Structural analysis of DNA sequences:
Gespeichert in:
| 1. Verfasser: | |
|---|---|
| Format: | Buch |
| Sprache: | German |
| Veröffentlicht: |
Berlin
Köster
1995
|
| Ausgabe: | 1. Aufl. |
| Schriftenreihe: | Wissenschaftliche Schriftenreihe Bioinformatik
1 |
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | Zugl.: Berlin, Humboldt-Univ., Diss., 1994 |
| Beschreibung: | 131 S. graph. Darst. |
| ISBN: | 3895740411 |
Internformat
MARC
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| 100 | 1 | |a Schmitt, Armin |e Verfasser |4 aut | |
| 245 | 1 | 0 | |a Structural analysis of DNA sequences |c Armin Schmitt |
| 250 | |a 1. Aufl. | ||
| 264 | 1 | |a Berlin |b Köster |c 1995 | |
| 300 | |a 131 S. |b graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 490 | 1 | |a Wissenschaftliche Schriftenreihe Bioinformatik |v 1 | |
| 500 | |a Zugl.: Berlin, Humboldt-Univ., Diss., 1994 | ||
| 650 | 4 | |a DNA |x Structure | |
| 650 | 4 | |a Entropy (Information theory) | |
| 650 | 4 | |a Nucleotide sequence | |
| 650 | 0 | 7 | |a DNS-Sequenz |0 (DE-588)4150352-1 |2 gnd |9 rswk-swf |
| 650 | 0 | 7 | |a Strukturaufklärung |0 (DE-588)4183788-5 |2 gnd |9 rswk-swf |
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| 830 | 0 | |a Wissenschaftliche Schriftenreihe Bioinformatik |v 1 |w (DE-604)BV010125411 |9 1 | |
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Datensatz im Suchindex
| _version_ | 1805067193733349376 |
|---|---|
| adam_text |
CONTENTS
SUMMARY
4
1
INTRODUCTION
-
STATISTICAL
MECHANICS
IN
BIOLOGY
6
2
SOME
COMMUNICATION
THEORY
7
3
ENTROPIES
MEASURE
THE
ORDER
STATE
9
3.1
WHAT
DO
ENTROPIES
TEIL
US
ABOUT
SEQUENCES?
.
11
3.1.1
SCALING
LAWS
FOR
BLOCK
ENTROPIES
.
12
3.1.2
THE
EFFECTIVE
NUMBER
OF
WORDS
.
13
3.2
MEANINGFUL
SEQUENCES
ARE
STRUCTURED
BY
RULES
.
15
4
DETERMINING
ENTROPIES
17
4.1
THE
FINITE
SAMPLE
EFFECT
.
17
4.2
THE
EXPECTED
ENTROPY
.
18
4.2.1
THE
EXPECTED
ENTROPY
AS
A
LOWER
BOUND
.
21
4.2.2
THE
VARIANCE
OF
OBSERVED
ENTROPIES
.
22
4.3
THE
QUALITY
OF
ENTROPY
ESTIMATES
WITHOUT
CORRECTION
.
24
4.3.1
TWO
NON-EQUIDISTRIBUTED
PROCESSES
.
25
4.3.2
TWO
PROCESSES
WITH
LONG
MEMORIES
.
27
4.4
A
CORRECTION
METHOD
FOR
HIGHER
ORDER
ENTROPIES
.
29
4.4.1
APPLICATION
OF BLOCK
ENTROPIES
TO
SERIES
OF
INTERSPIKE
INTERVALS
31
4.5
CORRECTIVITY
AND
REDUNDANCY
.
35
4.6
A
CORRECTION
METHOD
BASED
UPON
THE
MAXIMUM
ENTROPY
PRINCIPLE
38
4.6.1
SKETCH
OF
THE
ALGORITHM
USING
THE
MEP
AND
ITS
TEST
.
41
4.7
APPLICATIONS
.
43
4.7.1
BLOCK
ENTROPIES
OF
LITERARY
TEXTS
.
43
4.7.2
BLOCK
ENTROPIES
OF
DNA
SEQUENCES
.
44
5
FUERTHER
METHODS
OF
ANALYSIS
49
5.1
THE
MUTUAL
INFORMATION
FUNCTION
.
49
5.2
SLIDING
ENTROPY
ANALYSIS
.
54
5.3
RANK
CORRELATION
TESTS
.
56
5.3.1
COMPARISON
OF
DIFFERENT
TYPES
OF
SAMPLES
.
59
5.4
SOME
COMPLEXITY
MEASURES
.
61
5.4.1
THE
ALGORITHMIC
COMPLEXITY
.
61
5.4.2
THE
GRAMMAR
COMPLEXITY
.
62
5.4.3
THE
LEMPEL-ZIV
COMPLEXITY
.
65
6
THE
MODULAR
STRUCTURE
OF
INFORMATIONAL
SEQUENCES
67
6.1
FINDING
MODULES
.
68
6.2
DESCRIPTION
OF
AN
ALGORITHM
SEARCHING
FOR
MODULES
.
71
6.3
THE
EXPERIMENTUM
CRUCIS
.
71
6.4
LENGTH-DISTRIBUTION
OF
DNA-MODULES
.
74
6.5
COMPARISON
WITH
TEXTS
OF
HUMAN
ORIGIN
.
79
6.6
APPLICATION
I:
THE
MODULARITY
OF
INTRONS
.
80
6.7
APPLICATION
II:
THE
MODULARITY
OF
THE
A-VIRUS
GENOME
.
83
7
THE
ORGANIZATION
OF
REPETITIVE
MODULES
85
7.1
THE
ORGANIZATION
OF
MODULES
IN
NOVELS
.
87
7.2
THE
ORGANIZATION
OF
MODULES
IN
DNA
.
89
7.3
OCCURRENCE
OF
MODULES
AS
GLOBAL
AND
LOCAL
VARIABLES
.
90
8
DETECTION
OF
IMPERFECT
REPEATS
94
8.1
SKETCH
OF
THE
ALGORITHM
.
94
8.2
APPLICATIONS
.
96
8.2.1
A
LONG
IMPERFECT
REPEAT
IN
A
HIV
GENOME
.
96
8.2.2
SIMULTANEOUS
ANALYSIS
OF
SEVERAL
SEQUENCES
.
97
9
DISCUSSION
100
BIBLIOGRAPHY
103
A
TRANSFORMATION
OF
THE
TERM
FOR
THE
EXPECTED
ENTROPY
113
B
THE
MEAN
DISTANCE
BETWEEN
RANDOMLY
INTERSPERSED
REPEATS
115
C
REMARKS
ABOUT
THE
PROGRAMMING
TECHNIQUES
117
2
C.L
BINARY
TREES
.
117
C.2
HASH-TABLES
.
118
D
A
NEW
METHOD
TO
CALCULATE
HIGHER-ORDER
ENTROPIES
FROM
FINITE
SAMPLES
120
D.L
THE
FINITE
SIZE
EFFECT
.
121
D.2
FINITE
SAMPLE
CORRECTIONS
.
122
D.3
NUMERICAL
TESTS
.
125
D.4
DISCUSSION
.
126
CURRICULUM
VITAE
130
ACKNOWLEDGEMENTS
131
3 |
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| author_facet | Schmitt, Armin |
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| discipline | Biologie |
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| id | DE-604.BV010029055 |
| illustrated | Illustrated |
| indexdate | 2024-07-20T03:30:20Z |
| institution | BVB |
| isbn | 3895740411 |
| language | German |
| oai_aleph_id | oai:aleph.bib-bvb.de:BVB01-006650602 |
| oclc_num | 844995038 |
| open_access_boolean | |
| owner | DE-703 |
| owner_facet | DE-703 |
| physical | 131 S. graph. Darst. |
| publishDate | 1995 |
| publishDateSearch | 1995 |
| publishDateSort | 1995 |
| publisher | Köster |
| record_format | marc |
| series | Wissenschaftliche Schriftenreihe Bioinformatik |
| series2 | Wissenschaftliche Schriftenreihe Bioinformatik |
| spelling | Schmitt, Armin Verfasser aut Structural analysis of DNA sequences Armin Schmitt 1. Aufl. Berlin Köster 1995 131 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Wissenschaftliche Schriftenreihe Bioinformatik 1 Zugl.: Berlin, Humboldt-Univ., Diss., 1994 DNA Structure Entropy (Information theory) Nucleotide sequence DNS-Sequenz (DE-588)4150352-1 gnd rswk-swf Strukturaufklärung (DE-588)4183788-5 gnd rswk-swf (DE-588)4113937-9 Hochschulschrift gnd-content DNS-Sequenz (DE-588)4150352-1 s Strukturaufklärung (DE-588)4183788-5 s DE-604 Wissenschaftliche Schriftenreihe Bioinformatik 1 (DE-604)BV010125411 1 DNB Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=006650602&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Schmitt, Armin Structural analysis of DNA sequences Wissenschaftliche Schriftenreihe Bioinformatik DNA Structure Entropy (Information theory) Nucleotide sequence DNS-Sequenz (DE-588)4150352-1 gnd Strukturaufklärung (DE-588)4183788-5 gnd |
| subject_GND | (DE-588)4150352-1 (DE-588)4183788-5 (DE-588)4113937-9 |
| title | Structural analysis of DNA sequences |
| title_auth | Structural analysis of DNA sequences |
| title_exact_search | Structural analysis of DNA sequences |
| title_full | Structural analysis of DNA sequences Armin Schmitt |
| title_fullStr | Structural analysis of DNA sequences Armin Schmitt |
| title_full_unstemmed | Structural analysis of DNA sequences Armin Schmitt |
| title_short | Structural analysis of DNA sequences |
| title_sort | structural analysis of dna sequences |
| topic | DNA Structure Entropy (Information theory) Nucleotide sequence DNS-Sequenz (DE-588)4150352-1 gnd Strukturaufklärung (DE-588)4183788-5 gnd |
| topic_facet | DNA Structure Entropy (Information theory) Nucleotide sequence DNS-Sequenz Strukturaufklärung Hochschulschrift |
| url | http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=006650602&sequence=000001&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA |
| volume_link | (DE-604)BV010125411 |
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