.1
8.6.2
and ds
8.7
xvi ·
9
9.1
9.2
9.3
9.4
9.4.1
9.4.2
9.4.3
9.4.4
9.4.5
*9.4.6 The alias method for sampling from a discrete distribution
9.5
9.5.1
9.5.2
9.6
1
10.1
10.2
10.3
10.4
Appendices
A: Functions of random variables
В
C: Phylogenetics software
References
Index
|
| adam_txt |
Contents
PART I: MODELLING MOLECULAR EVOLUTION
1 Models of nucleotide substitution
1.1
1.2
distance estimation
1.2.1
1.2.2
1.2.3
1.2.4
1.3
1.4
1.4.1
1.4.2
* 1.4.3
1.5
general models
1.5.1
1.5.2
1.6
1.6.1
1.6.2
1.7
2
2.1
2.2
2.2.1
2.2.2
2.2.3
2.3
2.3.1
xii · Contents
2.3.2
46
2.3.3
46
2.3.4
47
2.4
Models of codon substitution
48
2.5
Estimation of synonymous and nonsynonymous substitution rates
49
2.5.1
50
2.5.2
58
2.5.3
61
*2.5.4 Interpretation and a plethora of distances
62
•2.6
Numerical calculation of the transition-probability matrix
68
2.7
Exercises
70
PART II: PHYLOGENY RECONSTRUCTION
71
3
Phylogeny reconstruction: overview
73
3.1
Tree concepts
73
3.1.1
73
3.1.2
77
3.1.3
79
3.1.4
80
3.1.5
81
3.2
Exhaustive and heuristic tree search
82
3.2.1
82
3.2.2
83
3.2.3
84
3.2.4
87
3.2.5
89
3.3
Distance methods
89
3.3.1
90
3.3.2
92
3.4
Maximum parsimony
93
3.4.1
93
3.4.2
94
3.4.3
95
3.4.4
98
3.4.5
99
4
4.1
4.2
4.2.1
4.2.2
4.2.3
Contents · xiii
4.2.4
4.2.5
4.3
4.3.1
4.3.2
4.3.3
4.3.4
4.4
4.4.1
4.4.2
*4.4.3 Discrete morphological characters
4.4.4
*4.5 Numerical algorithms for maximum likelihood estimation
4.5.1
4.5.2
4.5.3
4.5.4
4.5.5
4.6
4.7
4.7.1
4.7.2
4.8
5
5.1
5.1.1
5.1.2
5.1.3
5.2
5.3
5.3.1
5.3.2
5.3.3
5.3.4
5.3.5
5.4
5.4.1
5.4.2
5.4.3
5.4.4
5.5
5.5.1
xiv · Contents
5.5.2 Potential
5.5.3
5.6
5.6.1
5.6.2
5.6.3
5.6.4
5.6.5
5.7
5.7.1
5.7.2
5.8
6
6.1
6.1.1
6.1.2
6.2
6.2.1
6.2.2
6.2.3
6.2.4
6.3
6.3.1
6.3.2
6.3.3
6.4
6.4.1
6.4.2
6.4.3
6.4.4
6.4.5
*6.5 Appendix: Tuffley and Steel's likelihood analysis of
one character
PART III: ADVANCED TOPICS
7
divergence times
7.1
7.2
7.2.1
7.2.2
Contents · xv
7.2.3
7.2.4
7.3
7.3.1
7.3.2
7.3.3
7.3.4
7.3.5
7.4
7.4.1
7.4.2
7.4.3
7.4.4
7.4.5
7.5
8
8.1
8.2
8.2.1
8.2.2
8.2.3
8.2.4
8.2.5
8.3
8.3.1
8.3.2
8.4
8.4.1
8.4.2
models
8.4.3
8.4.4
(MHC) locus
8.5
8.5.1
8.5.2
8.5.3
8.6
8.6.1
8.6.2
and ds
8.7
xvi ·
9
9.1
9.2
9.3
9.4
9.4.1
9.4.2
9.4.3
9.4.4
9.4.5
*9.4.6 The alias method for sampling from a discrete distribution
9.5
9.5.1
9.5.2
9.6
1
10.1
10.2
10.3
10.4
Appendices
A: Functions of random variables
В
C: Phylogenetics software
References
Index |
| any_adam_object | 1 |
| any_adam_object_boolean | 1 |
| author | Yang, Ziheng |
| author_facet | Yang, Ziheng |
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| dewey-ones | 572 - Biochemistry |
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| dewey-sort | 3572.838015118 |
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| discipline | Biologie Informatik |
| discipline_str_mv | Biologie Informatik |
| edition | 1. publ. |
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| illustrated | Illustrated |
| index_date | 2024-07-02T15:32:29Z |
| indexdate | 2024-07-09T20:43:14Z |
| institution | BVB |
| isbn | 0198567022 0198566999 9780198566991 9780198567028 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-014965422 |
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| physical | XVI, 357 S. graph. Darst. |
| publishDate | 2006 |
| publishDateSearch | 2006 |
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| publisher | Oxford Univ. Press |
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| series2 | Oxford series in ecology and evolution |
| spelling | Yang, Ziheng Verfasser aut Computational molecular evolution Ziheng Yang 1. publ. Oxford [u.a.] Oxford Univ. Press 2006 XVI, 357 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Oxford series in ecology and evolution Évolution moléculaire - Informatique Évolution moléculaire - Modèles mathématiques Datenverarbeitung Mathematisches Modell Evolution, Molecular Models, Biological Molecular evolution Data processing Molecular evolution Mathematical models Bioinformatik (DE-588)4611085-9 gnd rswk-swf Molekulare Evolution (DE-588)4812902-1 gnd rswk-swf Molekulare Evolution (DE-588)4812902-1 s Bioinformatik (DE-588)4611085-9 s b DE-604 Digitalisierung UB Regensburg application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014965422&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Yang, Ziheng Computational molecular evolution Évolution moléculaire - Informatique Évolution moléculaire - Modèles mathématiques Datenverarbeitung Mathematisches Modell Evolution, Molecular Models, Biological Molecular evolution Data processing Molecular evolution Mathematical models Bioinformatik (DE-588)4611085-9 gnd Molekulare Evolution (DE-588)4812902-1 gnd |
| subject_GND | (DE-588)4611085-9 (DE-588)4812902-1 |
| title | Computational molecular evolution |
| title_auth | Computational molecular evolution |
| title_exact_search | Computational molecular evolution |
| title_exact_search_txtP | Computational molecular evolution |
| title_full | Computational molecular evolution Ziheng Yang |
| title_fullStr | Computational molecular evolution Ziheng Yang |
| title_full_unstemmed | Computational molecular evolution Ziheng Yang |
| title_short | Computational molecular evolution |
| title_sort | computational molecular evolution |
| topic | Évolution moléculaire - Informatique Évolution moléculaire - Modèles mathématiques Datenverarbeitung Mathematisches Modell Evolution, Molecular Models, Biological Molecular evolution Data processing Molecular evolution Mathematical models Bioinformatik (DE-588)4611085-9 gnd Molekulare Evolution (DE-588)4812902-1 gnd |
| topic_facet | Évolution moléculaire - Informatique Évolution moléculaire - Modèles mathématiques Datenverarbeitung Mathematisches Modell Evolution, Molecular Models, Biological Molecular evolution Data processing Molecular evolution Mathematical models Bioinformatik Molekulare Evolution |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014965422&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| work_keys_str_mv | AT yangziheng computationalmolecularevolution |