DNA-protein: structural interactions
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Oxford u.a.
IRL Press at Oxford Univ. Press
1995
|
| Schriftenreihe: | Frontiers in molecular biology
7 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | X, 202 S. Ill. |
| ISBN: | 0199634548 019963453X |
Internformat
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| 245 | 1 | 0 | |a DNA-protein |b structural interactions |c ed. by David M. J. Lilley |
| 246 | 1 | 3 | |a DNA protein |
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| 650 | 4 | |a Interactions ADN-protéine | |
| 650 | 4 | |a DNA |x chemistry | |
| 650 | 4 | |a DNA-protein interactions | |
| 650 | 4 | |a Proteins |x chemistry | |
| 650 | 4 | |a Structure-Activity Relationship | |
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Datensatz im Suchindex
| _version_ | 1804124749382549504 |
|---|---|
| adam_text | DNA-PROTEIN : STRUCTURAL INTERACTIONS EDITE D DAVID N~JPRCIUEY LIST OF
CONTRIBUTORS XI 1 DNA-PROTEIN INTERACTION AT HIGH RESOLUTION 1 BEN LUIS
I 1. INTRODUCTION 1 2. CLASSIFICATION OF THE DNA-BINDING PROTEINS 2 2.1
THE HELIX-TURN-HELIX 5 2 .2 ZINC-BEARING DNA-BINDING DOMAINS 8 2 .3
ZIPPER GROUP 1 5 2.4 13-SHEET GROUP 15 2.5 ENZYMES: ASSORTED MOTIFS 16
2.6 13-BARREL DIMERIZATION, HMG-BOX, AND OTHER MOTIFS 20 2.7 SOME
UNIFYING THEMES 2 1 3. STEREOCHEMISTRY OF PROTEIN-DNA INTERACTIONS 2 1
3.1 SIDE- AND MAIN-CHAIN INTERACTIONS WITH BASES AND PHOSPHATES 2 1 3.2
WATER-MEDIATED CONTACTS 23 3.3 BURIED SURFACES 25 3.4 ELECTROSTATICS 26
4. DNA STRUCTURE AND PROTEIN-DNA INTERACTIONS 27 4.1 SOME MECHANICAL
PROPERTIES OF DUPLEX DNA 27 4.2 DNA CONFORMABILITY IN CATALYSIS 28 4.3
DNA CONFORMABILITY IN EQUILIBRIUM COMPLEXES 31 4.4 SPECIFIC AND
NON-SPECIFIC COMPLEXES 34 5. COOPERATIVITY 34 6. SUMMARY AND CONCLUSIONS
37 ACKNOWLEDGEMENTS 3 9 REF ERENCES 3 9 2 DNA BENDING BY SEQUENCE AND
PROTEINS 4 9 ANDREW A . TRAVER S 1. INTRODUCTION 49 2. THE LOCAL
CONFORMATION OF DNA 4 9 3. DNA CURVATURE 5 0 3.1 INTRINSIC CURVATURE OF
DNA 5 0 3.2 THE MOLECULAR BASIS FOR DNA CURVATURE 5 1 4. GLOBAL DNA
BENDING 54 5. PROTEIN-INDUCED DNA DEFORMATION 55 5.1 THE DISTORTION OF
DNA BY PROTEINS 55 5.2 DNA UNTWISTING 5 7 5.3 THE SELECTIVITY OF
PROTEIN-INDUCED DNA DEFORMATION 6 1 6. NUCLEOPROTEIN COMPLEXES 62 6.1
THE ASSEMBLY OF NUCLEOPROTEIN COMPLEXES 62 6.2 THE ARCHITECTURE OF
NUCLEOPROTEIN COMPLEXES 6 6 ACKNOWLEDGEMENTS 6 8 REFERENCES 6 8 3
ENZYMES THAT SUPERCOIL DNA 7 6 JAMES C . WAN G 1. INTRODUCTION 7 6 2 . .
DNA SUPERCOILING BY DNA GYRASE 7 6 3. DNA SUPERCOILING BY TRANSCRIPTION
AND OTHER PROCESSES INVOLVIN G THE TRANSLOCATION OF A MACROMOLECULAR
ASSEMBLY ALONG A DNA 8 1 3.1 TRANSCRIPTIONAL SUPERCOILING 8 1 3.2
SUPERCOILING BY DNA HELICASES 8 4 4. DNA SUPERCOILING BY OTHER
MECHANISMS 8 6 5. CONCLUDING REMARKS 8 6 REFERENCES 8 7 4 RECOGNITION OF
DNA DAMAGE AND REPAIR 9 0 AZIZ SANCAR 1. INTRODUCTION 90 2. DIRECT
RECOGNITION AND REPAIR 90 2.1 DNA PHOTOLYASE 91 2.2 0 6 MEG-DNA
METHYLTRANSFERASE (MTASE) 94 2.3 DNA N-GLYCOSYLASES 97 3. RECOGNITION
AND REPAIR MEDIATED BY MOLECULAR MATCHMAKERS 98 3 .1 EXCISION NUCLEASE
(EXCINUCLEASE) 98 3 .2 STRAND-SPECIFIC MISMATCH REPAIR 102 4.
RECOGNITION OF DAMAGE BY PROXY 104 4.1 STIMULATION OF EXCINUCLEASE BY
PHOTOLYASE 104 4.2 TRANSCRIPTION-REPAIR COUPLING 105 5. CONCLUSIONS 106
REFERENCES 106 5 STRUCTURE-RECOGNITION BY DNA JUNCTION RESOLVIN G
ENZYMES 114 DAVID M . J . LILLE Y 1. STRUCTURE-RECOGNITION BY DNA
JUNCTION RESOLVING ENZYMES 114 2. GENETIC RECOMBINATION 114 3. DNA
JUNCTION RESOLVING ENZYMES 116 4. BRANCHED DNA STRUCTURES 118 4.1 THE
FOUR-WAY DNA JUNCTION 118 4.2 THE THREE-WAY DNA JUNCTION 122 4.3 DNA
BASE BULGES 122 5. INTERACTIONS BETWEEN RESOLVING ENZYMES AND DNA 124
5.1 LOCATION OF CLEAVAGE SITES 124 5.2 STRUCTURE-RECOGNITION BY
RESOLVING ENZYMES 126 5.3 STRUCTURE-RECOGNITION IN A WIDER CONTEXT 129
6. GENERAL IMPORTANCE OF STRUCTURE-RECOGNITION IN RECOMBINATION 130
ACKNOWLEDGEMENTS 133 REFERENCES 133 6 SITE-SPECIFIC RECOMBINASES AND
THEIR INTERACTIONS WITH DNA 14 1 REID C . JOHNSON 1. INTRODUCTION 14 1
2. THE DNA INVERTASE-RESOLVASE FAMILY 14 2 2 .1 GENERAL DESCRIPTION OF
REACTIONS 14 2 2 .2 MODULAR STRUCTURE OF THE DNA INVERTASE-RESOLVASE
PROTEINS 143 2.3 THE RECOMBINATION SITE FOR DNA INVERSION 145 2.4 THE
RESOLVASE RECOMBINATION SITE 14 6 2.5 SPECIFIC BINDING OF THE C-TERMINAL
DOMAIN TO DNA 148 2.6 CRYSTAL STRUCTURE OF THE N-TERMINUS OF RESOLVASE
155 2 .7 MODEL OF AN INTACT RECOMBINASE BOUND TO A RECOMBINATION SITE
157 3. THE INTEGRASE FAMILY 160 3 .1 GENERAL DESCRIPTION OF REACTIONS
160 3 .2 THE FLP AND CRE SITE-SPECIFIC RECOMBINATION SYSTEMS 160 3 .3
THE X SITE-SPECIFIC RECOMBINATION SYSTEM 165 4. SUMMARY 169
ACKNOWLEDGEMENTS 170 REFERENCES 170 7 THE HMG-BOX DOMAIN 177 MARCO E .
BIANCH I 1. INTRODUCTION 177 2. THE HMG-BOX MOTIF 177 3. THE HMG-BOX
PROTEINS: AN OVERVIEW 178 3.1 HMG1 AND HMG1-LIKE PROTEINS 178 3.2
NUCLEOLAR AND MITOCHONDRIAL TRANSCRIPTION FACTORS 18 1 3.3
SEQUENCE-SPECIFIC TRANSCRIPTION FACTORS CONTAINING HMG-BOXES 18 2 3.4
HMG-BOX PROTEINS THAT RECOGNISE DNA-CISPLATIN ADDUCTS 18 3 4. THE
DNA-BINDING PROPERTIES OF HMG-BOX PROTEINS AND ISOLATE D HMG-BOXES 18 3
5. STRUCTURAL INFORMATION ON HMG-BOXES 18 8 5.1 SOLUTION STRUCTURE OF
HMG-BOX DOMAIN B OF MAMMALIAN HMG1 18 8 5.2 MUTANT HMG-BOXES WITH
REDUCED STABILITY OR DNA AFFINITY 18 8 6. PROKARYOTIC ANALOGUES OF
HMG-BOX PROTEINS 19 1 7. BIOLOGICAL SIGNIFICANCE OF HMG-BOX-INDUCED DNA
BENDING 19 1 8. CONCLUSION AND PERSPECTIVES 19 3 REFERENCES 19 4 INDEX
201
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| isbn | 0199634548 019963453X |
| language | English |
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| publisher | IRL Press at Oxford Univ. Press |
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| series | Frontiers in molecular biology |
| series2 | Frontiers in molecular biology |
| spelling | DNA-protein structural interactions ed. by David M. J. Lilley DNA protein Oxford u.a. IRL Press at Oxford Univ. Press 1995 X, 202 S. Ill. txt rdacontent n rdamedia nc rdacarrier Frontiers in molecular biology 7 DNA gtt Eiwitten gtt Interactie gtt Interactions ADN-protéine DNA chemistry DNA-protein interactions Proteins chemistry Structure-Activity Relationship DNS (DE-588)4070512-2 gnd rswk-swf Wechselwirkung (DE-588)4064937-4 gnd rswk-swf Proteine (DE-588)4076388-2 gnd rswk-swf Proteine (DE-588)4076388-2 s DNS (DE-588)4070512-2 s Wechselwirkung (DE-588)4064937-4 s DE-604 Lilley, David M. J. Sonstige oth Frontiers in molecular biology 7 (DE-604)BV010329078 7 GBV Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=006874087&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | DNA-protein structural interactions Frontiers in molecular biology DNA gtt Eiwitten gtt Interactie gtt Interactions ADN-protéine DNA chemistry DNA-protein interactions Proteins chemistry Structure-Activity Relationship DNS (DE-588)4070512-2 gnd Wechselwirkung (DE-588)4064937-4 gnd Proteine (DE-588)4076388-2 gnd |
| subject_GND | (DE-588)4070512-2 (DE-588)4064937-4 (DE-588)4076388-2 |
| title | DNA-protein structural interactions |
| title_alt | DNA protein |
| title_auth | DNA-protein structural interactions |
| title_exact_search | DNA-protein structural interactions |
| title_full | DNA-protein structural interactions ed. by David M. J. Lilley |
| title_fullStr | DNA-protein structural interactions ed. by David M. J. Lilley |
| title_full_unstemmed | DNA-protein structural interactions ed. by David M. J. Lilley |
| title_short | DNA-protein |
| title_sort | dna protein structural interactions |
| title_sub | structural interactions |
| topic | DNA gtt Eiwitten gtt Interactie gtt Interactions ADN-protéine DNA chemistry DNA-protein interactions Proteins chemistry Structure-Activity Relationship DNS (DE-588)4070512-2 gnd Wechselwirkung (DE-588)4064937-4 gnd Proteine (DE-588)4076388-2 gnd |
| topic_facet | DNA Eiwitten Interactie Interactions ADN-protéine DNA chemistry DNA-protein interactions Proteins chemistry Structure-Activity Relationship DNS Wechselwirkung Proteine |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=006874087&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
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