Genetics databases:
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
San Diego, Calif. [u.a.]
Acad. Press
1999
|
| Schriftenreihe: | Biological techniques
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XIV, 295 S. Ill., graph. Darst. |
| ISBN: | 0121016250 |
Internformat
MARC
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| 245 | 1 | 0 | |a Genetics databases |c ed. by Martin J. Bishop |
| 264 | 1 | |a San Diego, Calif. [u.a.] |b Acad. Press |c 1999 | |
| 300 | |a XIV, 295 S. |b Ill., graph. Darst. | ||
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| 650 | 7 | |a Code génétique |2 ram | |
| 650 | 7 | |a Código genético |2 larpcal | |
| 650 | 7 | |a DNA |2 gtt | |
| 650 | 7 | |a Databanken |2 gtt | |
| 650 | 7 | |a Eiwitten |2 gtt | |
| 650 | 4 | |a Expression génique | |
| 650 | 7 | |a Expressão gênica |2 larpcal | |
| 650 | 7 | |a Genen |2 gtt | |
| 650 | 4 | |a Genetic code - Computer network resources | |
| 650 | 7 | |a Genexpressie |2 gtt | |
| 650 | 7 | |a Genomas |2 larpcal | |
| 650 | 7 | |a Genética molecular |2 larpcal | |
| 650 | 4 | |a Génétique - Bases de données | |
| 650 | 4 | |a Génétique - Ressources Internet | |
| 650 | 7 | |a Kristalstructuur |2 gtt | |
| 650 | 7 | |a Mutação genética |2 larpcal | |
| 650 | 7 | |a Nucleotídeos |2 larpcal | |
| 650 | 7 | |a RNA |2 gtt | |
| 650 | 7 | |a Sequência do dna |2 larpcal | |
| 650 | 4 | |a Séquence des acides aminés | |
| 650 | 7 | |a code genetique |2 inriac | |
| 650 | 7 | |a sequencage |2 inriac | |
| 650 | 4 | |a Datenverarbeitung | |
| 650 | 4 | |a Amino acid sequence |v Databases | |
| 650 | 4 | |a Computer Communication Networks | |
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| 650 | 4 | |a Genetic Code | |
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Datensatz im Suchindex
| _version_ | 1804127569752096768 |
|---|---|
| adam_text | Contents
1 Introduction 1
M. Bishop
1.1 Internet resources 1
1.2 Organisms and proteins 2
1.3 Phenotypes and genotypes 4
1.4 Physical mapping 6
1.5 Expression profiling 7
1.6 Multiprotein complexes and pathways 8
1.7 Sequence, structure and function 9
2 Nucleic Acid and Protein Sequence Databases 11
G. Williams
2.1 Introduction 11
2.2 The main sequence databases 11
2.3 Rate of database growth 34
2.4 Problems with the data 35
2.5 Accessing the databases 37
References 37
3 Phenotype, Mutation and Genetic Linkage Databases and
Their Links to Sequence Databases 39
R. Cotton
3.1 Introduction 39
3.2 Levels of variation 40
3.3 Definitions 40
3.4 Types of databases 41
3.5 Using mutation databases 49
3.6 Exercises 50
3.7 The HUGO mutation database initiative 51
3.8 Conclusion 51
References 52
vi Contents 4 DNA Composition, Codon Usage and Exon Prediction 53
R. Guigo
4.1 Introduction 53
4.2 Measures dependent on a model of coding DNA 55
4.3 Measures independent of a model of coding DNA 69
4.4 Coding statistics in gene identification programs 76
References 79
5 The Properties of Amino Acids in Sequences 81
W.R. Taylor
5.1 Introduction 81
5.2 Properties of amino acids 82
5.3 Empirically derived amino acid relationships 87
5.4 Relationship to the genetic code 92
5.5 Multiple sequence alignments 95
References 102
6 Sequence Comparison 105
M. Gribskov
6.1 Introduction 105
6.2 Dotplots 107
6.3 Alignments 111
6.4 Motif based approaches 115
6.5 Conclusion 118
References 119
7 Simple Repetitive Sequences in DNA Databanks 121
/. Epplen E.J.M. Santos
7.1 Introduction 121
7.2 Microsatellites in databases for population genetic analyses 122
7.3 Genetic distances 127
7.4 Population sizes and gene flow 129
7.5 Tandem repeat block expansion diseases a continuum from
trinucleotides to minisatellites? Implications for database usage
in population genetics 131
Contents vii
7.6 Summary 132
References 132
8 Gene Feature Identification 135
P. Bucher
8.1 Introduction 135
8.2 Biologically interesting sequences features 136
8.3 Sequence analysis methods 144
8.4 Computer programs, databases and WWW servers 152
8.5 An example 158
References 162
9 Multiple Sequence Alignment 165
D. Higgins
9.1 Introduction 165
9.2 Selecting the sequences to align 167
9.3 Automatic sequence alignment 169
9.4 Using Clustal W and Clustal X 172
9.5 Editing and viewing multiple alignments 181
References 182
10 On line Resources for RNA Science 185
K. Triman
10.1 Introduction 185
10.2 Specialized RNA related databases 185
10.3 Tools for analysis: RNA structure and prediction 191
10.4 Future directions 192
References 194
11 Predicting the Evolution, Structure and Function of
Proteins from Sequence Information 199
C.P. Porting D.J. Blake
11.1 Introduction 199
11.2 Protein evolution and function 199
viii Contents 11.3 Protein structure and function 202
11.4 Functions of enzymatic and regulatory domains 203
11.5 Classical genetics and protein functions 204
11.6 Summary 210
References 210
12 Structural Databases 215
D. Jones
12.1 Introduction 215
12.2 The Brookhaven Protein Data Bank 216
12.3 The Cambridge Structural Database 216
12.4 BioMagResBank 217
12.5 The Nucleic Acid Database 217
12.6 A typical PDB entry 217
12.7 Protein structure classification resources 221
12.8 Methods for comparing protein structures 222
12.9 Available classification schemes 222
12.10 Constructing the CATH classification 223
12.11 Making use of structural databases 228
12.12 How does threading work? 233
12.13 Conclusions 237
References 238
13 PKR the Protein Kinase Resource 241
M. Gribskov, P. Bourne CM. Smith
13.1 Introduction 241
13.2 Data definition 242
13.3 PKR functions and data 244
References 246
14 Gene Expression Databases 247
R. Baldock D. Davidson
14.1 Introduction 247
14.2 Gene expression assays 249
14.3 Database scope 250
14.4 Gene expression data 252
14.5 Access and submission 257
Contents ix
14.6 Specific database synopses 259
14.7 Conclusion 267
References 268
15 Using the EcoCyc Database 269
P.D. Karp
15.1 Introduction 269
15.2 Genes 270
15.3 Proteins 273
15.4 Pathways 277
15.5 Summary 279
References 280
Appendix: List of URLs in Text and Tables 281
Index 289
|
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| dewey-ones | 576 - Genetics and evolution |
| dewey-raw | 576.5/0285 |
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| discipline | Biologie |
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| id | DE-604.BV012883286 |
| illustrated | Illustrated |
| indexdate | 2024-07-09T18:35:26Z |
| institution | BVB |
| isbn | 0121016250 |
| language | English |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-008769793 |
| oclc_num | 42411842 |
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| physical | XIV, 295 S. Ill., graph. Darst. |
| publishDate | 1999 |
| publishDateSearch | 1999 |
| publishDateSort | 1999 |
| publisher | Acad. Press |
| record_format | marc |
| series2 | Biological techniques |
| spelling | Genetics databases ed. by Martin J. Bishop San Diego, Calif. [u.a.] Acad. Press 1999 XIV, 295 S. Ill., graph. Darst. txt rdacontent n rdamedia nc rdacarrier Biological techniques ADN inriac Code génétique - Information électronique ram Code génétique ram Código genético larpcal DNA gtt Databanken gtt Eiwitten gtt Expression génique Expressão gênica larpcal Genen gtt Genetic code - Computer network resources Genexpressie gtt Genomas larpcal Genética molecular larpcal Génétique - Bases de données Génétique - Ressources Internet Kristalstructuur gtt Mutação genética larpcal Nucleotídeos larpcal RNA gtt Sequência do dna larpcal Séquence des acides aminés code genetique inriac sequencage inriac Datenverarbeitung Amino acid sequence Databases Computer Communication Networks Databases as Topic Genetic Code Genetics Data processing Nucleotide sequence Databases Genbibliothek (DE-588)4236160-6 gnd rswk-swf Internet (DE-588)4308416-3 gnd rswk-swf Sequenzanalyse Chemie (DE-588)4132277-0 gnd rswk-swf DNS (DE-588)4070512-2 gnd rswk-swf Genbibliothek (DE-588)4236160-6 s Internet (DE-588)4308416-3 s DE-604 DNS (DE-588)4070512-2 s Sequenzanalyse Chemie (DE-588)4132277-0 s Bishop, Martin J. 1944- Sonstige (DE-588)124424902 oth HBZ Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=008769793&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Genetics databases ADN inriac Code génétique - Information électronique ram Code génétique ram Código genético larpcal DNA gtt Databanken gtt Eiwitten gtt Expression génique Expressão gênica larpcal Genen gtt Genetic code - Computer network resources Genexpressie gtt Genomas larpcal Genética molecular larpcal Génétique - Bases de données Génétique - Ressources Internet Kristalstructuur gtt Mutação genética larpcal Nucleotídeos larpcal RNA gtt Sequência do dna larpcal Séquence des acides aminés code genetique inriac sequencage inriac Datenverarbeitung Amino acid sequence Databases Computer Communication Networks Databases as Topic Genetic Code Genetics Data processing Nucleotide sequence Databases Genbibliothek (DE-588)4236160-6 gnd Internet (DE-588)4308416-3 gnd Sequenzanalyse Chemie (DE-588)4132277-0 gnd DNS (DE-588)4070512-2 gnd |
| subject_GND | (DE-588)4236160-6 (DE-588)4308416-3 (DE-588)4132277-0 (DE-588)4070512-2 |
| title | Genetics databases |
| title_auth | Genetics databases |
| title_exact_search | Genetics databases |
| title_full | Genetics databases ed. by Martin J. Bishop |
| title_fullStr | Genetics databases ed. by Martin J. Bishop |
| title_full_unstemmed | Genetics databases ed. by Martin J. Bishop |
| title_short | Genetics databases |
| title_sort | genetics databases |
| topic | ADN inriac Code génétique - Information électronique ram Code génétique ram Código genético larpcal DNA gtt Databanken gtt Eiwitten gtt Expression génique Expressão gênica larpcal Genen gtt Genetic code - Computer network resources Genexpressie gtt Genomas larpcal Genética molecular larpcal Génétique - Bases de données Génétique - Ressources Internet Kristalstructuur gtt Mutação genética larpcal Nucleotídeos larpcal RNA gtt Sequência do dna larpcal Séquence des acides aminés code genetique inriac sequencage inriac Datenverarbeitung Amino acid sequence Databases Computer Communication Networks Databases as Topic Genetic Code Genetics Data processing Nucleotide sequence Databases Genbibliothek (DE-588)4236160-6 gnd Internet (DE-588)4308416-3 gnd Sequenzanalyse Chemie (DE-588)4132277-0 gnd DNS (DE-588)4070512-2 gnd |
| topic_facet | ADN Code génétique - Information électronique Code génétique Código genético DNA Databanken Eiwitten Expression génique Expressão gênica Genen Genetic code - Computer network resources Genexpressie Genomas Genética molecular Génétique - Bases de données Génétique - Ressources Internet Kristalstructuur Mutação genética Nucleotídeos RNA Sequência do dna Séquence des acides aminés code genetique sequencage Datenverarbeitung Amino acid sequence Databases Computer Communication Networks Databases as Topic Genetic Code Genetics Data processing Nucleotide sequence Databases Genbibliothek Internet Sequenzanalyse Chemie DNS |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=008769793&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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