Brassicas and legumes: from genome structure to breeding
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Berlin [u.a.]
Springer
2003
|
| Schriftenreihe: | Biotechnology in agriculture and forestry
52 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XX, 268 S. Ill., graph. Darst. |
| ISBN: | 3540427287 |
Internformat
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| 020 | |a 3540427287 |c alk. paper |9 3-540-42728-7 | ||
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| 245 | 1 | 0 | |a Brassicas and legumes |b from genome structure to breeding |c ed. by T. Nagata and S. Tabata |
| 264 | 1 | |a Berlin [u.a.] |b Springer |c 2003 | |
| 300 | |a XX, 268 S. |b Ill., graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 490 | 1 | |a Biotechnology in agriculture and forestry |v 52 | |
| 650 | 4 | |a Brassica |x Breeding | |
| 650 | 4 | |a Brassica |x Genome mapping | |
| 650 | 4 | |a Brassica |x genetics | |
| 650 | 4 | |a Breeding | |
| 650 | 4 | |a Fabaceae |x genetics | |
| 650 | 4 | |a Legumes |x Breeding | |
| 650 | 4 | |a Legumes |x Genome mapping | |
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| 700 | 1 | |a Nagata, Toshiyuki |e Sonstige |4 oth | |
| 700 | 1 | |a Tabata, Satoshi |e Sonstige |4 oth | |
| 830 | 0 | |a Biotechnology in agriculture and forestry |v 52 |w (DE-604)BV035362096 |9 52 | |
| 856 | 4 | 2 | |m SWB Datenaustausch |q application/pdf |u http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=010049329&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |3 Inhaltsverzeichnis |
| 999 | |a oai:aleph.bib-bvb.de:BVB01-010049329 | ||
Datensatz im Suchindex
| _version_ | 1804129621885583360 |
|---|---|
| adam_text | CONTENTS 1 INTRODUCTORY REMARKS TO BRASSICAS AND LEGUMES: FROM GENOME
STRUCTURE TO BREEDING T. N AGATA AND S. T ABATA REFERENCES . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . 1 2 GENOME ANALYSIS OF A FLOWERING PLANT, ARABIDOPSIS THALIANA T.
K ATO , E. A SAMIZU , Y. N AKAMURA , AND S. T ABATA 1 INTRODUCTION . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . 4 2 EST ANALYSES IN ARABIDOPSIS THALIANA . . . . . . . . . . . .
. . . . . . . . . . . 5 3 GENOME SEQUENCING . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . 6 4 CHARACTERIZATION OF
GENOMIC INFORMATION IN A. THALIANA . . . . . . . . . 7 5 LARGE-SCALE
FUNCTIONAL ANALYSES . . . . . . . . . . . . . . . . . . . . . . . . . .
. 9 5.1 PROFILING OF TRANSCRIPTION BY ARRAY TECHNOLOGIES . . . . . . . .
. . . . 9 5.2 ANALYSIS OF GENE FUNCTION BY SYSTEMATIC GENE DISRUPTION .
. . . . . . . . . . . . . . . . . . . . . . . . 11 5.3 ANALYSIS OF GENE
FUNCTION BY RNA-INTERFERENCE . . . . . . . . . . . 13 5.4 MAP-BASED
CLONING USING SNP AND INDEL MARKERS . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . 13 5.5 TILLING PROJECT . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . 14 5.6 PROTEOME
ANALYSIS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . 14 6 CONCLUSIONS AND PERSPECTIVES . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . 14 REFERENCES . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15 3 THE
SEQUENCE OF THE ARABIDOPSIS GENOME AS A TOOL FOR COMPARATIVE STRUCTURAL
GENOMICS IN BRASSICACEAE R. S CHMIDT , A. A CARKAN , K. B OIVIN , O. C
LARENZ , AND M. R OSSBERG 1 INTRODUCTION . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . 19 2 THE
ARABIDOPSIS GENOME . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . 21 3 THE ARABIDOPSIS GENOME SEQUENCE AS A TOOL FOR
COMPARATIVE GENETIC MAPPING . . . . . . . . . . . . . . . . . . 22 4 THE
ARABIDOPSIS GENOME SEQUENCE AS A TOOL FOR COMPARATIVE PHYSICAL MAPPING .
. . . . . . . . . . . . . . . . . 25 5 THE ARABIDOPSIS GENOME SEQUENCE
AS A TOOL FOR COMPARATIVE SEQUENCE ANALYSIS . . . . . . . . . . . . . .
. . . 28 X CONTENTS 6 CONCLUSIONS AND PERSPECTIVES . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . 31 7 PROTOCOLS . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
32 7.1 STANDARD MOLECULAR BIOLOGY TECHNIQUES . . . . . . . . . . . . . .
. . . . 32 7.2 GENETIC ANALYSES . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . 32 7.3 C. RUBELLA LIBRARY OF MBO I
FRAGMENTS . . . . . . . . . . . . . . . . . . . . 32 7.4 MAPPING
SEQUENCES ON THE ARABIDOPSIS CHROMOSOME MAPS . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . 33 7.5 IDENTIFICATION OF
COGNATE CDNAS . . . . . . . . . . . . . . . . . . . . . . . . 33 7.6
ISOLATION OF C. RUBELLA COSMID AND B. OLERACEA BAC CLONES . . . 33 7.7
SUBCLONING AND SEQUENCING . . . . . . . . . . . . . . . . . . . . . . .
. . . . . 33 REFERENCES . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . 34 4 APPLICATION OF
MOLECULAR MARKERS IN BRASSICA COENOSPECIES: COMPARATIVE MAPPING AND
TAGGING M. L AKSHMIKUMARAN , S. D AS , AND P.S. S RIVASTAVA 1
INTRODUCTION . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . 37 2 MOLECULAR MARKERS . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . 38 2.1
HYBRIDIZATION-BASED MARKERS . . . . . . . . . . . . . . . . . . . . . .
. . . . 38 2.2 AMPLIFICATION-BASED MARKERS . . . . . . . . . . . . . . .
. . . . . . . . . . . . 39 2.2.1 TARGET PCR . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . 39 2.2.2 ARBITRARILY PRIMED
PCR . . . . . . . . . . . . . . . . . . . . . . . . . . 39 3
APPLICATIONS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . 40 3.1 DEVELOPMENT OF LINKAGE MAPS . . . . . .
. . . . . . . . . . . . . . . . . . . 40 3.1.1 B. CAMPESTRIS AND B. RAPA
MAP . . . . . . . . . . . . . . . . . . . . . 42 3.1.2 B. NIGRA MAP . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 42
3.1.3 B. OLERACEA MAP . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . 42 3.1.4 B. NAPUS MAP . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . 43 3.1.5 B. JUNCEA MAP . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . 44 3.2
INVESTIGATION OF GENETIC RELATIONSHIPS AND EVOLUTION OF SPECIES . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . 44 3.3 COMPARATIVE MAPPING AND SYNTENY . . . . . . . . . . . . . . .
. . . . . . . 45 3.4 MAPPING OF TRAITS, MARKER-ASSISTED BREEDING AND
MAP-BASED CLONING . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . 47 3.4.1 BULKED SEGREGANT ANALYSIS (BSA) . . . . . . . . . . . .
. . . . . . 47 3.4.2 SEED COAT COLOR TRAIT . . . . . . . . . . . . . . .
. . . . . . . . . . . . . 51 3.4.3 MAPPING OF OTHER IMPORTANT TRAITS IN
BRASSICA . . . . . . . . 53 3.4.4 MAP-BASED CLONING . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . 56 4 CONCLUSIONS . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
57 REFERENCES . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . 58 5 THE MOLECULAR GENETIC BASIS OF
FLOWERING TIME VARIATION IN BRASSICA SPECIES T.C. O SBORN AND L. L UKENS
1 FLOWERING TIME VARIATION IN BRASSICA SPECIES . . . . . . . . . . . . .
. . . . 69 2 MAPPING FLOWERING TIME GENES . . . . . . . . . . . . . . .
. . . . . . . . . . . . . 71 CONTENTS XI 3 COMPARATIVE MAPPING BETWEEN
BRASSICA AND ARABIDOPSIS . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . 73 4 COMPARATIVE MAPPING TO IDENTIFY
CANDIDATE GENES FOR FLOWERING TIME . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . 74 4.1 TOP OF ARABIDOPSIS
CHROMOSOME V . . . . . . . . . . . . . . . . . . . . . . 76 4.1.1 CO AS
A CANDIDATE GENE . . . . . . . . . . . . . . . . . . . . . . . . . . 77
4.1.2 FLC AS A CANDIDATE GENE . . . . . . . . . . . . . . . . . . . . .
. . . . 78 4.2 CANDIDATE GENES IN OTHER REGIONS . . . . . . . . . . . .
. . . . . . . . . . 79 5 GENETIC REDUNDANCY AND VARIATION IN FLOWERING
TIME . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . 80 6 FUTURE RESEARCH NEEDS . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . 83 REFERENCES . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 84 6
QUANTITATIVE TRAIT LOCI FOR CLUBROOT RESISTANCE IN BRASSICA OLERACEA
R.E. V OORRIPS , M.C. J ONGERIUS , AND H.J. K ANNE 1 INTRODUCTION . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . 87 2 RESULTS . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . 90 2.1 RESISTANCE TESTS . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 90 2.2
MOLECULAR MARKERS . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . 90 2.3 CONSTRUCTION OF THE LINKAGE MAP . . . . . . . . .
. . . . . . . . . . . . . . 90 2.4 MAPPING QTLS FOR CLUBROOT RESISTANCE
. . . . . . . . . . . . . . . . . . 93 3 DISCUSSION . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 95
4 PROTOCOLS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . 98 4.1 PLANT MATERIAL . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 98 4.2
PATHOGEN . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . 99 4.3 RESISTANCE TESTS . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . 99 4.4 RFLP MARKERS . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
100 4.5 AFLP MARKERS . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . 101 4.6 LINKAGE ANALYSIS . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . 101 4.7 QUANTITATIVE
TRAIT LOCUS (QTL) ANALYSIS . . . . . . . . . . . . . . . . . . 101
REFERENCES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . 102 7 STRUCTURAL DIFFERENCES OF S LOCUS
BETWEEN BRASSICA OLERACEA AND BRASSICA RAPA T. N ISHIO AND K. S ATO 1
INTRODUCTION . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . 105 2 S -LOCUS GENES IN BRASSICA . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . 106 3 GENOMIC
ORGANIZATION OF THE S LOCUS . . . . . . . . . . . . . . . . . . . . . .
. 107 4 SRK, SLG , AND SP11 IN BRASSICACEAE SPECIES . . . . . . . . . .
. . . . . . . 108 5 DIFFERENCE OF S LOCUS BETWEEN B. OLERACEA AND B.
RAPA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . 109 6 CONCLUSION AND PROSPECTS . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . 111 REFERENCES . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . 111 XII CONTENTS 8 BRASSICA AND LEGUME CHROMOSOMES K. F UKUI 1
HISTORICAL PERSPECTIVES . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . 114 2 IDENTIFICATION AND CHARACTERIZATION OF PLANT
CHROMOSOMES BASED ON CONDENSATION PATTERN . . . . . . . . . . . . . . .
. . . . . . . . . . . . . 115 2.1 TWO TYPES OF PLANT CHROMOSOMES . . . .
. . . . . . . . . . . . . . . . . . . 115 2.2 IMAGE ANALYSIS METHODS FOR
CONDENSATION PATTERN . . . . . . . . . . 116 3 CASE HISTORIES OF
CHROMOSOME IDENTIFICATION AND DEVELOPMENT OF QUANTITATIVE CHROMOSOME
MAPS: BRASSICA AND ARABIDOPSIS . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . 117 3.1 BRASSICA CHROMOSOMES . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . 117 3.2 ARABIDOPSIS
CHROMOSOMES . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
119 4 CASE HISTORIES OF CHROMOSOME IDENTIFICATION AND DEVELOPMENT OF
QUANTITATIVE CHROMOSOME MAPS: GLYCINE AND LOTUS . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . 123 4.1 GLYCINE
CHROMOSOMES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . 123 4.2 LOTUS CHROMOSOMES . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . 125 5 MOLECULAR CYTOLOGY OF BRASSICA AND
LEGUMES . . . . . . . . . . . . . . . . . 128 5.1 PHYSICAL MAPPING OF
THE 45S RDNA LOCUS IN BRASSICA AND LEGUMES . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . 128 5.2 MAPPING GENES ON BRASSICA AND
LEGUME CHROMOSOMES BY ADVANCED FISH METHODS . . . . . . . . . . . . . .
. . . . . . . . . . . . . 130 5.3 IDENTIFICATION OF THE GENOMIC ORIGIN
OF BRASSICA CHROMOSOMES BY GENOMIC IN SITU HYBRIDIZATION . . . . . . . .
. . . 132 6 FUTURE PERSPECTIVES . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . 134 7 PROTOCOLS . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
134 7.1 PREPARATIONS OF BRASSICA AND LEGUME CHROMOSOMES . . . . . . . .
134 7.2 PREPARATION OF EXTENDED DNA FIBERS (EDFS) . . . . . . . . . . .
. . 135 7.3 CHARACTERIZATION OF CONDENSED AND DISPERSED CHROMOSOMAL
REGIONS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
135 7.4 IMAGE ANALYSIS OF THE CONDENSATION PATTERNS FOR CONSTRUCTION OF
QUANTITATIVE CHROMOSOME MAPS . . . . . . . . 136 7.5 FLUORESCENCE IN
SITU HYBRIDIZATION . . . . . . . . . . . . . . . . . . . . . . 137 7.5.1
PROBE PREPARATION . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . 137 7.5.2 HYBRIDIZATION . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . 137 7.5.3 IMAGE ANALYSIS . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . 138 REFERENCES . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . 138 9 SEQUENCE ANALYSIS OF THE LOTUS JAPONICUS GENOME S. S ATO
, E. A SAMIZU , AND S. T ABATA 1 INTRODUCTION . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 142 2 EST
ANALYSIS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . 143 3 GENOME SEQUENCING . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . 144 3.1 GENOMIC
LIBRARIES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . 144 3.2 CLONE SELECTION AND SEQUENCING . . . . . . . . . . . . .
. . . . . . . . . . . 145 CONTENTS XIII 3.3 GENE ASSIGNMENT . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 145 3.4
CHARACTERISTIC FEATURES OF THE GENOME AND GENES IN L. JAPONICUS . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . 146 3.4.1 GENOME
FEATURES . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
146 3.4.2 FUNCTIONAL ASSIGNMENT AND CHARACTERISTIC FEATURES OF THE
POTENTIAL PROTEIN-ENCODING GENES . . . . . . . . . . . . . 147 4 LINKAGE
MAPPING . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . 149 5 CHLOROPLAST GENOME . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . 150 6 CONCLUSIONS . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. 151 REFERENCES . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . 152 10 INTRODUCTION OF AN EARLY
FLOWERING ACCESSION *MIYAKOJIMA* MG-20 TO MOLECULAR GENETICS IN LOTUS
JAPONICUS M. K AWAGUCHI AND R. N ISHIMURA 1 INTRODUCTION . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
155 2 SEARCH OF THE EARLY-FLOWERING PLANT THAT ENABLES INDOOR GENETICS .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . 156 3 AN INBRED LINE *MIYAKOJIMA* MG-20-S7 AND ITS PHENOTYPIC
TRAITS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
158 4 MIYAKOJIMA MG-20 AS A SUITABLE CROSSING PARTNER OF GIFU . . . . .
. . 159 5 SEGREGATION ANALYSES OF ASTRAY ( LJSYM77 ) MUTANT USING SNPS
FOUND IN GIFU*MIYAKOJIMA GENOME SEQUENCES . . . . . . . . . . . 160 6
CURRENT DEVELOPMENTS CONCERNING L. JAPONICUS MIYAKOJIMA MG-20 IN
GENOMICS AND MOLECULAR GENETICS OF LEGUMES . . . . . . . . 163 7 FUTURE
PROSPECTS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . 163 8 PROTOCOLS . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . 164 8.1 GROWTH
CONDITIONS FOR L. JAPONICUS MIYAKOJIMA MG-20 . . . . . 164 8.2 DCAPS
ANALYSIS USING SNPS FOUND IN GIFU*MIYAKOJIMA GENOMIC SEQUENCES . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 164 REFERENCES
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . 165 11 GENETIC LINKAGE MAP OF THE MODEL LEGUME LOTUS
JAPONICUS K. H ARADA , M. H AYASHI , S. S ATO , AND M. H AYASHI 1
INTRODUCTION . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . 167 2 CONSTRUCTION OF THE LINKAGE MAP . . . .
. . . . . . . . . . . . . . . . . . . . . . . 168 2.1 PLANT MATERIALS
AND DNA ISOLATION . . . . . . . . . . . . . . . . . . . . . . 168 2.2
AFLP ANALYSIS . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . 168 2.3 GENERATION OF SSR AND DCAPS MARKERS . . . . .
. . . . . . . . . . . . . 169 2.4 OTHER PCR-BASED MARKERS . . . . . . .
. . . . . . . . . . . . . . . . . . . . . 171 2.5 LINKAGE MAP
CONSTRUCTION . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
172 2.6 CHARACTERISTICS OF AFLP MARKERS ON THE MAP . . . . . . . . . . .
. . . 173 2.7 PCR-BASED MARKERS DERIVED FROM TAC CLONES . . . . . . . .
. . . . 173 2.8 DEVELOPMENT OF A LINKAGE MAP . . . . . . . . . . . . . .
. . . . . . . . . . . 173 XIV CONTENTS 3 CONCLUSION AND PERSPECTIVES . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 180 REFERENCES
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . 181 12 CONSTRUCTION OF HIGH-DENSITY MAP, GENOME
LIBRARY, AND SATURATION MAPPING OF NODULATION GENES S. K AWASAKI , Y. M
URAKAMI , H. I MAIZUMI- A NRAKU , AND I. M IKAMI 1 INTRODUCTION . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . 183 2 CONSTRUCTION OF A HIGH QUALITY BAC LIBRARY OF LOTUS
JAPONICUS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . 185 3 HEGS AND ITS APPLICATION FOR LOTUS JAPONICUS
GENOME ANALYSIS . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . 187 3.1 HEGS: HIGH EFFICIENCY GENOME SCANNING . .
. . . . . . . . . . . . . . 187 3.2 SATURATION TAGGING OF TARGET GENES .
. . . . . . . . . . . . . . . . . . . . . 188 3.3 PHYLOGENY ANALYSIS OF
ACCESSIONS OF LOTUS JAPONICUS AND LOTUS FILICAULIS . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . 190 3.4 RAPID
CONSTRUCTION OF HIGH-DENSITY MAPS AND THEIR APPLICATION TO QTL ANALYSES
. . . . . . . . . . . . . . . . . . . . . . . . . . 193 3.5 IDENTIFYING
THE CLONES FROM THE HEGS/AFLP MARKERS . . . . . . 196 4 TOWARD
CONSTRUCTION OF A PHYSICAL MAP COVERING THE TOTAL GENOME OF LOTUS
JAPONICUS . . . . . . . . . . . . . . . . . . . . . . . . 199 5
CONCLUSION AND FUTURE PERSPECTIVES . . . . . . . . . . . . . . . . . . .
. . . . . . 199 6 PROTOCOLS . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . 200 REFERENCES . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . 201 13 GENOME ANALYSIS OF MESORHIZOBIUM LOTI : A SYMBIOTIC
PARTNER TO LOTUS JAPONICUS T. K ANEKO , K. S AEKI , AND K. M INAMISAWA 1
INTRODUCTION . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . 203 2 BIOLOGY OF MESORHIZOBIUM LOTI . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . 204 3 GENOME STRUCTURE
OF MESORHIZOBIUM LOTI MAFF303099 . . . . . . . . . 207 4 SIMILARITY TO
SINORHIZOBIUM MELILOTII GENES . . . . . . . . . . . . . . . . . . . 209
5 AN ORGANIZED COSMID LIBRARY/DATABASE OF MESORHIZOBIUM LOTI . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 211 6
CONCLUDING REMARKS . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . 213 REFERENCES . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . 214 14 MOLECULAR
LINKAGE MAP OF THE MODEL LEGUME MEDICAGO TRUNCATULA GAERTN. P. T HOQUET
, A. K ERESZT , J.M. P ROSPERI , AND T. H UGUET 1 INTRODUCTION . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . 217 2 PARENTAL LINES . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . 218 3 METHODOLOGY . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 219
CONTENTS XV 3.1 PLANT MATERIAL . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . 219 3.2 DNA ISOLATION AND MARKER
TYPING . . . . . . . . . . . . . . . . . . . . . . 220 3.3 MAP
CONSTRUCTION . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . 221 3.4 GENE MAPPING . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . 221 4 CONSTRUCTION OF AN F2 GENETIC
MAP . . . . . . . . . . . . . . . . . . . . . . . . . 221 5 ALIGNMENT OF
M. SATIVA AND M. TRUNCATULA GENETIC MAPS . . . . . . . . . 224 6 GENETIC
MAPPING OF TRAITS OF INTEREST . . . . . . . . . . . . . . . . . . . . .
. . . 224 7 CONCLUSION AND FUTURE PERSPECTIVES . . . . . . . . . . . . .
. . . . . . . . . . . . 225 REFERENCES . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 225 15 GENETIC
MAPPING OF SEED AND NODULE PROTEIN MARKERS IN DIPLOID ALFALFA ( MEDICAGO
SATIVA ) P. K ALO , K. F ELFOELDI , A. S ERES , G. E NDRE , AND G.B. K
ISS 1 INTRODUCTION . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . 228 2 RESULTS AND DISCUSSION . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . 229 2.1
CHARACTERIZATION OF STORAGE PROTEINS IN DIPLOID ALFALFA BY 2-D PAGE . .
. . . . . . . . . . . . . . . . . . . . . . 229 2.2 GENETIC MAPPING
STRATEGY OF SEED PROTEINS . . . . . . . . . . . . . . . 232 2.3 GENETIC
MAPPING OF THE MEDICAGINS . . . . . . . . . . . . . . . . . . . . . 237
2.4 GENETIC MAPPING OF ALFINS AND OTHER STORAGE PROTEINS OF THE S-1 AND
S-2 FRACTIONS . . . . . . . . . . . . . . . . . . . . . . . . . . . .
238 2.5 GENETIC MAPPING OF NONSTORAGE SEED PROTEINS . . . . . . . . . .
. . . 239 2.6 MAPPING OF NODULE PROTEINS . . . . . . . . . . . . . . . .
. . . . . . . . . . . 239 3 CONCLUSION AND FUTURE PERSPECTIVES . . . . .
. . . . . . . . . . . . . . . . . . . . 240 4 PROTOCOLS . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . 240 4.1 PLANT MATERIAL . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . 240 4.2 PROTEIN EXTRACTION FROM ALFALFA
SEEDS . . . . . . . . . . . . . . . . . . . . 241 4.3 GEL
ELECTROPHORESIS OF PROTEIN SAMPLES . . . . . . . . . . . . . . . . . . .
241 4.4 STAINING OF THE 2-D GELS . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . 242 4.5 DNA ISOLATION AND HYBRIDIZATION . . . . .
. . . . . . . . . . . . . . . . . . 242 4.6 GENETIC MAPPING OF THE SEED
PROTEINS . . . . . . . . . . . . . . . . . . . . 243 REFERENCES . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . 243 16 MAPPING THE CHICKPEA ( C. ARIETINUM L.) GENOME:
LOCALIZATION OF FUNGAL RESISTANCE GENES IN INTERSPECIFIC CROSSES P. W
INTER , S. R AKSHIT , M. B AUM , AND G. K AHL 1 INTRODUCTION . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. 245 1.1 CHICKPEA: A MAJOR PLAYER WORLDWIDE . . . . . . . . . . . . . .
. . . . . . . 245 1.2 STAGNANT CHICKPEA YIELDS: A CASE FOR DNA MARKERS .
. . . . . . . . 245 1.3 THE CHICKPEA GENOME: MONOTONY RULES . . . . . .
. . . . . . . . . . . 246 1.4 MICROSATELLITES: IDEAL MARKERS FOR AN
INVARIABLE GENOME . . . . . 247 1.5 RECOMBINANT INBRED LINES (RILS):
MAPPING POPULATIONS OF CHOICE FOR CHICKPEA . . . . . . . . . . . . . .
248 XVI CONTENTS 2 THE GENETIC MAP OF CHICKPEA: MARKERS FOR ASCOCHYTA
BLIGHT AND FUSARIUM WILT RESISTANCE . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . 248 2.1 THE STMS PROGENITOR MAP . . . . . . . .
. . . . . . . . . . . . . . . . . . . . 248 2.2 THE MOST EXTENDED MAP OF
THE CHICKPEA GENOME: MAPPING OF RESISTANCES TO FUSARIUM RACES 4 AND 5 .
. . . . . . . . 249 2.2.1 THE GENOME MAP OF CHICKPEA: GENERAL FEATURES .
. . . . . 249 2.2.2 THE DISTRIBUTION OF MARKERS IS NOT RANDOM . . . . .
. . . . . 251 2.2.3 THE RELATION OF LINKED TO UNLINKED MARKERS VARIES
FOR DIFFERENT MARKER TYPES . . . . . . . . . . . . . . . . . . . . . . .
. 252 2.2.4 SEGREGATION DISTORTION AND RESIDUAL HETEROZYGOSITY . . . .
252 2.2.5 TAGGING OF FUSARIUM WILT RESISTANCE GENES . . . . . . . . . .
. 253 2.3 MAPPING OF QTL-1 FOR ASCOCHYTA BLIGHT RESISTANCE: STMS ARE
TRANSFERABLE AMONG POPULATIONS . . . . . . . . . . . . . . . 254 2.4
CONCLUSIONS AND PERSPECTIVES: TOWARD APPLICATION OF MARKER TECHNOLOGY
FOR MARKER-ASSISTED BREEDING . . . . . . . . 258 3 PROTOCOLS . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . 258 3.1 PLANT MATERIAL AND DNA ISOLATION . . . . . . . . . . . .
. . . . . . . . . . . 258 3.2 DETECTION OF POLYMORPHISM . . . . . . . .
. . . . . . . . . . . . . . . . . . . . 259 3.2.1 BULKED SEGREGANT
ANALYSIS (BSA) AND SELECTIVE GENOTYPING . . . . . . . . . . . . . . . .
. . . . . . . . . 260 3.3 LINKAGE ANALYSIS . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . 260 REFERENCES . . . . . . . .
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . 261 SUBJECT INDEX . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . . . . . . . . . . . . . . . . 265
|
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| illustrated | Illustrated |
| indexdate | 2024-07-09T19:08:03Z |
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| language | English |
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| physical | XX, 268 S. Ill., graph. Darst. |
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| series | Biotechnology in agriculture and forestry |
| series2 | Biotechnology in agriculture and forestry |
| spelling | Brassicas and legumes from genome structure to breeding ed. by T. Nagata and S. Tabata Berlin [u.a.] Springer 2003 XX, 268 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Biotechnology in agriculture and forestry 52 Brassica Breeding Brassica Genome mapping Brassica genetics Breeding Fabaceae genetics Legumes Breeding Legumes Genome mapping Züchtung (DE-588)4191075-8 gnd rswk-swf Hülsenfrüchtler (DE-588)4026066-5 gnd rswk-swf Kohl (DE-588)4191450-8 gnd rswk-swf (DE-588)4143413-4 Aufsatzsammlung gnd-content Kohl (DE-588)4191450-8 s Züchtung (DE-588)4191075-8 s DE-604 Hülsenfrüchtler (DE-588)4026066-5 s Nagata, Toshiyuki Sonstige oth Tabata, Satoshi Sonstige oth Biotechnology in agriculture and forestry 52 (DE-604)BV035362096 52 SWB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=010049329&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Brassicas and legumes from genome structure to breeding Biotechnology in agriculture and forestry Brassica Breeding Brassica Genome mapping Brassica genetics Breeding Fabaceae genetics Legumes Breeding Legumes Genome mapping Züchtung (DE-588)4191075-8 gnd Hülsenfrüchtler (DE-588)4026066-5 gnd Kohl (DE-588)4191450-8 gnd |
| subject_GND | (DE-588)4191075-8 (DE-588)4026066-5 (DE-588)4191450-8 (DE-588)4143413-4 |
| title | Brassicas and legumes from genome structure to breeding |
| title_auth | Brassicas and legumes from genome structure to breeding |
| title_exact_search | Brassicas and legumes from genome structure to breeding |
| title_full | Brassicas and legumes from genome structure to breeding ed. by T. Nagata and S. Tabata |
| title_fullStr | Brassicas and legumes from genome structure to breeding ed. by T. Nagata and S. Tabata |
| title_full_unstemmed | Brassicas and legumes from genome structure to breeding ed. by T. Nagata and S. Tabata |
| title_short | Brassicas and legumes |
| title_sort | brassicas and legumes from genome structure to breeding |
| title_sub | from genome structure to breeding |
| topic | Brassica Breeding Brassica Genome mapping Brassica genetics Breeding Fabaceae genetics Legumes Breeding Legumes Genome mapping Züchtung (DE-588)4191075-8 gnd Hülsenfrüchtler (DE-588)4026066-5 gnd Kohl (DE-588)4191450-8 gnd |
| topic_facet | Brassica Breeding Brassica Genome mapping Brassica genetics Breeding Fabaceae genetics Legumes Breeding Legumes Genome mapping Züchtung Hülsenfrüchtler Kohl Aufsatzsammlung |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=010049329&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV035362096 |
| work_keys_str_mv | AT nagatatoshiyuki brassicasandlegumesfromgenomestructuretobreeding AT tabatasatoshi brassicasandlegumesfromgenomestructuretobreeding |