Translation in eukaryotes:
Gespeichert in:
| Format: | Buch |
|---|---|
| Sprache: | English |
| Veröffentlicht: |
Boca Raton u.a.
CRC Press
1991
|
| Schlagworte: | |
| Online-Zugang: | Inhaltsverzeichnis |
| Beschreibung: | XVII, 415 S. graph. Darst. |
| ISBN: | 0849388163 |
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| 245 | 1 | 0 | |a Translation in eukaryotes |c ed. by Hans Trachsel |
| 264 | 1 | |a Boca Raton u.a. |b CRC Press |c 1991 | |
| 300 | |a XVII, 415 S. |b graph. Darst. | ||
| 336 | |b txt |2 rdacontent | ||
| 337 | |b n |2 rdamedia | ||
| 338 | |b nc |2 rdacarrier | ||
| 650 | 4 | |a Cytogenetics | |
| 650 | 4 | |a Eukaryotic Cells | |
| 650 | 4 | |a Eukaryotic cells | |
| 650 | 4 | |a Genetic translation | |
| 650 | 4 | |a Protein Biosynthesis | |
| 650 | 4 | |a Proteins |x Synthesis | |
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Datensatz im Suchindex
| _version_ | 1804122054663864320 |
|---|---|
| adam_text | Translation In Eukaryotes
Edited by
Hans Trachsel
Institute fur Biochemie und Molekularbiologie
Universitdt Berne
Berne, Switzerland
CRC Press
Boca Raton Ann Arbor Boston London
CONTENTS
Preface v
Contributors vii
PART I: MECHANISM OF TRANSLATION
Chapter 1
EUKARYOTIC RIBOSOMES: STRUCTURE, FUNCTION,
BIOGENESIS, AND EVOLUTION 3
Ira G Wool
1 1 Introduction 3
1 2 Structure of Eukaryotic Ribosomes 4
1 3 Evolution of Eukaryotic Ribosomes 11
1 4 The Biogenesis of Ribosomes: The Regulation of the Synthesis
of the Molecular Components and the Assembly of the Particles 15
1 5 RNA-Protein Interaction: An Analysis of the Recognition by
a-Sarcin of a Ribosomal Domain Critical for Function 18
1 6 CODA 26
Acknowledgments 26
References 26
Chapter 2
TRANSFER RNAs AND AMINOACYL-tRNA
SYNTHETASES 35
Jacques Lapointe and Richard Giege
2 1 Transfer Ribonucleic Acids 35
211 The Biological Necessity of tRNA 35
212 Cytoplasmic and Organellar tRNA Structure 36
213 tRNA Genes and Operons 38
214 tRNA Processing 39
215 tRNA Population and Codon Usage 40
2 2 Aminoacyl-tRNA Synthetases 40
221 An Overview 40
222 Structural Diversity of the Aminoacyl-tRNA Synthetases
and Some Unifying Principles 42
223 Search for the Core Aminoacyl-tRNA Synthetases and
Evolutionary Relationships Between Them 45
ix
x Contents
224 Distinctive Features of Eukaryotic Aminoacyl-tRNA
Synthetases 46
225 Other Functions of Aminoacyl-tRNA Synthetases 47
226 Biosynthesis of Aminoacyl-tRNA Synthetases 50
2 3 tRNA Aminoacylation 51
231 Background—specific tRNA Aminoacylation is a Kinetic
Process 51
232 Specific tRNA/aaRS Interactions 52
233 Mechanism of tRNA Charging, Proofreading, and
Editing 58
234 Associations of Aminoacylated tRNAs with Metabolic
Processes 60
References 61
Chapter 3
mRNA AND mRNP 71
J Bag
3 1 Introduction 71
3 2 Translation and Structure of mRNA 71
3 3 Translational Frameshifting 73
3 4 The 3 -Untranslated Region and Translation 73
3 5 Organellar mRNAs 74
3 6 Stability and mRNA Structure 74
3 7 mRNA-Protein Complexes 77
3 8 Protein Composition of Cytoplasmic mRNP Complexes 79
3 9 Sequence Specific Binding of mRNP Proteins 81
3 10 mRNP Complexes of Specific mRNAs 82
3 11 mRNP Complexes and Translation 84
3 12 Cytoskeleton and mRNA Translation 86
3 13 Small Cytoplasmic RNA-Protein Complexes 89
References 90
Chapter 4
INITIATION: MET-tRNA BINDING 97
Harry O Voorma
4 1 Introduction 97
4 2 Fractionated Cell-Free Systems 99
Contents xi
421 Dissociation of 80S Ribosomes 100
422 Eukaryotic Initiation Factor, eIF-2 100
423 Ternary Complex Formation 101
424 Formation of the 43S Preinitiation Complex 101
425 GDP:GTP Exchange Reaction 103
References 106
Chapter 5
INITIATION: mRNA AND 60S SUBUNIT BINDING 109
Robert E Rhoads
5 1 Introduction 109
5 2 Formation of the 48S Initiation Complex 111
521 Structural Features in mRNA Which Affect Formation of
the 48S Initiation Complex 112
522 Proteins Involved in the Formation of the 48S Initiation
Complex 119
523 Models for 48S Initiation Complex Formation 129
5 3 Formation of the 80S Initiation Complex 132
Acknowledgments 135
References 135
Chapter 6
POLYPEPTIDE CHAIN ELONGATION 149
Lawrence I Slobin
6 1 Introduction 149
6 2 Elongation Rate 149
6 3 The Elongation Cycle 151
631 EF- la Cycle 151
632 Binding of Aminoacyl tRNA to Ribosomes 153
633 Peptide Bond Formation 155
634 Translocation 155
6 4 Structure of Elongation Factors and their Genes 157
641 EF-la 158
642 EF-ip-y 160
643 EF-1 160
644 EF-la-Like Polypeptides 161
645 EF-2 162
6 5 Elongation Factor Synthesis 163
xii Contents
6 6 Conclusions 165
Acknowledgments 166
References 166
Chapter 7
PEPTIDE CHAIN TERMINATION 177
Rosaura P C Valle and Anne-Lise Haenni
7 1 Introduction 177
7 2 Reasons to Terminate: The Basic Process 178
7 3 Other Reasons to Terminate 178
7 4 Reasons for Not Stopping 179
741 Recognition of Termination Codons by tRNAs 179
742 Frameshifting 183
7 5 What Next? 185
Acknowledgments v 185
References 185
PART II: REGULATION OF TRANSLATION
Chapter 8
BINDING OF MET-tRNA 193
Richard J Jackson
8 1 Introduction 193
8 2 Effect of eIF-2 Phosphorylation on Protein Synthesis in
Reticulocyte Lysates 194
8 3 Phosphorylation Sites in eIF-2 198
8 4 How Does eIF-2 Phosphorylation Interfere with GEF Activity? 198
8 5 Other Ways of Modulating GEF Activity 201
8 6 Alternative Interpretations 203
8 7 Is Phosphorylation of eIF-2 a Ubiquitous Control Mechanism? 205
8 8 The dsRNA-Activated Protein Kinase 209
8 9 Interferon Treatment Induces (Latent) DAI 211
8 10 DAI and Virus Infection 213
8 11 The Heme-Controlled Kinase, HCR 216
8 12 HCR-like Kinases in Other Cell Types 219
8 13 Dephosphorylation of eIF-2a(P) 221
8 14 Accessibility of elF-2 to Kinases
Acknowledgments
References
Chapter 9
COVALENT MODIFICATION OF
COMPONENTS
Markus Hiimbelin and George Thomas
9 1 Introduction
9 2 Phosphorylation of eIF-4F
9 3 Phosphorylation of eIF-4B
9 4 S6 Phosphorylation
9 5 Aminoacyl-tRNA Synthetases
9 6 Hypusination of eIF-4D
References
Contents
and Phosphatases
TRANSLATIONAL
xiii
Chapter 10
EXAMPLES OF EUKARYOTIC TRANSLATIONAL
CONTROL: GCN4 AND FERRITIN 243
Alan Hinnebusch and Richard D Klausner
10 1 Introduction 243
10 2 Gene-Specific Translational Control in S cerevisiae by
Upstream Open-Reading Frames 244
10 2 1 CPA1 Expression is Regulated by a Single uORF 245
10 2 2 Translational Control of GCN4 Expression by Multiple
uORFs 247
10 2 3 Translation Control with Heterologous uORFs 250
10 2 4 Translational Control by uORFs in Higher Eukaryotes 261
10 3 A cis-trans Model for Translation Control 261
10 3 1 Iron Metabolism in Complex Eukaryotic Cells 261
10 3 2 The Iron Responsive Element: The cis-Acting RNA
Element 262
10 3 3 The IRE Binding Protein: The Trans-Acting Factor 263
10 3 4 Regulating Both Translation and mRNA Stability 264
10 35A Novel Regulatory Mechanism: The Sulfhydryl
Switch 267
10 36A Regulatory Model 268
References 269
xiv Contents
Chapter 11
THE TRANSLATION OF PICORNAVIRUSES 273
Karen Meerovitch, Nahum Sonenberg and Jerry Pelletier
11 1 Introduction 273
11 2 Shut-Off of Host Protein Synthesis after Poliovirus Infection 274
11 2 1 Early Studies 274
11 2 2 CBP Complex Inactivation 275
11 2 3 eIF-2a Phosphorylation 277
11 3 Internatal Initiation of Translation 278
11 3 1 Internal Initiation on Non-Picomavirus mRNAs 282
11 3 2 Molecular Mechanism for Internal Ribosome Binding 283
11 4 Future Prospectives 283
Acknowledgments 285
References 285
Chapter 12
ADJUSTMENT OF TRANSLATION TO SPECIAL
PHYSIOLOGICAL CONDITIONS 293
Virginia M Pain and Mike J Clemens
12 1 Introduction 293
12 2 Regulation of Translation by Cellular Nutrients 294
12 2 1 Amino Acid Starvation 294
12 2 2 Glucose Starvation 296
12 3 Regulation of Translation by Changes in Ionic Environment 297
12 3 1 Effects of Hypertonic Conditions 297
12 3 2 Regulation by Calcium Ions 298
12 3 3 Effects of Heavy Metal Ions 298
12 4 Translation in Relation to Cellular Growth Control 299
12 4 1 Control by Serum 299
12 4 2 The Role of Individual Growth Factors 300
12 4 3 Protein Kinases Involved in Translational Stimulation
by Mitogens 301
12 4 4 The Control of Protein Synthesis by Interferons 302
12 5 Regulation of Translation by Heat Shock 303
12 6 Translational Control During Mitosis 306
12 7 Translational Control During Early Development 306
12 8 Concluding Remarks 311
Contents xv
Acknowledgments 313
Note Added in Proof 313
References 314
Chapter 13
REGULATION OF ELONGATION RATE 325
Alexander S Spirin and Alexey G Ryazanov
13 1 Introduction: Regulation at Elongation Stage is Important in
Eukaryotic Translation 325
13 2 Elongation Rate Changes Can Be Revealed from Transit Time
Determination and Polyribosome Profile Analyses 326
13 2 1 Transit Time 326
13 2 2 Polyribosome Profile 328
13 2 3 Uncertainty Because of Termination Pause 329
13 3 Elongation Stage of Translation is Shown to be Regulated 330
13 3 1 Overall Elongation Rate in the Cell Can Be Stimulated
or Slowed Down 330
13 3 2 Elongation Rates Can Be Differentially Affected on
Different mRNAs 331
13 3 3 Regulatable Pauses Occur During Elongation 331
13 4 Overall Elongation Rate Can Be Modulated Through Changes
in the Activity of the Elongation Factors 332
13 4 1 Do Aminoacyl-tRNA and GTP Concentrations Control
the Elongation Rate? 332
13 4 2 Is the Ribosome a Target for Physiological Regulation
of Elongation? 334
13 4 3 Elongation Factors Activities Can Be Regulated 335
13 5 Specific Elongation Rates on Different mRNAs May Be
Underlain by Intercytoplasmic Compartmentations and
Ribosome Pausing 339
13 6 Mechanisms of Ribosome Pausing and Its Modulation Can Be
Different 340
13 6 1 Ribosomes Can Be Retarded at Modulating Codons 340
13 6 2 Structural Barriers May Exist Along mRNA 340
13 6 3 Structure of Nascent Peptide May Serve as a Signal
for the Elongation Pause 341
13 7 Can the Regulation at the Elongation Stage Result in
Translational Discrimination of Different mRNAs? 341
References 343
xvi Contents
PART III: APPENDIX
Chapter 14
COMPARISON OF PROKARYOTIC AND EUKARYOTIC
TRANSLATION 353
John W B Hershey
14 1 Introduction 353
14 2 Pathway of Protein Synthesis in Bacteria 354
14 2 1 Overview 354
14 2 2 Initiation 354
14 2 3 Elongation 359
14 2 4 Termination 360
14 2 5 Reinitiation 360
14 3 Comparison of the Translational Machinery 361
14 3 1 mRNA 361
14 3 2 tRNAs and Aminoacyl-tRNA Synthetases 362
14 3 3 Ribosomes 364
14 3 4 Initiation Factors 365
14 3 5 Elongation Factors 367
14 3 6 Termination Factors 368
14 4 Translational Controls 368
14 4 1 Initiator Codon and Context 368
14 4 2 mRNA Secondary Structure 369
14 4 3 Tranj-Acting Protein Factors and Antisense RNAs 369
Acknowledgments 370
References 370
Chapter 15
INHIBITORS OF EUKARYOTIC PROTEIN SYNTHESIS 375
Juan P G Ballesta
15 1 Introduction 375
15 2 Mode of Action 376
15 2 1 Inhibitors of Initiation 376
15 2 2 Inhibitors of Elongation 378
15 2 3 Translocation 381
15 2 4 Termination 383
15 2 5 Plant and Microbial Toxins 383
15 3 Resistance to Antibiotics 384
15 4 Inhibitors as Research Tools 385
15 5 Future Developments
15 6 Techniques Used in Present Antibiotic Research
Acknowledgments
References
Contents xvii
Chapter 16
NOMENCLATURE OF INITIATION, ELONGATION AND
TERMINATION FACTORS FOR TRANSLATION IN
EUKARYOTES 393
Brian Safer
16 1 General Principles of Symbolism 394
16 2 Initiation Factors 394
16 2 1 Main Groups of Initiation Factors 394
16 2 2 New Initiation Factors 394
16 2 3 Subunits of Initiation Factors 395
16 3 Elongation Factors 395
16 4 Termination Factor 395
16 5 List of Known Mammalian Factors 395
16 6 Future Revision 395
References 398
Index 401
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| language | English |
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| spelling | Translation in eukaryotes ed. by Hans Trachsel Boca Raton u.a. CRC Press 1991 XVII, 415 S. graph. Darst. txt rdacontent n rdamedia nc rdacarrier Cytogenetics Eukaryotic Cells Eukaryotic cells Genetic translation Protein Biosynthesis Proteins Synthesis Eukaryoten (DE-588)4070991-7 gnd rswk-swf Translation Genetik (DE-588)4185909-1 gnd rswk-swf Eukaryoten (DE-588)4070991-7 s Translation Genetik (DE-588)4185909-1 s DE-604 Trachsel, Hans Sonstige oth HEBIS Datenaustausch application/pdf http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&local_base=BVB01&doc_number=005050518&sequence=000002&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA Inhaltsverzeichnis |
| spellingShingle | Translation in eukaryotes Cytogenetics Eukaryotic Cells Eukaryotic cells Genetic translation Protein Biosynthesis Proteins Synthesis Eukaryoten (DE-588)4070991-7 gnd Translation Genetik (DE-588)4185909-1 gnd |
| subject_GND | (DE-588)4070991-7 (DE-588)4185909-1 |
| title | Translation in eukaryotes |
| title_auth | Translation in eukaryotes |
| title_exact_search | Translation in eukaryotes |
| title_full | Translation in eukaryotes ed. by Hans Trachsel |
| title_fullStr | Translation in eukaryotes ed. by Hans Trachsel |
| title_full_unstemmed | Translation in eukaryotes ed. by Hans Trachsel |
| title_short | Translation in eukaryotes |
| title_sort | translation in eukaryotes |
| topic | Cytogenetics Eukaryotic Cells Eukaryotic cells Genetic translation Protein Biosynthesis Proteins Synthesis Eukaryoten (DE-588)4070991-7 gnd Translation Genetik (DE-588)4185909-1 gnd |
| topic_facet | Cytogenetics Eukaryotic Cells Eukaryotic cells Genetic translation Protein Biosynthesis Proteins Synthesis Eukaryoten Translation Genetik |
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