Structural analysis of DNA sequences:
Saved in:
| Main Author: | |
|---|---|
| Format: | Book |
| Language: | German |
| Published: |
Berlin
Köster
1995
|
| Edition: | 1. Aufl. |
| Series: | Wissenschaftliche Schriftenreihe Bioinformatik
1 |
| Subjects: | |
| Online Access: | Inhaltsverzeichnis |
| Item Description: | Zugl.: Berlin, Humboldt-Univ., Diss., 1994 |
| Physical Description: | 131 S. graph. Darst. |
| ISBN: | 3895740411 |
Staff View
MARC
| LEADER | 00000nam a2200000 cb4500 | ||
|---|---|---|---|
| 001 | BV010029055 | ||
| 003 | DE-604 | ||
| 005 | 19960221 | ||
| 007 | t | ||
| 008 | 950130s1995 gw d||| m||| 00||| ger d | ||
| 016 | 7 | |a 943359872 |2 DE-101 | |
| 020 | |a 3895740411 |c kart. : DM 46.00 |9 3-89574-041-1 | ||
| 035 | |a (OCoLC)844995038 | ||
| 035 | |a (DE-599)BVBBV010029055 | ||
| 040 | |a DE-604 |b ger |e rakddb | ||
| 041 | 0 | |a ger | |
| 044 | |a gw |c DE | ||
| 049 | |a DE-703 | ||
| 050 | 0 | |a QP624 | |
| 084 | |a WD 5360 |0 (DE-625)148202: |2 rvk | ||
| 100 | 1 | |a Schmitt, Armin |e Verfasser |4 aut | |
| 245 | 1 | 0 | |a Structural analysis of DNA sequences |c Armin Schmitt |
| 250 | |a 1. Aufl. | ||
| 264 | 1 | |a Berlin |b Köster |c 1995 | |
| 300 | |a 131 S. |b graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 490 | 1 | |a Wissenschaftliche Schriftenreihe Bioinformatik |v 1 | |
| 500 | |a Zugl.: Berlin, Humboldt-Univ., Diss., 1994 | ||
| 650 | 4 | |a DNA |x Structure | |
| 650 | 4 | |a Entropy (Information theory) | |
| 650 | 4 | |a Nucleotide sequence | |
| 650 | 0 | 7 | |a DNS-Sequenz |0 (DE-588)4150352-1 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Strukturaufklärung |0 (DE-588)4183788-5 |2 gnd |9 rswk-swf |
| 655 | 7 | |0 (DE-588)4113937-9 |a Hochschulschrift |2 gnd-content | |
| 689 | 0 | 0 | |a DNS-Sequenz |0 (DE-588)4150352-1 |D s |
| 689 | 0 | 1 | |a Strukturaufklärung |0 (DE-588)4183788-5 |D s |
| 689 | 0 | |5 DE-604 | |
| 830 | 0 | |a Wissenschaftliche Schriftenreihe Bioinformatik |v 1 |w (DE-604)BV010125411 |9 1 | |
| 856 | 4 | 2 | |m DNB Datenaustausch |q application/pdf |u http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=006650602&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |3 Inhaltsverzeichnis |
Record in the Search Index
| _version_ | 1805067193733349376 |
|---|---|
| adam_text |
CONTENTS
SUMMARY
4
1
INTRODUCTION
-
STATISTICAL
MECHANICS
IN
BIOLOGY
6
2
SOME
COMMUNICATION
THEORY
7
3
ENTROPIES
MEASURE
THE
ORDER
STATE
9
3.1
WHAT
DO
ENTROPIES
TEIL
US
ABOUT
SEQUENCES?
.
11
3.1.1
SCALING
LAWS
FOR
BLOCK
ENTROPIES
.
12
3.1.2
THE
EFFECTIVE
NUMBER
OF
WORDS
.
13
3.2
MEANINGFUL
SEQUENCES
ARE
STRUCTURED
BY
RULES
.
15
4
DETERMINING
ENTROPIES
17
4.1
THE
FINITE
SAMPLE
EFFECT
.
17
4.2
THE
EXPECTED
ENTROPY
.
18
4.2.1
THE
EXPECTED
ENTROPY
AS
A
LOWER
BOUND
.
21
4.2.2
THE
VARIANCE
OF
OBSERVED
ENTROPIES
.
22
4.3
THE
QUALITY
OF
ENTROPY
ESTIMATES
WITHOUT
CORRECTION
.
24
4.3.1
TWO
NON-EQUIDISTRIBUTED
PROCESSES
.
25
4.3.2
TWO
PROCESSES
WITH
LONG
MEMORIES
.
27
4.4
A
CORRECTION
METHOD
FOR
HIGHER
ORDER
ENTROPIES
.
29
4.4.1
APPLICATION
OF BLOCK
ENTROPIES
TO
SERIES
OF
INTERSPIKE
INTERVALS
31
4.5
CORRECTIVITY
AND
REDUNDANCY
.
35
4.6
A
CORRECTION
METHOD
BASED
UPON
THE
MAXIMUM
ENTROPY
PRINCIPLE
38
4.6.1
SKETCH
OF
THE
ALGORITHM
USING
THE
MEP
AND
ITS
TEST
.
41
4.7
APPLICATIONS
.
43
4.7.1
BLOCK
ENTROPIES
OF
LITERARY
TEXTS
.
43
4.7.2
BLOCK
ENTROPIES
OF
DNA
SEQUENCES
.
44
5
FUERTHER
METHODS
OF
ANALYSIS
49
5.1
THE
MUTUAL
INFORMATION
FUNCTION
.
49
5.2
SLIDING
ENTROPY
ANALYSIS
.
54
5.3
RANK
CORRELATION
TESTS
.
56
5.3.1
COMPARISON
OF
DIFFERENT
TYPES
OF
SAMPLES
.
59
5.4
SOME
COMPLEXITY
MEASURES
.
61
5.4.1
THE
ALGORITHMIC
COMPLEXITY
.
61
5.4.2
THE
GRAMMAR
COMPLEXITY
.
62
5.4.3
THE
LEMPEL-ZIV
COMPLEXITY
.
65
6
THE
MODULAR
STRUCTURE
OF
INFORMATIONAL
SEQUENCES
67
6.1
FINDING
MODULES
.
68
6.2
DESCRIPTION
OF
AN
ALGORITHM
SEARCHING
FOR
MODULES
.
71
6.3
THE
EXPERIMENTUM
CRUCIS
.
71
6.4
LENGTH-DISTRIBUTION
OF
DNA-MODULES
.
74
6.5
COMPARISON
WITH
TEXTS
OF
HUMAN
ORIGIN
.
79
6.6
APPLICATION
I:
THE
MODULARITY
OF
INTRONS
.
80
6.7
APPLICATION
II:
THE
MODULARITY
OF
THE
A-VIRUS
GENOME
.
83
7
THE
ORGANIZATION
OF
REPETITIVE
MODULES
85
7.1
THE
ORGANIZATION
OF
MODULES
IN
NOVELS
.
87
7.2
THE
ORGANIZATION
OF
MODULES
IN
DNA
.
89
7.3
OCCURRENCE
OF
MODULES
AS
GLOBAL
AND
LOCAL
VARIABLES
.
90
8
DETECTION
OF
IMPERFECT
REPEATS
94
8.1
SKETCH
OF
THE
ALGORITHM
.
94
8.2
APPLICATIONS
.
96
8.2.1
A
LONG
IMPERFECT
REPEAT
IN
A
HIV
GENOME
.
96
8.2.2
SIMULTANEOUS
ANALYSIS
OF
SEVERAL
SEQUENCES
.
97
9
DISCUSSION
100
BIBLIOGRAPHY
103
A
TRANSFORMATION
OF
THE
TERM
FOR
THE
EXPECTED
ENTROPY
113
B
THE
MEAN
DISTANCE
BETWEEN
RANDOMLY
INTERSPERSED
REPEATS
115
C
REMARKS
ABOUT
THE
PROGRAMMING
TECHNIQUES
117
2
C.L
BINARY
TREES
.
117
C.2
HASH-TABLES
.
118
D
A
NEW
METHOD
TO
CALCULATE
HIGHER-ORDER
ENTROPIES
FROM
FINITE
SAMPLES
120
D.L
THE
FINITE
SIZE
EFFECT
.
121
D.2
FINITE
SAMPLE
CORRECTIONS
.
122
D.3
NUMERICAL
TESTS
.
125
D.4
DISCUSSION
.
126
CURRICULUM
VITAE
130
ACKNOWLEDGEMENTS
131
3 |
| any_adam_object | 1 |
| author | Schmitt, Armin |
| author_facet | Schmitt, Armin |
| author_role | aut |
| author_sort | Schmitt, Armin |
| author_variant | a s as |
| building | Verbundindex |
| bvnumber | BV010029055 |
| callnumber-first | Q - Science |
| callnumber-label | QP624 |
| callnumber-raw | QP624 |
| callnumber-search | QP624 |
| callnumber-sort | QP 3624 |
| callnumber-subject | QP - Physiology |
| classification_rvk | WD 5360 |
| ctrlnum | (OCoLC)844995038 (DE-599)BVBBV010029055 |
| discipline | Biologie |
| edition | 1. Aufl. |
| format | Book |
| fullrecord | <?xml version="1.0" encoding="UTF-8"?><collection xmlns="http://www.loc.gov/MARC21/slim"><record><leader>00000nam a2200000 cb4500</leader><controlfield tag="001">BV010029055</controlfield><controlfield tag="003">DE-604</controlfield><controlfield tag="005">19960221</controlfield><controlfield tag="007">t</controlfield><controlfield tag="008">950130s1995 gw d||| m||| 00||| ger d</controlfield><datafield tag="016" ind1="7" ind2=" "><subfield code="a">943359872</subfield><subfield code="2">DE-101</subfield></datafield><datafield tag="020" ind1=" " ind2=" "><subfield code="a">3895740411</subfield><subfield code="c">kart. : DM 46.00</subfield><subfield code="9">3-89574-041-1</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(OCoLC)844995038</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-599)BVBBV010029055</subfield></datafield><datafield tag="040" ind1=" " ind2=" "><subfield code="a">DE-604</subfield><subfield code="b">ger</subfield><subfield code="e">rakddb</subfield></datafield><datafield tag="041" ind1="0" ind2=" "><subfield code="a">ger</subfield></datafield><datafield tag="044" ind1=" " ind2=" "><subfield code="a">gw</subfield><subfield code="c">DE</subfield></datafield><datafield tag="049" ind1=" " ind2=" "><subfield code="a">DE-703</subfield></datafield><datafield tag="050" ind1=" " ind2="0"><subfield code="a">QP624</subfield></datafield><datafield tag="084" ind1=" " ind2=" "><subfield code="a">WD 5360</subfield><subfield code="0">(DE-625)148202:</subfield><subfield code="2">rvk</subfield></datafield><datafield tag="100" ind1="1" ind2=" "><subfield code="a">Schmitt, Armin</subfield><subfield code="e">Verfasser</subfield><subfield code="4">aut</subfield></datafield><datafield tag="245" ind1="1" ind2="0"><subfield code="a">Structural analysis of DNA sequences</subfield><subfield code="c">Armin Schmitt</subfield></datafield><datafield tag="250" ind1=" " ind2=" "><subfield code="a">1. Aufl.</subfield></datafield><datafield tag="264" ind1=" " ind2="1"><subfield code="a">Berlin</subfield><subfield code="b">Köster</subfield><subfield code="c">1995</subfield></datafield><datafield tag="300" ind1=" " ind2=" "><subfield code="a">131 S.</subfield><subfield code="b">graph. Darst.</subfield></datafield><datafield tag="336" ind1=" " ind2=" "><subfield code="b">txt</subfield><subfield code="2">rdacontent</subfield></datafield><datafield tag="337" ind1=" " ind2=" "><subfield code="b">n</subfield><subfield code="2">rdamedia</subfield></datafield><datafield tag="338" ind1=" " ind2=" "><subfield code="b">nc</subfield><subfield code="2">rdacarrier</subfield></datafield><datafield tag="490" ind1="1" ind2=" "><subfield code="a">Wissenschaftliche Schriftenreihe Bioinformatik</subfield><subfield code="v">1</subfield></datafield><datafield tag="500" ind1=" " ind2=" "><subfield code="a">Zugl.: Berlin, Humboldt-Univ., Diss., 1994</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">DNA</subfield><subfield code="x">Structure</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Entropy (Information theory)</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Nucleotide sequence</subfield></datafield><datafield tag="650" ind1="0" ind2="7"><subfield code="a">DNS-Sequenz</subfield><subfield code="0">(DE-588)4150352-1</subfield><subfield code="2">gnd</subfield><subfield code="9">rswk-swf</subfield></datafield><datafield tag="650" ind1="0" ind2="7"><subfield code="a">Strukturaufklärung</subfield><subfield code="0">(DE-588)4183788-5</subfield><subfield code="2">gnd</subfield><subfield code="9">rswk-swf</subfield></datafield><datafield tag="655" ind1=" " ind2="7"><subfield code="0">(DE-588)4113937-9</subfield><subfield code="a">Hochschulschrift</subfield><subfield code="2">gnd-content</subfield></datafield><datafield tag="689" ind1="0" ind2="0"><subfield code="a">DNS-Sequenz</subfield><subfield code="0">(DE-588)4150352-1</subfield><subfield code="D">s</subfield></datafield><datafield tag="689" ind1="0" ind2="1"><subfield code="a">Strukturaufklärung</subfield><subfield code="0">(DE-588)4183788-5</subfield><subfield code="D">s</subfield></datafield><datafield tag="689" ind1="0" ind2=" "><subfield code="5">DE-604</subfield></datafield><datafield tag="830" ind1=" " ind2="0"><subfield code="a">Wissenschaftliche Schriftenreihe Bioinformatik</subfield><subfield code="v">1</subfield><subfield code="w">(DE-604)BV010125411</subfield><subfield code="9">1</subfield></datafield><datafield tag="856" ind1="4" ind2="2"><subfield code="m">DNB Datenaustausch</subfield><subfield code="q">application/pdf</subfield><subfield code="u">http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=006650602&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA</subfield><subfield code="3">Inhaltsverzeichnis</subfield></datafield></record></collection> |
| genre | (DE-588)4113937-9 Hochschulschrift gnd-content |
| genre_facet | Hochschulschrift |
| id | DE-604.BV010029055 |
| illustrated | Illustrated |
| indexdate | 2024-07-20T03:30:20Z |
| institution | BVB |
| isbn | 3895740411 |
| language | German |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-006650602 |
| oclc_num | 844995038 |
| open_access_boolean | |
| owner | DE-703 |
| owner_facet | DE-703 |
| physical | 131 S. graph. Darst. |
| publishDate | 1995 |
| publishDateSearch | 1995 |
| publishDateSort | 1995 |
| publisher | Köster |
| record_format | marc |
| series | Wissenschaftliche Schriftenreihe Bioinformatik |
| series2 | Wissenschaftliche Schriftenreihe Bioinformatik |
| spelling | Schmitt, Armin Verfasser aut Structural analysis of DNA sequences Armin Schmitt 1. Aufl. Berlin Köster 1995 131 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Wissenschaftliche Schriftenreihe Bioinformatik 1 Zugl.: Berlin, Humboldt-Univ., Diss., 1994 DNA Structure Entropy (Information theory) Nucleotide sequence DNS-Sequenz (DE-588)4150352-1 gnd rswk-swf Strukturaufklärung (DE-588)4183788-5 gnd rswk-swf (DE-588)4113937-9 Hochschulschrift gnd-content DNS-Sequenz (DE-588)4150352-1 s Strukturaufklärung (DE-588)4183788-5 s DE-604 Wissenschaftliche Schriftenreihe Bioinformatik 1 (DE-604)BV010125411 1 DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=006650602&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Schmitt, Armin Structural analysis of DNA sequences Wissenschaftliche Schriftenreihe Bioinformatik DNA Structure Entropy (Information theory) Nucleotide sequence DNS-Sequenz (DE-588)4150352-1 gnd Strukturaufklärung (DE-588)4183788-5 gnd |
| subject_GND | (DE-588)4150352-1 (DE-588)4183788-5 (DE-588)4113937-9 |
| title | Structural analysis of DNA sequences |
| title_auth | Structural analysis of DNA sequences |
| title_exact_search | Structural analysis of DNA sequences |
| title_full | Structural analysis of DNA sequences Armin Schmitt |
| title_fullStr | Structural analysis of DNA sequences Armin Schmitt |
| title_full_unstemmed | Structural analysis of DNA sequences Armin Schmitt |
| title_short | Structural analysis of DNA sequences |
| title_sort | structural analysis of dna sequences |
| topic | DNA Structure Entropy (Information theory) Nucleotide sequence DNS-Sequenz (DE-588)4150352-1 gnd Strukturaufklärung (DE-588)4183788-5 gnd |
| topic_facet | DNA Structure Entropy (Information theory) Nucleotide sequence DNS-Sequenz Strukturaufklärung Hochschulschrift |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=006650602&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV010125411 |
| work_keys_str_mv | AT schmittarmin structuralanalysisofdnasequences |