Plant epigenetics:
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Oxford, UK [u.a.]
Blackwell Publ.
2005
|
| Schriftenreihe: | Annual plant reviews
19 |
| Schlagworte: | |
| Online-Zugang: | Table of contents Inhaltsverzeichnis |
| Beschreibung: | Includes bibliographical references and index |
| Beschreibung: | XV, 283 S. Ill., graph. Darst. |
| ISBN: | 1405129778 9781405129770 |
Internformat
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| 245 | 1 | 0 | |a Plant epigenetics |c edited by Peter Meyer |
| 264 | 1 | |a Oxford, UK [u.a.] |b Blackwell Publ. |c 2005 | |
| 300 | |a XV, 283 S. |b Ill., graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 490 | 1 | |a Annual plant reviews |v 19 | |
| 500 | |a Includes bibliographical references and index | ||
| 505 | 8 | |a Transgene silencing / Ann Depicker, Matthew Sanders, and Peter Meyer -- RNA interference: double-stranded RNAs and the processing machinery / Jan M. Kooter -- RNA-directed DNA methylation / Marjori Matzke ... [et al.] -- Heterochromatin and the control of gene silencing in plants / G. Reuter, A. Fischer, and I. Hofmann -- When alleles meet: paramutation / Marieke Louwers, Max Haring, and Maike Stam -- Genomic imprinting in plants: a predominantly maternal affair / Ueli Grossniklaus -- Nucleolar dominance and rRNA gene dosage control: a paradigm for transcriptional regulation via an epigenetic on/off switch / Nuno Neves, Wanda Viegas and Craig S. Pikaard -- Virus induced gene silencing / Tamas Dalmay -- MicroRNAs: micro-managing the plant genome / Sandra K. Floyd and John L. Bowman. | |
| 650 | 4 | |a Plantes - Régulation génétique | |
| 650 | 4 | |a Épigénèse | |
| 650 | 4 | |a Plant genetic regulation | |
| 650 | 4 | |a Epigenesis | |
| 650 | 4 | |a Gene Expression Regulation, Plant | |
| 650 | 4 | |a Epigenesis, Genetic | |
| 650 | 4 | |a Gene Silencing | |
| 650 | 0 | 7 | |a Pflanzen |0 (DE-588)4045539-7 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Genexpression |0 (DE-588)4020136-3 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Epigenese |0 (DE-588)4152503-6 |2 gnd |9 rswk-swf |
| 655 | 7 | |0 (DE-588)4143413-4 |a Aufsatzsammlung |2 gnd-content | |
| 689 | 0 | 0 | |a Pflanzen |0 (DE-588)4045539-7 |D s |
| 689 | 0 | 1 | |a Epigenese |0 (DE-588)4152503-6 |D s |
| 689 | 0 | 2 | |a Genexpression |0 (DE-588)4020136-3 |D s |
| 689 | 0 | |C b |5 DE-604 | |
| 700 | 1 | |a Meyer, Peter |e Sonstige |4 oth | |
| 830 | 0 | |a Annual plant reviews |v 19 |w (DE-604)BV012859776 |9 19 | |
| 856 | 4 | |u http://www.loc.gov/catdir/toc/ecip058/2005005883.html |3 Table of contents | |
| 856 | 4 | 2 | |m OEBV Datenaustausch |q application/pdf |u http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014633708&sequence=000003&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |3 Inhaltsverzeichnis |
| 999 | |a oai:aleph.bib-bvb.de:BVB01-014633708 | ||
Datensatz im Suchindex
| _version_ | 1804135117937967104 |
|---|---|
| adam_text | CONTENTS CONTRIBUTORS XIII PREFACE XVI 1 TRANSGENE SILENCING 1 ANN
DEPICKER, MATTHEW SANDERS AND PETER MEYER 1.1 INTRODUCTION: VARIATION OF
TRANSGENE EXPRESSION 1 1.2 MOLECULAR MECHANISMS OF TRANSGENE SILENCING 2
1.2.1 TRANSCRIPTIONAL SILENCING 2 1.2.1.1 CHROMATIN REMODELLING 2
1.2.1.2 DNA METHYLATION 3 1.2.1.3 INTERACTIONS BETWEEN DNA AND HISTONE
METHYLATION FUNCTIONS 4 1.2.1.4 RNA SIGNALS FOR TRANSCRIPTIONAL
SILENCING 4 1.2.1.5 RNA-INDEPENDENT CHROMATIN MODIFICATION 5 1.2.2
POSTTRANSCRIPTIONAL SILENCING WITH DIFFERENT RNA DEGRADATION PATHWAYS 5
1.2.2.1 INITIATION 6 1.2.2.2 SEQUENCE-SPECIFIC DEGRADATION OF
SINGLE-STRANDED TARGET RNAS 7 1.2.2.3 RNA-DEPENDENT RNA POLYMERASES
INVOLVED IN SIGNAL GENERATION AND AMPLIFICATION 8 1.2.2.4 TRANSITIVE
SILENCING 9 1.2.2.5 THE ROLE OF DNA METHYLATION AND CHROMATIN
MODIFICATION IN RNA SILENCING 11 1.3 SYSTEMIC SILENCING 12 1.4 SILENCING
SIGNALS 13 1.4.1 THE TRANSGENE CONSTRUCT 14 1.4.2 THE IMPACT OF THE
TRANSGENE LOCUS STRUCTURE 15 1.4.3 RNA SILENCING INDUCED BY CONSTRUCTS
CARRYING INVERTED REPEATS (SEQUENCE HOMOLOGY AND REPEATS) 17 1.5
POSITION EFFECTS 17 1.6 ENVIRONMENTAL EFFECTS 19 VI CONTENTS 2.1
INTRODUCTION 33 2.2 MECHANISM OF RNA INTERFERENCE 34 2.3 SOURCES OF
DSRNA 36 2.3.1 TRANSGENE-ENCODED DSRNA 37 2.3.2 FORTUITOUS SYNTHESIS OF
TRANSGENE DSRNA 37 2.3.3 REGULATED AND INDUCIBLE RNAI 40 2.3.4 VIRAL
DSRNA AND VIRUS-INDUCED GENE SILENCING 41 2.3.5 ENDOGENOUS DSRNAS 43 2.4
THE PROTEIN MACHINERY OF RNAI 44 2.4.1 DOUBLE-STRANDED RNA-PROCESSING
ENZYMES: THE DCLS 44 2.4.1.1 WHAT IS KNOWN ABOUT PLANT DCLS? 47 2.4.2
DCL ACTIVITIES AND THE PRODUCTION OF DIFFERENT SIZE C1ASSES OF SIRNA 49
2.4.3 ARGONAUTE PROTEINS/PAZ AND PIWI DOMAIN (PPD) PROTEINS 50 2.4.3.1
THE PAZ DOMAIN 51 2.4.3.2 THE PIWI DOMAIN 51 2.4.4 MORE ABOUT PLANT
ARGONAUTES 53 2.4.5 RNA-DEPENDENT RNA POLYMERASES 55 2.4.5.1 RDR1 AND
RDR6: VIRUS-INDUCED RNAI AND S-PTGS 56 2.4.5.2 RDR2: A ROLE IN
EPIGENETICS 57 2.4.5.3 BIOCHEMICAL PROPERTIES OF RDRS 57 2.4.5.4 RDR
ACTIVITY: AMPLIFICATION AND TRANSITIVE RNAI 58 1.7 STRATEGIES FOR THE
PREVENTION OF TRANSGENE SILENCING 1.7.1 SELECTION OF SINGLE-COPY
TRANSGENES WITH NO REARRANGEMENT 1.7.2 SELECTION OF FAVOURABLE
INTEGRATION REGIONS 1.7.3 REACTIVATION OF SILENT TRANSGENES 1.7.4
SCAFFOLD/MATRIX ATTACHMENT REGIONS 1.7.5 THE USE OF SILENCING MUTANTS
1.7.6 TARGETED INTEGRATION OF TRANSGENES 1.8 CONC1USIONS 2 RNA
INTERFERENCE: DOUBLE-STRANDED RNAS AND THE PROCESSING MACHINERY JAN M.
KOOTER 21 21 22 22 22 23 23 25 33 CONTENTS VII 3 RNA-DIRECTED DNA
METHYLATION 69 MARJORI MATZKE, TATSUO KANNO, BRUNO HUETTEL, ESTELLE
JALIGOT, M. FLORIAN METTE, DAVID P. KREIL, LUCIA DAXINGER, PHILIPP
ROVINA, WERNER AUFSATZ AND ANTONIUS 1. M. MATZKE 3.1 INTRODUCTION 69
3.1.1 RNA INTERFERENCE 69 3.1.2 DISCOVERY AND CHARACTERISTICS OF
RNA-DIRECTED DNA METHYLATION 70 3.2 RNAI-MEDIATED PATHWAYS IN THE
NUCLEUS 71 3.2.1 RNAI-MEDIATED HETEROCHROMATIN FORMATION 72 3.2.2 RDDM
AND RNAI-MEDIATED HETEROCHROMATIN ASSEMBLY: ONE PATHWAY OR TWO? 73 3.3
MECHANISM OF RNA-DIRECTED DNA METHYLATION: RNA AND PROTEIN REQUIREMENTS
76 3.3.1 SYSTEMS USED FOR GENETIC ANALYSES OF RDDM AND TRANSCRIPTIONAL
SILENCING 76 3.3.2 STEPS IN THE RDDM PATHWAY 78 3.3.2.1 DOUBLE-STRANDED
RNA SYNTHESIS AND PROCESSING 78 3.3.2.2 DNA METHYLTRANSFERASES AND
HISTONE-MODIFYING ENZYMES 82 3.3.2.3 SNF2-LIKE CHROMATIN REMODELING
ATPASES AND DNA METHYLATION 86 3.4 RDDM IN OTHER ORGANISMS 90 3.4.1
PATTERN OF METHYLATION 90 3.4.2 RDDM MACHINERY 91 3.4.3 RNA-DIRECTED DNA
METHYLATION OF PROMOTERS IN HUMAN CELLS 92 3.5 HOW SHORT RNAS INTERACT
WITH A TARGET LOCUS: RNA-DNA OR RNA-RNA? 94 3.6 FUNCTIONS OF
RNA-DIRECTED DNA METHYLATION: GENOME DEFENSE, DEVELOPMENT, OTHERS? 95
3.7 CONCLUDING REMARKS 96 4 HETEROCHROMATIN AND THE CONTROL OF GENE
SILENCING IN PLANTS 106 G. REUTER, A. FISCHER AND I. HOFMANN 4.1
INTRODUCTION 106 4.2 CYTOLOGICAL, MOLECULAR AND GENETIC CHARACTERISTICS
OF HETEROCHROMATIN IN PLANTS 107 4.2.1 DISCOVERY OF HETEROCHROMATIN AND
DEFINING ITS CYTOLOGICAL CHARACTERISTICS 107 VIII CONTENTS 4.2.2
SEQUENCE CONTENT, CHROMOSOMAL AND GENOMIC ORGANISATION OF
HETEROCHROMATIN 110 4.2.3 HETEROCHROMATIN AND GENETIC RECOMBINATION 112
4.2.4 HETEROCHROMATIN AND GENE SILENCING IN POSITION EFFECT VARIEGATION
113 4.2.5 TRANSCRIPTIONAL GENE SILENCING BY HETEROCHROMATISATION 113 4.3
DNA AND HISTONE MODIFICATION IN PLANT HETEROCHROMATIN 117 4.3.1 SUVH
PROTEINS AND THE CONTROL OF HETEROCHROMATIC CHROMATIN DOMAINS 117 4.3.2
DNA METHYLATION AND THE EPIGENETIC CONTROL OF HETEROCHROMATIC DOMAINS
120 4.3.3 INTERDEPENDENCE OF HETEROCHROMATIC DNA AND HISTONE METHYLATION
122 4.4 EPIGENETIC INHERITANCE IN PLANTS AND HETEROCHROMATIN 124 5 WHEN
ALLELES MEET: PARAMUTATION 134 MARIEKE LOUWERS, MAX HARING AND MAIKE
STAM 5.1 INTRODUCTION 134 5.2 PARAMUTATION ACROSS KING DOMS 137 5.2.1
PARAMUTATION IN PLANTS 137 5.2.1.1 PARAMUTATION AT THE BL LOCUS IN MAIZE
137 5.2.1.2 PARAMUTATION AT THE PL L LOCUS IN MAIZE 138 5.2.1.3
PARAMUTATION AT THE SULFUREA LOCUS IN TOMATO 139 5.2.1.4 PARAMUTATION AT
THE TRANSGENIC AL LOCUS IN PETUNIA 140 5.2.1.5 TRANS- INACTIVATION AT
THE PAI LOCI IN ARABIDOPSIS 141 5.2.2 PARAMUTATION IN MAMMALS AND FUNGI
142 5.2.2.1 LOXP TRANS-SILENCING IN MICE 142 5.2.2.2 TRANS-NUCLEAR
INACTIVATION OF THE INFL GENE IN PHYTOPHTHORA INFESTANS 143 5.2.2.3
INTERCHROMOSOMAL DNA METHYLATION TRANSFER IN ASEOBOLUS IMMERSES 143 5.3
PARAMUTATION MODELS 144 5.3.1 RNA-BASED MODEL 144 5.3.1.1 SILENCING BY
DSRNA AND SIRNAS 145 5.3.1.2 SILENCING BY LANG RNAS 145 5.3.1.3 RNA
INVOLVEMENT IN PARAMUTATION 145 5.3.2 PAIRING-BASED MODEL 146 5.3.3
COMBINED MODEL 148 CONTENTS IX 5.4 COMMON FEATURES OF PARAMUTATION
PHENOMENA 148 5.4.1 INVOLVEMENT OF REPEATS 148 5.4.1.1 PARAMUTATION
INDUCED BY REPEATS 149 5.4.1.2 PARAMUTATION INDUCED BY SINGLE-COPY
SEQUENCES 151 5.4.2 SEQUENCE REQUIREMENTS FOR PARAMUTATION 151 5.4.3
INVOLVEMENT OF DNA METHYLATION AND CHROMATIN STRUCTURE 152 5.4.4
SECONDARY PARAMUTATION 153 5.4.5 STABILITY OF THE EPIGENETIC STATE 153
5.4.6 TIMING OF PARAMUTATION 155 5.5 TRANS-ACTING MUTATIONS AFFECTING
PARAMUTATION 157 5.5.1 MAIZE MUTATIONS AFFECTING PARAMUTATION 157 5.5.2
ARABIDOPSIS MUTATIONS AFFECTING TRANS-INACTIVATION 162 5.6 THE POSSIBLE
ROLES AND IMPLICATIONS OF PARAMUTATION 163 5.7 CONCLUDING REMARKS AND
FUTURE DIRECTIONS 164 6 GENOMIC IMPRINTING IN PLANTS: A PREDOMINANTLY
MATERNAL AFFAIR 174 UELI GROSSNIKLAUS 6.1 INTRODUCTION 174 6.2 PLANT
REPRODUCTION 174 6.2.1 GAMETOGENESIS AND DOUBLE FERTILIZATION 175 6.2.2
SEED DEVELOPMENT 175 6.3 THE NATURE OF GENOMIC IMPRINTING 177 6.3.1
PARENTAL EFFECTS AND THE DISCOVERY OF GENOMIC IMPRINTING 177 6.3.2
GENOMIC IMPRINTING AND GENE DOSAGE EFFECTS 178 6.3.3 GENOMIC IMPRINTING
AND ASYMMETRY OF PARENTAL GENE ACTIVITY 180 6.4 IMPRINTED GENES IN ZEA
MAYS AND ARABIDOPSIS THALIANA 182 6.4.1 IMPRINTED GENES AND POTENTIALLY
IMPRINTED GENES IN MAIZE 182 6.4.2 THE FIS CLASS OF GENES IN ARABIDOPSIS
183 6.4.3 THE MEA-FIE POLYCOMB GROUP COMPLEX 184 6.4.4 IMPRINTED GENES
AND POTENTIALLY IMPRINTED GENES IN ARABIDOPSIS 185 6.4.5 GENOMIC
IMPRINTING IN EMBRYO AND ENDOSPERM 186 6.5 MOLECULAR MECHANISMS OF
GENOMIC IMPRINTING 188 6.5.1 TRANS-ACTING FACTORS AFFECTING IMPRINTING
188 X CONTENTS 6.5.2 CIS-ACTING ELEMENTS INVOLVED IN IMPRINTING 6.6 ROLE
OF IMPRINTING IN PLANT DEVELOPMENT AND EVOLUTION 191 192 7 NUCLEOLAR
DOMINANCE AND RRNA GENE DOSAGE CONTROI: A PARADIGM FOR TRANSCRIPTIONAL
REGULATION VIA AN EPIGENETIC ON/OFF SWITCH 201 NUNO NEVES, WANDA VIEGAS
AND CRAIG S. PIKAARD 7.1 INTRODUCTION 201 7.2 RIBOSOMAL RNA GENE DOSAGE
CONTRAL 203 7.3 NUCLEOLAR DOMINANCE 205 7.4 DNA METHYLATION AND RRNA
GENE REGULATION 206 7.5 HISTONE MODIFICATIONS AND RRNA GENE REGULATION
208 7.5.1 HISTONE ACETYLATION 208 7.5.2 HISTONE METHYLATION 209 7.6
CONCERTED CHANGES IN DNA AND HISTONE METHYLATION COMPRISE AN ON/OFF
SWITCH 211 7.7 FUTURE STUDIES: IDENTIFYING GENES REQUIRED FOR THE
EPIGENETIC ON/OFF SWITCH 213 8 VIRUS-INDUCED GENE SILENCING 223 TAMAS
DALMAY 8.1 INTRODUCTION 223 8.1.1 TRANSGENE-TRIGGERED GENE SILENCING
TARGETS VIRUSES 223 8.1.2 VIRUSES TRIGGER PTGS 224 8.1.3 SYSTEMIC
SILENCING 225 8.2 VIRUS-INDUCED GENE SILENCING 227 8.2.1 MECHANISM OF
VIRUS-INDUCED GENE SILENCING 227 8.2.2 VIRUS VECTORS FOR GENE SILENCING
229 8.2.3 TRANSGENIE VIRUS-INDUCED GENE SILENCING 230 8.2.4 APPLICATION
OF VIRUS-INDUCED GENE SILENCING 231 8.2.4.1 IDENTIFICATION OF GENE
FUNCTION 231 8.2.4.2 ANALYSING THE FUNCTION OF DISEASE RESISTANCE GENES
231 8.3 VIRAL SUPPRESSORS OF GENE SILENCING 234 8.3.1 CHARACTERISATION
OF P19 AND HCPRA 235 8.3.2 SUPPRESSORS BREAK PATHOGEN-DERIVED RESISTANCE
236 8.3.3 APPLICATION OF VIRAL SUPPRESSORS OF GENE SILENCING 236 8.3.3.1
ANALYSING THE SILENCING MACHINERY 237 8.3.3.2 OVEREXPRESSION OF PROTEINS
237 CONTENTS XI 9 MICRORNAS: MICRO-MANAGING THE PLANT GENOME 244 SANDRA
K. FLOYD AND JOHN L. BOWMAN 9.1 ABSTRACT 244 9.2 DISCOVERY OF MIRNAS 244
9.3 MIRNAS VERSUS SIRNAS 245 9.4 BIOGENESIS OF MIRNAS: PRI-MIRNA,
PRE-MIRNA, MATURE MIRNAS 246 9.5 MIRNA NOMENCLATURE 248 9.6 MODES OF
GENE REGULATION BY MIRNAS: TRANSLATION VERSUS MRNA CLEAVAGE VERSUS
CHROMATIN 248 9.7 MIRNAS AND THEIR TARGETS 251 9.8 FUNCTIONAL
CHARACTERIZATION OF MIRNAS - CASE STUDIES 255 9.8.1 MIR165/166 AND CLASS
III HD-ZIP GENES 255 9.8.2 MIR319/JAWAND TCP GENES 258 9.8.3 MIR159 AND
MYB GENES 259 9.8.4 MIR164 AND CUC-LIKE NAC GENES 259 9.8.5 MIR172 AND
AP2 AND RELATED GENES 260 9.8.6 MIR170/171 AND HAM-LIKE GRAS GENES 261
9.8.7 MIR168 AND ARGONAUTEI AND MIR162 AND DICER-LIKEI 262 9.8.8 SUMMARY
263 9.9 EVOLUTION OF MIRNA-MEDIATED GENE REGULATION 264 9.9.1 WITHIN THE
PLANT KINGDOM 264 9.9.2 MIRNAS IN PLANTS VERSUS METAZOANS 266 INDEX 279
|
| adam_txt |
CONTENTS CONTRIBUTORS XIII PREFACE XVI 1 TRANSGENE SILENCING 1 ANN
DEPICKER, MATTHEW SANDERS AND PETER MEYER 1.1 INTRODUCTION: VARIATION OF
TRANSGENE EXPRESSION 1 1.2 MOLECULAR MECHANISMS OF TRANSGENE SILENCING 2
1.2.1 TRANSCRIPTIONAL SILENCING 2 1.2.1.1 CHROMATIN REMODELLING 2
1.2.1.2 DNA METHYLATION 3 1.2.1.3 INTERACTIONS BETWEEN DNA AND HISTONE
METHYLATION FUNCTIONS 4 1.2.1.4 RNA SIGNALS FOR TRANSCRIPTIONAL
SILENCING 4 1.2.1.5 RNA-INDEPENDENT CHROMATIN MODIFICATION 5 1.2.2
POSTTRANSCRIPTIONAL SILENCING WITH DIFFERENT RNA DEGRADATION PATHWAYS 5
1.2.2.1 INITIATION 6 1.2.2.2 SEQUENCE-SPECIFIC DEGRADATION OF
SINGLE-STRANDED TARGET RNAS 7 1.2.2.3 RNA-DEPENDENT RNA POLYMERASES
INVOLVED IN SIGNAL GENERATION AND AMPLIFICATION 8 1.2.2.4 TRANSITIVE
SILENCING 9 1.2.2.5 THE ROLE OF DNA METHYLATION AND CHROMATIN
MODIFICATION IN RNA SILENCING 11 1.3 SYSTEMIC SILENCING 12 1.4 SILENCING
SIGNALS 13 1.4.1 THE TRANSGENE CONSTRUCT 14 1.4.2 THE IMPACT OF THE
TRANSGENE LOCUS STRUCTURE 15 1.4.3 RNA SILENCING INDUCED BY CONSTRUCTS
CARRYING INVERTED REPEATS (SEQUENCE HOMOLOGY AND REPEATS) 17 1.5
POSITION EFFECTS 17 1.6 ENVIRONMENTAL EFFECTS 19 VI CONTENTS 2.1
INTRODUCTION 33 2.2 MECHANISM OF RNA INTERFERENCE 34 2.3 SOURCES OF
DSRNA 36 2.3.1 TRANSGENE-ENCODED DSRNA 37 2.3.2 FORTUITOUS SYNTHESIS OF
TRANSGENE DSRNA 37 2.3.3 REGULATED AND INDUCIBLE RNAI 40 2.3.4 VIRAL
DSRNA AND VIRUS-INDUCED GENE SILENCING 41 2.3.5 ENDOGENOUS DSRNAS 43 2.4
THE PROTEIN MACHINERY OF RNAI 44 2.4.1 DOUBLE-STRANDED RNA-PROCESSING
ENZYMES: THE DCLS 44 2.4.1.1 WHAT IS KNOWN ABOUT PLANT DCLS? 47 2.4.2
DCL ACTIVITIES AND THE PRODUCTION OF DIFFERENT SIZE C1ASSES OF SIRNA 49
2.4.3 ARGONAUTE PROTEINS/PAZ AND PIWI DOMAIN (PPD) PROTEINS 50 2.4.3.1
THE PAZ DOMAIN 51 2.4.3.2 THE PIWI DOMAIN 51 2.4.4 MORE ABOUT PLANT
ARGONAUTES 53 2.4.5 RNA-DEPENDENT RNA POLYMERASES 55 2.4.5.1 RDR1 AND
RDR6: VIRUS-INDUCED RNAI AND S-PTGS 56 2.4.5.2 RDR2: A ROLE IN
EPIGENETICS 57 2.4.5.3 BIOCHEMICAL PROPERTIES OF RDRS 57 2.4.5.4 RDR
ACTIVITY: AMPLIFICATION AND TRANSITIVE RNAI 58 1.7 STRATEGIES FOR THE
PREVENTION OF TRANSGENE SILENCING 1.7.1 SELECTION OF SINGLE-COPY
TRANSGENES WITH NO REARRANGEMENT 1.7.2 SELECTION OF FAVOURABLE
INTEGRATION REGIONS 1.7.3 REACTIVATION OF SILENT TRANSGENES 1.7.4
SCAFFOLD/MATRIX ATTACHMENT REGIONS 1.7.5 THE USE OF SILENCING MUTANTS
1.7.6 TARGETED INTEGRATION OF TRANSGENES 1.8 CONC1USIONS 2 RNA
INTERFERENCE: DOUBLE-STRANDED RNAS AND THE PROCESSING MACHINERY JAN M.
KOOTER 21 21 22 22 22 23 23 25 33 CONTENTS VII 3 RNA-DIRECTED DNA
METHYLATION 69 MARJORI MATZKE, TATSUO KANNO, BRUNO HUETTEL, ESTELLE
JALIGOT, M. FLORIAN METTE, DAVID P. KREIL, LUCIA DAXINGER, PHILIPP
ROVINA, WERNER AUFSATZ AND ANTONIUS 1. M. MATZKE 3.1 INTRODUCTION 69
3.1.1 RNA INTERFERENCE 69 3.1.2 DISCOVERY AND CHARACTERISTICS OF
RNA-DIRECTED DNA METHYLATION 70 3.2 RNAI-MEDIATED PATHWAYS IN THE
NUCLEUS 71 3.2.1 RNAI-MEDIATED HETEROCHROMATIN FORMATION 72 3.2.2 RDDM
AND RNAI-MEDIATED HETEROCHROMATIN ASSEMBLY: ONE PATHWAY OR TWO? 73 3.3
MECHANISM OF RNA-DIRECTED DNA METHYLATION: RNA AND PROTEIN REQUIREMENTS
76 3.3.1 SYSTEMS USED FOR GENETIC ANALYSES OF RDDM AND TRANSCRIPTIONAL
SILENCING 76 3.3.2 STEPS IN THE RDDM PATHWAY 78 3.3.2.1 DOUBLE-STRANDED
RNA SYNTHESIS AND PROCESSING 78 3.3.2.2 DNA METHYLTRANSFERASES AND
HISTONE-MODIFYING ENZYMES 82 3.3.2.3 SNF2-LIKE CHROMATIN REMODELING
ATPASES AND DNA METHYLATION 86 3.4 RDDM IN OTHER ORGANISMS 90 3.4.1
PATTERN OF METHYLATION 90 3.4.2 RDDM MACHINERY 91 3.4.3 RNA-DIRECTED DNA
METHYLATION OF PROMOTERS IN HUMAN CELLS 92 3.5 HOW SHORT RNAS INTERACT
WITH A TARGET LOCUS: RNA-DNA OR RNA-RNA? 94 3.6 FUNCTIONS OF
RNA-DIRECTED DNA METHYLATION: GENOME DEFENSE, DEVELOPMENT, OTHERS? 95
3.7 CONCLUDING REMARKS 96 4 HETEROCHROMATIN AND THE CONTROL OF GENE
SILENCING IN PLANTS 106 G. REUTER, A. FISCHER AND I. HOFMANN 4.1
INTRODUCTION 106 4.2 CYTOLOGICAL, MOLECULAR AND GENETIC CHARACTERISTICS
OF HETEROCHROMATIN IN PLANTS 107 4.2.1 DISCOVERY OF HETEROCHROMATIN AND
DEFINING ITS CYTOLOGICAL CHARACTERISTICS 107 VIII CONTENTS 4.2.2
SEQUENCE CONTENT, CHROMOSOMAL AND GENOMIC ORGANISATION OF
HETEROCHROMATIN 110 4.2.3 HETEROCHROMATIN AND GENETIC RECOMBINATION 112
4.2.4 HETEROCHROMATIN AND GENE SILENCING IN POSITION EFFECT VARIEGATION
113 4.2.5 TRANSCRIPTIONAL GENE SILENCING BY HETEROCHROMATISATION 113 4.3
DNA AND HISTONE MODIFICATION IN PLANT HETEROCHROMATIN 117 4.3.1 SUVH
PROTEINS AND THE CONTROL OF HETEROCHROMATIC CHROMATIN DOMAINS 117 4.3.2
DNA METHYLATION AND THE EPIGENETIC CONTROL OF HETEROCHROMATIC DOMAINS
120 4.3.3 INTERDEPENDENCE OF HETEROCHROMATIC DNA AND HISTONE METHYLATION
122 4.4 EPIGENETIC INHERITANCE IN PLANTS AND HETEROCHROMATIN 124 5 WHEN
ALLELES MEET: PARAMUTATION 134 MARIEKE LOUWERS, MAX HARING AND MAIKE
STAM 5.1 INTRODUCTION 134 5.2 PARAMUTATION ACROSS KING DOMS 137 5.2.1
PARAMUTATION IN PLANTS 137 5.2.1.1 PARAMUTATION AT THE BL LOCUS IN MAIZE
137 5.2.1.2 PARAMUTATION AT THE PL L LOCUS IN MAIZE 138 5.2.1.3
PARAMUTATION AT THE SULFUREA LOCUS IN TOMATO 139 5.2.1.4 PARAMUTATION AT
THE TRANSGENIC AL LOCUS IN PETUNIA 140 5.2.1.5 TRANS- INACTIVATION AT
THE PAI LOCI IN ARABIDOPSIS 141 5.2.2 PARAMUTATION IN MAMMALS AND FUNGI
142 5.2.2.1 LOXP TRANS-SILENCING IN MICE 142 5.2.2.2 TRANS-NUCLEAR
INACTIVATION OF THE INFL GENE IN PHYTOPHTHORA INFESTANS 143 5.2.2.3
INTERCHROMOSOMAL DNA METHYLATION TRANSFER IN ASEOBOLUS IMMERSES 143 5.3
PARAMUTATION MODELS 144 5.3.1 RNA-BASED MODEL 144 5.3.1.1 SILENCING BY
DSRNA AND SIRNAS 145 5.3.1.2 SILENCING BY LANG RNAS 145 5.3.1.3 RNA
INVOLVEMENT IN PARAMUTATION 145 5.3.2 PAIRING-BASED MODEL 146 5.3.3
COMBINED MODEL 148 CONTENTS IX 5.4 COMMON FEATURES OF PARAMUTATION
PHENOMENA 148 5.4.1 INVOLVEMENT OF REPEATS 148 5.4.1.1 PARAMUTATION
INDUCED BY REPEATS 149 5.4.1.2 PARAMUTATION INDUCED BY SINGLE-COPY
SEQUENCES 151 5.4.2 SEQUENCE REQUIREMENTS FOR PARAMUTATION 151 5.4.3
INVOLVEMENT OF DNA METHYLATION AND CHROMATIN STRUCTURE 152 5.4.4
SECONDARY PARAMUTATION 153 5.4.5 STABILITY OF THE EPIGENETIC STATE 153
5.4.6 TIMING OF PARAMUTATION 155 5.5 TRANS-ACTING MUTATIONS AFFECTING
PARAMUTATION 157 5.5.1 MAIZE MUTATIONS AFFECTING PARAMUTATION 157 5.5.2
ARABIDOPSIS MUTATIONS AFFECTING TRANS-INACTIVATION 162 5.6 THE POSSIBLE
ROLES AND IMPLICATIONS OF PARAMUTATION 163 5.7 CONCLUDING REMARKS AND
FUTURE DIRECTIONS 164 6 GENOMIC IMPRINTING IN PLANTS: A PREDOMINANTLY
MATERNAL AFFAIR 174 UELI GROSSNIKLAUS 6.1 INTRODUCTION 174 6.2 PLANT
REPRODUCTION 174 6.2.1 GAMETOGENESIS AND DOUBLE FERTILIZATION 175 6.2.2
SEED DEVELOPMENT 175 6.3 THE NATURE OF GENOMIC IMPRINTING 177 6.3.1
PARENTAL EFFECTS AND THE DISCOVERY OF GENOMIC IMPRINTING 177 6.3.2
GENOMIC IMPRINTING AND GENE DOSAGE EFFECTS 178 6.3.3 GENOMIC IMPRINTING
AND ASYMMETRY OF PARENTAL GENE ACTIVITY 180 6.4 IMPRINTED GENES IN ZEA
MAYS AND ARABIDOPSIS THALIANA 182 6.4.1 IMPRINTED GENES AND POTENTIALLY
IMPRINTED GENES IN MAIZE 182 6.4.2 THE FIS CLASS OF GENES IN ARABIDOPSIS
183 6.4.3 THE MEA-FIE POLYCOMB GROUP COMPLEX 184 6.4.4 IMPRINTED GENES
AND POTENTIALLY IMPRINTED GENES IN ARABIDOPSIS 185 6.4.5 GENOMIC
IMPRINTING IN EMBRYO AND ENDOSPERM 186 6.5 MOLECULAR MECHANISMS OF
GENOMIC IMPRINTING 188 6.5.1 TRANS-ACTING FACTORS AFFECTING IMPRINTING
188 X CONTENTS 6.5.2 CIS-ACTING ELEMENTS INVOLVED IN IMPRINTING 6.6 ROLE
OF IMPRINTING IN PLANT DEVELOPMENT AND EVOLUTION 191 192 7 NUCLEOLAR
DOMINANCE AND RRNA GENE DOSAGE CONTROI: A PARADIGM FOR TRANSCRIPTIONAL
REGULATION VIA AN EPIGENETIC ON/OFF SWITCH 201 NUNO NEVES, WANDA VIEGAS
AND CRAIG S. PIKAARD 7.1 INTRODUCTION 201 7.2 RIBOSOMAL RNA GENE DOSAGE
CONTRAL 203 7.3 NUCLEOLAR DOMINANCE 205 7.4 DNA METHYLATION AND RRNA
GENE REGULATION 206 7.5 HISTONE MODIFICATIONS AND RRNA GENE REGULATION
208 7.5.1 HISTONE ACETYLATION 208 7.5.2 HISTONE METHYLATION 209 7.6
CONCERTED CHANGES IN DNA AND HISTONE METHYLATION COMPRISE AN ON/OFF
SWITCH 211 7.7 FUTURE STUDIES: IDENTIFYING GENES REQUIRED FOR THE
EPIGENETIC ON/OFF SWITCH 213 8 VIRUS-INDUCED GENE SILENCING 223 TAMAS
DALMAY 8.1 INTRODUCTION 223 8.1.1 TRANSGENE-TRIGGERED GENE SILENCING
TARGETS VIRUSES 223 8.1.2 VIRUSES TRIGGER PTGS 224 8.1.3 SYSTEMIC
SILENCING 225 8.2 VIRUS-INDUCED GENE SILENCING 227 8.2.1 MECHANISM OF
VIRUS-INDUCED GENE SILENCING 227 8.2.2 VIRUS VECTORS FOR GENE SILENCING
229 8.2.3 TRANSGENIE VIRUS-INDUCED GENE SILENCING 230 8.2.4 APPLICATION
OF VIRUS-INDUCED GENE SILENCING 231 8.2.4.1 IDENTIFICATION OF GENE
FUNCTION 231 8.2.4.2 ANALYSING THE FUNCTION OF DISEASE RESISTANCE GENES
231 8.3 VIRAL SUPPRESSORS OF GENE SILENCING 234 8.3.1 CHARACTERISATION
OF P19 AND HCPRA 235 8.3.2 SUPPRESSORS BREAK PATHOGEN-DERIVED RESISTANCE
236 8.3.3 APPLICATION OF VIRAL SUPPRESSORS OF GENE SILENCING 236 8.3.3.1
ANALYSING THE SILENCING MACHINERY 237 8.3.3.2 OVEREXPRESSION OF PROTEINS
237 CONTENTS XI 9 MICRORNAS: MICRO-MANAGING THE PLANT GENOME 244 SANDRA
K. FLOYD AND JOHN L. BOWMAN 9.1 ABSTRACT 244 9.2 DISCOVERY OF MIRNAS 244
9.3 MIRNAS VERSUS SIRNAS 245 9.4 BIOGENESIS OF MIRNAS: PRI-MIRNA,
PRE-MIRNA, MATURE MIRNAS 246 9.5 MIRNA NOMENCLATURE 248 9.6 MODES OF
GENE REGULATION BY MIRNAS: TRANSLATION VERSUS MRNA CLEAVAGE VERSUS
CHROMATIN 248 9.7 MIRNAS AND THEIR TARGETS 251 9.8 FUNCTIONAL
CHARACTERIZATION OF MIRNAS - CASE STUDIES 255 9.8.1 MIR165/166 AND CLASS
III HD-ZIP GENES 255 9.8.2 MIR319/JAWAND TCP GENES 258 9.8.3 MIR159 AND
MYB GENES 259 9.8.4 MIR164 AND CUC-LIKE NAC GENES 259 9.8.5 MIR172 AND
AP2 AND RELATED GENES 260 9.8.6 MIR170/171 AND HAM-LIKE GRAS GENES 261
9.8.7 MIR168 AND ARGONAUTEI AND MIR162 AND DICER-LIKEI 262 9.8.8 SUMMARY
263 9.9 EVOLUTION OF MIRNA-MEDIATED GENE REGULATION 264 9.9.1 WITHIN THE
PLANT KINGDOM 264 9.9.2 MIRNAS IN PLANTS VERSUS METAZOANS 266 INDEX 279 |
| any_adam_object | 1 |
| any_adam_object_boolean | 1 |
| building | Verbundindex |
| bvnumber | BV021313183 |
| callnumber-first | Q - Science |
| callnumber-label | QK981 |
| callnumber-raw | QK981.4 |
| callnumber-search | QK981.4 |
| callnumber-sort | QK 3981.4 |
| callnumber-subject | QK - Botany |
| classification_rvk | WG 1940 |
| classification_tum | BIO 450f BIO 470f |
| contents | Transgene silencing / Ann Depicker, Matthew Sanders, and Peter Meyer -- RNA interference: double-stranded RNAs and the processing machinery / Jan M. Kooter -- RNA-directed DNA methylation / Marjori Matzke ... [et al.] -- Heterochromatin and the control of gene silencing in plants / G. Reuter, A. Fischer, and I. Hofmann -- When alleles meet: paramutation / Marieke Louwers, Max Haring, and Maike Stam -- Genomic imprinting in plants: a predominantly maternal affair / Ueli Grossniklaus -- Nucleolar dominance and rRNA gene dosage control: a paradigm for transcriptional regulation via an epigenetic on/off switch / Nuno Neves, Wanda Viegas and Craig S. Pikaard -- Virus induced gene silencing / Tamas Dalmay -- MicroRNAs: micro-managing the plant genome / Sandra K. Floyd and John L. Bowman. |
| ctrlnum | (OCoLC)58043334 (DE-599)BVBBV021313183 |
| dewey-full | 572.8/652 |
| dewey-hundreds | 500 - Natural sciences and mathematics |
| dewey-ones | 572 - Biochemistry |
| dewey-raw | 572.8/652 |
| dewey-search | 572.8/652 |
| dewey-sort | 3572.8 3652 |
| dewey-tens | 570 - Biology |
| discipline | Biologie |
| discipline_str_mv | Biologie |
| format | Book |
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| genre | (DE-588)4143413-4 Aufsatzsammlung gnd-content |
| genre_facet | Aufsatzsammlung |
| id | DE-604.BV021313183 |
| illustrated | Illustrated |
| index_date | 2024-07-02T13:56:38Z |
| indexdate | 2024-07-09T20:35:25Z |
| institution | BVB |
| isbn | 1405129778 9781405129770 |
| language | English |
| lccn | 2005005883 |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-014633708 |
| oclc_num | 58043334 |
| open_access_boolean | |
| owner | DE-M49 DE-BY-TUM DE-11 |
| owner_facet | DE-M49 DE-BY-TUM DE-11 |
| physical | XV, 283 S. Ill., graph. Darst. |
| publishDate | 2005 |
| publishDateSearch | 2005 |
| publishDateSort | 2005 |
| publisher | Blackwell Publ. |
| record_format | marc |
| series | Annual plant reviews |
| series2 | Annual plant reviews |
| spelling | Plant epigenetics edited by Peter Meyer Oxford, UK [u.a.] Blackwell Publ. 2005 XV, 283 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Annual plant reviews 19 Includes bibliographical references and index Transgene silencing / Ann Depicker, Matthew Sanders, and Peter Meyer -- RNA interference: double-stranded RNAs and the processing machinery / Jan M. Kooter -- RNA-directed DNA methylation / Marjori Matzke ... [et al.] -- Heterochromatin and the control of gene silencing in plants / G. Reuter, A. Fischer, and I. Hofmann -- When alleles meet: paramutation / Marieke Louwers, Max Haring, and Maike Stam -- Genomic imprinting in plants: a predominantly maternal affair / Ueli Grossniklaus -- Nucleolar dominance and rRNA gene dosage control: a paradigm for transcriptional regulation via an epigenetic on/off switch / Nuno Neves, Wanda Viegas and Craig S. Pikaard -- Virus induced gene silencing / Tamas Dalmay -- MicroRNAs: micro-managing the plant genome / Sandra K. Floyd and John L. Bowman. Plantes - Régulation génétique Épigénèse Plant genetic regulation Epigenesis Gene Expression Regulation, Plant Epigenesis, Genetic Gene Silencing Pflanzen (DE-588)4045539-7 gnd rswk-swf Genexpression (DE-588)4020136-3 gnd rswk-swf Epigenese (DE-588)4152503-6 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Pflanzen (DE-588)4045539-7 s Epigenese (DE-588)4152503-6 s Genexpression (DE-588)4020136-3 s b DE-604 Meyer, Peter Sonstige oth Annual plant reviews 19 (DE-604)BV012859776 19 http://www.loc.gov/catdir/toc/ecip058/2005005883.html Table of contents OEBV Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014633708&sequence=000003&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Plant epigenetics Annual plant reviews Transgene silencing / Ann Depicker, Matthew Sanders, and Peter Meyer -- RNA interference: double-stranded RNAs and the processing machinery / Jan M. Kooter -- RNA-directed DNA methylation / Marjori Matzke ... [et al.] -- Heterochromatin and the control of gene silencing in plants / G. Reuter, A. Fischer, and I. Hofmann -- When alleles meet: paramutation / Marieke Louwers, Max Haring, and Maike Stam -- Genomic imprinting in plants: a predominantly maternal affair / Ueli Grossniklaus -- Nucleolar dominance and rRNA gene dosage control: a paradigm for transcriptional regulation via an epigenetic on/off switch / Nuno Neves, Wanda Viegas and Craig S. Pikaard -- Virus induced gene silencing / Tamas Dalmay -- MicroRNAs: micro-managing the plant genome / Sandra K. Floyd and John L. Bowman. Plantes - Régulation génétique Épigénèse Plant genetic regulation Epigenesis Gene Expression Regulation, Plant Epigenesis, Genetic Gene Silencing Pflanzen (DE-588)4045539-7 gnd Genexpression (DE-588)4020136-3 gnd Epigenese (DE-588)4152503-6 gnd |
| subject_GND | (DE-588)4045539-7 (DE-588)4020136-3 (DE-588)4152503-6 (DE-588)4143413-4 |
| title | Plant epigenetics |
| title_auth | Plant epigenetics |
| title_exact_search | Plant epigenetics |
| title_exact_search_txtP | Plant epigenetics |
| title_full | Plant epigenetics edited by Peter Meyer |
| title_fullStr | Plant epigenetics edited by Peter Meyer |
| title_full_unstemmed | Plant epigenetics edited by Peter Meyer |
| title_short | Plant epigenetics |
| title_sort | plant epigenetics |
| topic | Plantes - Régulation génétique Épigénèse Plant genetic regulation Epigenesis Gene Expression Regulation, Plant Epigenesis, Genetic Gene Silencing Pflanzen (DE-588)4045539-7 gnd Genexpression (DE-588)4020136-3 gnd Epigenese (DE-588)4152503-6 gnd |
| topic_facet | Plantes - Régulation génétique Épigénèse Plant genetic regulation Epigenesis Gene Expression Regulation, Plant Epigenesis, Genetic Gene Silencing Pflanzen Genexpression Epigenese Aufsatzsammlung |
| url | http://www.loc.gov/catdir/toc/ecip058/2005005883.html http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=014633708&sequence=000003&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV012859776 |
| work_keys_str_mv | AT meyerpeter plantepigenetics |