Molecular evolution and phylogenetics:
Gespeichert in:
| Hauptverfasser: | , |
|---|---|
| Format: | Buch |
| Sprache: | English |
| Veröffentlicht: |
Oxford
Oxford Univ. Press
2000
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XIV, 333 S. graph. Darst. |
| ISBN: | 0195135849 0195135857 |
Internformat
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| 100 | 1 | |a Nei, Masatoshi |e Verfasser |4 aut | |
| 245 | 1 | 0 | |a Molecular evolution and phylogenetics |c Masatoshi Nei ; Sudhir Kumar |
| 264 | 1 | |a Oxford |b Oxford Univ. Press |c 2000 | |
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| 650 | 7 | |a Phylogeny |2 cabt | |
| 650 | 7 | |a Evolution |2 cabt | |
| 650 | 7 | |a Molecular Biology |2 cabt | |
| 650 | 7 | |a Evolução molecular |2 larpcal | |
| 650 | 7 | |a Filogenia |2 larpcal | |
| 650 | 7 | |a Fylogenese |2 gtt | |
| 650 | 4 | |a Génétique évolutive - Méthodes statistiques | |
| 650 | 7 | |a Moleculaire evolutie |2 gtt | |
| 650 | 7 | |a Statistische methoden |2 gtt | |
| 650 | 4 | |a Évolution moléculaire - Méthodes statistiques | |
| 650 | 4 | |a Statistik | |
| 650 | 4 | |a Evolution, Molecular |v Statistics | |
| 650 | 4 | |a Evolutionary genetics |x Statistical methods | |
| 650 | 4 | |a Molecular evolution |x Statistical methods | |
| 650 | 4 | |a Phylogeny |v Statistics | |
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Datensatz im Suchindex
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| adam_text |
MASATOSHI NEI PENNSYLVANIA STATE UNIVERSITY SUDHIR KUMAR ARIZONA STATE
UNIVERSITY OXJORD UNIVERSITY PRESS 2000 CONTENTS NUMERICAL EXAMPLES XIII
1 MOLECULAR BASIS OF EVOLUTION 3 1.1. EVOLUTIONARY TREE OF LIFE 3 1.2.
MECHANISM OF EVOLUTION 4 1.3. STRUCTURE AND FUNCTION OF GENES 5 1.4.
MUTATIONAL CHANGES OF DNA SEQUENCES 9 1.5. CODON USAGE 11 2 EVOLUTIONARY
CHANGE OF AMINO ACID SEQUENCES 17 2.1. AMINO ACID DIFFERENCES AND
PROPORTION OF DIFFERENT AMINO ACIDS 17 2.2. POISSON CORRECTION (PC) AND
GAMMA DISTANCES 19 2.3. BOOTSTRAP VARIANCES AND COVARIANCES 25 2.4.
AMINO ACID SUBSTITUTION MATRIX 27 2.5. MUTATION RATE AND SUBSTITUTION
RATE 29 3 EVOLUTIONARY CHANGE OF DNA SEQUENCES 33 3.1. NUCLEOTIDE
DIFFERENCES BETWEEN SEQUENCES 33 3.2. ESTIMATION OF THE NUMBER OF
NUCLEOTIDE SUBSTITUTIONS 35 3.3. GAMMA DISTANCES 43 3.4. NUMERICAL
ESTIMATION OF EVOLUTIONARY DISTANCES 45 3.5. ALIGNMENT OF NUCLEOTIDE
SEQUENCES 46 3.6. HANDLING OF SEQUENCE GAPS IN THE ESTIMATION OF
EVOLUTIONARY DISTANCES 49 4 SYNONYMOUS AND NONSYNONYMOUS NUCLEOTIDE
SUBSTITUTIONS 51 4.1. EVOLUTIONARY PATHWAY METHODS 52 4.2. METHODS BASED
ON KIMURA'S 2-PARAMETER MODEL 62 4.3. NUCLEOTIDE SUBSTITUTIONS AT
DIFFERENT CODON POSITIONS 67 4.4. LIKELIHOOD METHODS WITH CODON
SUBSTITUTION MODELS 69 CONTENTS 5 PHYLOGENETIC TREES 73 5.1. TYPES OF
PHYLOGENETIC TREES 73 5.2. TOPOLOGICAL DIFFERENCES 81 5.3. TREE-BUILDING
METHODS 83 6 PHYLOGENETIC INFERENCE: DISTANCE METHODS 87 6.1. UPGMA 87
6.2. LEAST SQUARES (LS) METHODS 92 6.3. MINIMUM EVOLUTION (ME) METHOD 99
6.4. NEIGHBOR JOINING (NJ) METHOD 103 6.5. DISTANCE MEASURES TO BE USED
FOR PHYLOGENETIC RECONSTRUCTION 111 7 PHYLOGENETIC INFERENCE: MAXIMUM
PARSIMONY METHODS 115 7.1. FINDING MAXIMUM PARSIMONY (MP) TREES 116 7.2.
STRATEGIES OF SEARCHING FOR MP TREES 122 7.3. CONSENSUS TREES 130 7.4.
ESTIMATION OF BRANCH LENGTHS 131 7.5. WEIGHTED PARSIMONY 133 7.6. MP
METHODS FOR PROTEIN DATA 138 7.7. SHARED DERIVED CHARACTERS 140 8
PHYLOGENETIC INFERENCE: MAXIMUM LIKELIHOOD METHODS 147 8.1.
COMPUTATIONAL PROCEDURE OF ML METHODS 147 8.2. MODELS OF NUCLEOTIDE
SUBSTITUTION 152 8.3. PROTEIN LIKELIHOOD METHODS 159 8.4. THEORETICAL
FOUNDATION OF ML METHODS 162 8.5. PARAMETER ESTIMATION FOR A GIVEN
TOPOLOGY 163 9 ACCURACIES AND STATISTICAL TESTS OF PHYLOGENETIC TREES
165 9.1. OPTIMIZATION PRINCIPLE AND TOPOLOGICAL ERRORS 165 9.2. INTERIOR
BRANCH TESTS 168 9.3. BOOTSTRAP TESTS 171 9.4. TESTS OF TOPOLOGICAL
DIFFERENCES 175 9.5. ADVANTAGES AND DISADVANTAGES OF DIFFERENT
TREE-BUILDING METHODS 178 10 MOLECULAR CLOCKS AND LINEARIZED TREES 187
10.1. MOLECULAR CLOCK HYPOTHESIS 187 10.2. RELATIVE RATE TESTS 191 10.3.
PHYLOGENETIC TESTS 196 10.4. LINEARIZED TREES 203 11 ANCESTRAL
NUCLEOTIDE AND AMINO ACID SEQUENCES 207 11.1. INFERENCE OF ANCESTRAL
SEQUENCES: PARSIMONY APPROACH 207 11.2. INFERENCE OF ANCESTRAL
SEQUENCES: BAYESIAN APPROACH 208 CONTENTS 11.3. SYNONYMOUS AND
NONSYNONYMOUS SUBSTITUTIONS IN ANCESTRAL BRANCHES 216 11.4. CONVERGENT
AND PARALLEL EVOLUTION 221 12 GENETIC POLYMORPHISM AND EVOLUTION 231
12.1. EVOLUTIONARY SIGNIFICANCE OF GENETIC POLYMORPHISM 231 12.2.
ANALYSIS OF ALLELE FREQUENCY DATA 233 12.3. GENETIC VARIATION IN
SUBDIVIDED POPULATIONS 236 12.4. GENETIC VARIATION FOR MANY LOCI 244
12.5. DNA POLYMORPHISM 250 12.6. STATISTICAL TESTS FOR DETECTING
SELECTION 258 13 POPULATION TREES FROM GENETIC MARKERS 265 13.1. GENETIC
DISTANCE FOR ALLELE FREQUENCY DATA 265 13.2. ANALYSIS OF DNA SEQUENCES
BY RESTRICTION ENZYMES 275 13.3. ANALYSIS OF RAPD DATA 285 14
PERSPECTIVES 291 14.1. STATISTICAL METHODS 291 14.2. GENOME PROJECTS 292
14.3. MOLECULAR BIOLOGY AND EVOLUTION 294 APPENDICES A. MATHEMATICAL
SYMBOLS AND NOTATIONS 297 B. GEOLOGICAL TIMESCALE 299 C. GEOLOGICAL
EVENTS IN THE CENOZOIC AND MESOZOIC ERAS 301 D. ORGANISMAL EVOLUTION
BASED ON THE FOSSIL RECORD 303 REFERENCES 305 INDEX 329 |
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| author | Nei, Masatoshi Kumar, Sudhir 1942- |
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| dewey-tens | 570 - Biology |
| discipline | Biologie |
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| indexdate | 2024-07-20T07:51:49Z |
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| isbn | 0195135849 0195135857 |
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| spelling | Nei, Masatoshi Verfasser aut Molecular evolution and phylogenetics Masatoshi Nei ; Sudhir Kumar Oxford Oxford Univ. Press 2000 XIV, 333 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Phylogeny cabt Evolution cabt Molecular Biology cabt Evolução molecular larpcal Filogenia larpcal Fylogenese gtt Génétique évolutive - Méthodes statistiques Moleculaire evolutie gtt Statistische methoden gtt Évolution moléculaire - Méthodes statistiques Statistik Evolution, Molecular Statistics Evolutionary genetics Statistical methods Molecular evolution Statistical methods Phylogeny Statistics Molekulargenetik (DE-588)4039987-4 gnd rswk-swf Phylogenie (DE-588)4076110-1 gnd rswk-swf Evolution (DE-588)4071050-6 gnd rswk-swf Statistik (DE-588)4056995-0 gnd rswk-swf Evolution (DE-588)4071050-6 s Molekulargenetik (DE-588)4039987-4 s Statistik (DE-588)4056995-0 s DE-604 Phylogenie (DE-588)4076110-1 s Kumar, Sudhir 1942- Verfasser (DE-588)109017587 aut HEBIS Datenaustausch Mainz application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=009022645&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Nei, Masatoshi Kumar, Sudhir 1942- Molecular evolution and phylogenetics Phylogeny cabt Evolution cabt Molecular Biology cabt Evolução molecular larpcal Filogenia larpcal Fylogenese gtt Génétique évolutive - Méthodes statistiques Moleculaire evolutie gtt Statistische methoden gtt Évolution moléculaire - Méthodes statistiques Statistik Evolution, Molecular Statistics Evolutionary genetics Statistical methods Molecular evolution Statistical methods Phylogeny Statistics Molekulargenetik (DE-588)4039987-4 gnd Phylogenie (DE-588)4076110-1 gnd Evolution (DE-588)4071050-6 gnd Statistik (DE-588)4056995-0 gnd |
| subject_GND | (DE-588)4039987-4 (DE-588)4076110-1 (DE-588)4071050-6 (DE-588)4056995-0 |
| title | Molecular evolution and phylogenetics |
| title_auth | Molecular evolution and phylogenetics |
| title_exact_search | Molecular evolution and phylogenetics |
| title_full | Molecular evolution and phylogenetics Masatoshi Nei ; Sudhir Kumar |
| title_fullStr | Molecular evolution and phylogenetics Masatoshi Nei ; Sudhir Kumar |
| title_full_unstemmed | Molecular evolution and phylogenetics Masatoshi Nei ; Sudhir Kumar |
| title_short | Molecular evolution and phylogenetics |
| title_sort | molecular evolution and phylogenetics |
| topic | Phylogeny cabt Evolution cabt Molecular Biology cabt Evolução molecular larpcal Filogenia larpcal Fylogenese gtt Génétique évolutive - Méthodes statistiques Moleculaire evolutie gtt Statistische methoden gtt Évolution moléculaire - Méthodes statistiques Statistik Evolution, Molecular Statistics Evolutionary genetics Statistical methods Molecular evolution Statistical methods Phylogeny Statistics Molekulargenetik (DE-588)4039987-4 gnd Phylogenie (DE-588)4076110-1 gnd Evolution (DE-588)4071050-6 gnd Statistik (DE-588)4056995-0 gnd |
| topic_facet | Phylogeny Evolution Molecular Biology Evolução molecular Filogenia Fylogenese Génétique évolutive - Méthodes statistiques Moleculaire evolutie Statistische methoden Évolution moléculaire - Méthodes statistiques Statistik Evolution, Molecular Statistics Evolutionary genetics Statistical methods Molecular evolution Statistical methods Phylogeny Statistics Molekulargenetik Phylogenie |
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