Computational systems bioinformatics :: CSB 2008 conference proceedings, volume 7 : Stanford University, USA, 26-29 August 2008 /
This proceedings volume contains 29 papers covering many of the latest developments in the fast-growing field of bioinformatics. The contributions span a wide range of topics, including computational genomics and genetics, protein function and computational proteomics, the transcriptome, structural...
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| Other Authors: | , |
| Format: | Electronic eBook |
| Language: | English |
| Published: |
London : Singapore :
Imperial College Press ; Distributed by World Scientific Pub. Co.,
©2008.
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| Subjects: | |
| Online Access: | DE-862 DE-863 |
| Summary: | This proceedings volume contains 29 papers covering many of the latest developments in the fast-growing field of bioinformatics. The contributions span a wide range of topics, including computational genomics and genetics, protein function and computational proteomics, the transcriptome, structural bioinformatics, microarray data analysis, motif identification, biological pathways and systems, and biomedical applications. The papers not only cover theoretical aspects of bioinformatics but also delve into the application of new methods, with input from computation, engineering and biology disciplines. This multidisciplinary approach to bioinformatics gives these proceedings a unique viewpoint of the field. |
| Physical Description: | 1 online resource (xiii, 340 pages) : illustrations (some color) |
| Bibliography: | Includes bibliographical references and author index. |
| ISBN: | 9781848162648 1848162642 1848162634 9781848162631 |
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| 505 | 0 | |a Genomics. An ORFome assembly approach to metagenomics sequences analysis / Yuzhen Ye and Haixu Tang. A probabilistic coding based quantum genetic algorithm for multiple sequence alignment / Hongwei Huo [and others]. Scalable computation of kinship and identity coefficients on large pedigrees / En Cheng, Brendan Elliott, and Z. Meral Ozsoyoglu. Voting algorithms for the motif finding problem / Xiaowen Liu, Bin Ma, and Lusheng Wang -- Proteomics. A max-flow based approach to the identification of protein complexes using protein interaction and microarray data / Jianxing Feng, Rui Jiang, and Tao Jiang. MSDash: mass spectrometry database and search / Zhan Wu, Gilles Lajoie, and Bin Ma. Estimating support for protein-protein interaction data with applications to function prediction / Erliang Zeng [and others]. GaborLocal: peak detection in mass spectrum by gabor filters and Gaussian local maxima / Nha Nguyen [and others] -- Structural bioinformatics. Optimizing Bayes error for protein structure model selection by stability mutagenesis / Xiaoduan Ye, Alan M. Friedman, and Chris Bailey-Kellogg. Feedback algorithm and web-server for protein structure alignment / Zhiyu Zhao [and others]. Predicting flexible length linear B-cell epitopes / Yasser EL-Manzalawy, Drena Dobbs, and Vasant Honavar. Fast and accurate multi-class protein fold recognition with spatial sample kernels / Pavel Kuksa, Pai-Hsi Huang, and Vladimir Pavlovic. Designing secondary structure profiles for fast ncRNA identification / Yanni Sun and Jeremy Buhler. Matching of structural motifs using hashing on residue labels and geometric filtering for protein function prediction / Mark Moll and Lydia E. Kavraki. A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns / Jianyang (Michael) Zeng [and others]. Iterative non-sequential protein structural alignment / Saeed Salem and Mohammed J. Zaki. Combining sequence and structural profiles for protein solvent accessibility prediction / Rajkumar Bondugula and Dong Xu. Extensive exploration of conformational space improves Rosetta results for short protein domains / Yaohang Li [and others]. Improving homology models for protein-ligand binding sites / Chris Kauffman, Huzefa Rangwala, and George Karypis -- Pathways, networks, and biological systems. Using relative importance methods to model high-throughput gene perturbation screens / Ying Jin [and others]. Consistent alignment of metabolic pathways without abstraction / Ferhat Ay, Tamer Kahveci, and Valerie de Crâecy-Lagard. Detecting pathways transcriptionally correlated with clinical parameters / Igor Ulitsky and Ron Shamir -- Computational genomics. The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid / Chunfang Zheng [and others]. Error tolerant sibship reconstruction in wild populations / Saad I. Sheikh [and others]. On the accurate construction of consensus genetic maps / Yonghui Wu, Timothy J. Close, and Stefano Lonardi. Efficient haplotype inference from pedigrees with missing data using linear systems with disjoint-set data structures / Xin Li and Jing Li -- Computational methods. Knowledge representation and data mining for biological imaging / Wamiq M. Ahmed. Fast multisegment Alignments for temporal expression profiles / Adam A. Smith and Mark Craven. Graph wavelet alignment kernels for drug virtual screening / Aaron Smalter, Jun Huan, and Gerald Lushington. | |
| 520 | |a This proceedings volume contains 29 papers covering many of the latest developments in the fast-growing field of bioinformatics. The contributions span a wide range of topics, including computational genomics and genetics, protein function and computational proteomics, the transcriptome, structural bioinformatics, microarray data analysis, motif identification, biological pathways and systems, and biomedical applications. The papers not only cover theoretical aspects of bioinformatics but also delve into the application of new methods, with input from computation, engineering and biology disciplines. This multidisciplinary approach to bioinformatics gives these proceedings a unique viewpoint of the field. | ||
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| contents | Genomics. An ORFome assembly approach to metagenomics sequences analysis / Yuzhen Ye and Haixu Tang. A probabilistic coding based quantum genetic algorithm for multiple sequence alignment / Hongwei Huo [and others]. Scalable computation of kinship and identity coefficients on large pedigrees / En Cheng, Brendan Elliott, and Z. Meral Ozsoyoglu. Voting algorithms for the motif finding problem / Xiaowen Liu, Bin Ma, and Lusheng Wang -- Proteomics. A max-flow based approach to the identification of protein complexes using protein interaction and microarray data / Jianxing Feng, Rui Jiang, and Tao Jiang. MSDash: mass spectrometry database and search / Zhan Wu, Gilles Lajoie, and Bin Ma. Estimating support for protein-protein interaction data with applications to function prediction / Erliang Zeng [and others]. GaborLocal: peak detection in mass spectrum by gabor filters and Gaussian local maxima / Nha Nguyen [and others] -- Structural bioinformatics. Optimizing Bayes error for protein structure model selection by stability mutagenesis / Xiaoduan Ye, Alan M. Friedman, and Chris Bailey-Kellogg. Feedback algorithm and web-server for protein structure alignment / Zhiyu Zhao [and others]. Predicting flexible length linear B-cell epitopes / Yasser EL-Manzalawy, Drena Dobbs, and Vasant Honavar. Fast and accurate multi-class protein fold recognition with spatial sample kernels / Pavel Kuksa, Pai-Hsi Huang, and Vladimir Pavlovic. Designing secondary structure profiles for fast ncRNA identification / Yanni Sun and Jeremy Buhler. Matching of structural motifs using hashing on residue labels and geometric filtering for protein function prediction / Mark Moll and Lydia E. Kavraki. A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns / Jianyang (Michael) Zeng [and others]. Iterative non-sequential protein structural alignment / Saeed Salem and Mohammed J. Zaki. Combining sequence and structural profiles for protein solvent accessibility prediction / Rajkumar Bondugula and Dong Xu. Extensive exploration of conformational space improves Rosetta results for short protein domains / Yaohang Li [and others]. Improving homology models for protein-ligand binding sites / Chris Kauffman, Huzefa Rangwala, and George Karypis -- Pathways, networks, and biological systems. Using relative importance methods to model high-throughput gene perturbation screens / Ying Jin [and others]. Consistent alignment of metabolic pathways without abstraction / Ferhat Ay, Tamer Kahveci, and Valerie de Crâecy-Lagard. Detecting pathways transcriptionally correlated with clinical parameters / Igor Ulitsky and Ron Shamir -- Computational genomics. The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid / Chunfang Zheng [and others]. Error tolerant sibship reconstruction in wild populations / Saad I. Sheikh [and others]. On the accurate construction of consensus genetic maps / Yonghui Wu, Timothy J. Close, and Stefano Lonardi. Efficient haplotype inference from pedigrees with missing data using linear systems with disjoint-set data structures / Xin Li and Jing Li -- Computational methods. Knowledge representation and data mining for biological imaging / Wamiq M. Ahmed. Fast multisegment Alignments for temporal expression profiles / Adam A. Smith and Mark Craven. Graph wavelet alignment kernels for drug virtual screening / Aaron Smalter, Jun Huan, and Gerald Lushington. |
| ctrlnum | (OCoLC)780417046 |
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| discipline | Biologie |
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An ORFome assembly approach to metagenomics sequences analysis / Yuzhen Ye and Haixu Tang. A probabilistic coding based quantum genetic algorithm for multiple sequence alignment / Hongwei Huo [and others]. Scalable computation of kinship and identity coefficients on large pedigrees / En Cheng, Brendan Elliott, and Z. Meral Ozsoyoglu. Voting algorithms for the motif finding problem / Xiaowen Liu, Bin Ma, and Lusheng Wang -- Proteomics. A max-flow based approach to the identification of protein complexes using protein interaction and microarray data / Jianxing Feng, Rui Jiang, and Tao Jiang. MSDash: mass spectrometry database and search / Zhan Wu, Gilles Lajoie, and Bin Ma. Estimating support for protein-protein interaction data with applications to function prediction / Erliang Zeng [and others]. GaborLocal: peak detection in mass spectrum by gabor filters and Gaussian local maxima / Nha Nguyen [and others] -- Structural bioinformatics. Optimizing Bayes error for protein structure model selection by stability mutagenesis / Xiaoduan Ye, Alan M. Friedman, and Chris Bailey-Kellogg. Feedback algorithm and web-server for protein structure alignment / Zhiyu Zhao [and others]. Predicting flexible length linear B-cell epitopes / Yasser EL-Manzalawy, Drena Dobbs, and Vasant Honavar. Fast and accurate multi-class protein fold recognition with spatial sample kernels / Pavel Kuksa, Pai-Hsi Huang, and Vladimir Pavlovic. Designing secondary structure profiles for fast ncRNA identification / Yanni Sun and Jeremy Buhler. Matching of structural motifs using hashing on residue labels and geometric filtering for protein function prediction / Mark Moll and Lydia E. Kavraki. A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns / Jianyang (Michael) Zeng [and others]. Iterative non-sequential protein structural alignment / Saeed Salem and Mohammed J. Zaki. Combining sequence and structural profiles for protein solvent accessibility prediction / Rajkumar Bondugula and Dong Xu. Extensive exploration of conformational space improves Rosetta results for short protein domains / Yaohang Li [and others]. Improving homology models for protein-ligand binding sites / Chris Kauffman, Huzefa Rangwala, and George Karypis -- Pathways, networks, and biological systems. Using relative importance methods to model high-throughput gene perturbation screens / Ying Jin [and others]. Consistent alignment of metabolic pathways without abstraction / Ferhat Ay, Tamer Kahveci, and Valerie de Crâecy-Lagard. Detecting pathways transcriptionally correlated with clinical parameters / Igor Ulitsky and Ron Shamir -- Computational genomics. The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid / Chunfang Zheng [and others]. Error tolerant sibship reconstruction in wild populations / Saad I. 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| genre | Conference papers and proceedings fast |
| genre_facet | Conference papers and proceedings |
| id | ZDB-4-EBA-ocn780417046 |
| illustrated | Illustrated |
| indexdate | 2025-04-11T08:37:37Z |
| institution | BVB |
| institution_GND | http://id.loc.gov/authorities/names/no2001005546 http://id.loc.gov/authorities/names/nb2006023686 |
| isbn | 9781848162648 1848162642 1848162634 9781848162631 |
| language | English |
| lccn | 2009417062 |
| oclc_num | 780417046 |
| open_access_boolean | |
| owner | MAIN DE-862 DE-BY-FWS DE-863 DE-BY-FWS |
| owner_facet | MAIN DE-862 DE-BY-FWS DE-863 DE-BY-FWS |
| physical | 1 online resource (xiii, 340 pages) : illustrations (some color) |
| psigel | ZDB-4-EBA FWS_PDA_EBA ZDB-4-EBA |
| publishDate | 2008 |
| publishDateSearch | 2008 |
| publishDateSort | 2008 |
| publisher | Imperial College Press ; Distributed by World Scientific Pub. Co., |
| record_format | marc |
| spelling | Computational systems bioinformatics : CSB 2008 conference proceedings, volume 7 : Stanford University, USA, 26-29 August 2008 / editors, Peter Markstein, Ying Xu. London : Imperial College Press ; Singapore : Distributed by World Scientific Pub. Co., ©2008. 1 online resource (xiii, 340 pages) : illustrations (some color) text txt rdacontent computer c rdamedia online resource cr rdacarrier Includes bibliographical references and author index. Genomics. An ORFome assembly approach to metagenomics sequences analysis / Yuzhen Ye and Haixu Tang. A probabilistic coding based quantum genetic algorithm for multiple sequence alignment / Hongwei Huo [and others]. Scalable computation of kinship and identity coefficients on large pedigrees / En Cheng, Brendan Elliott, and Z. Meral Ozsoyoglu. Voting algorithms for the motif finding problem / Xiaowen Liu, Bin Ma, and Lusheng Wang -- Proteomics. A max-flow based approach to the identification of protein complexes using protein interaction and microarray data / Jianxing Feng, Rui Jiang, and Tao Jiang. MSDash: mass spectrometry database and search / Zhan Wu, Gilles Lajoie, and Bin Ma. Estimating support for protein-protein interaction data with applications to function prediction / Erliang Zeng [and others]. GaborLocal: peak detection in mass spectrum by gabor filters and Gaussian local maxima / Nha Nguyen [and others] -- Structural bioinformatics. Optimizing Bayes error for protein structure model selection by stability mutagenesis / Xiaoduan Ye, Alan M. Friedman, and Chris Bailey-Kellogg. Feedback algorithm and web-server for protein structure alignment / Zhiyu Zhao [and others]. Predicting flexible length linear B-cell epitopes / Yasser EL-Manzalawy, Drena Dobbs, and Vasant Honavar. Fast and accurate multi-class protein fold recognition with spatial sample kernels / Pavel Kuksa, Pai-Hsi Huang, and Vladimir Pavlovic. Designing secondary structure profiles for fast ncRNA identification / Yanni Sun and Jeremy Buhler. Matching of structural motifs using hashing on residue labels and geometric filtering for protein function prediction / Mark Moll and Lydia E. Kavraki. A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns / Jianyang (Michael) Zeng [and others]. Iterative non-sequential protein structural alignment / Saeed Salem and Mohammed J. Zaki. Combining sequence and structural profiles for protein solvent accessibility prediction / Rajkumar Bondugula and Dong Xu. Extensive exploration of conformational space improves Rosetta results for short protein domains / Yaohang Li [and others]. Improving homology models for protein-ligand binding sites / Chris Kauffman, Huzefa Rangwala, and George Karypis -- Pathways, networks, and biological systems. Using relative importance methods to model high-throughput gene perturbation screens / Ying Jin [and others]. Consistent alignment of metabolic pathways without abstraction / Ferhat Ay, Tamer Kahveci, and Valerie de Crâecy-Lagard. Detecting pathways transcriptionally correlated with clinical parameters / Igor Ulitsky and Ron Shamir -- Computational genomics. The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid / Chunfang Zheng [and others]. Error tolerant sibship reconstruction in wild populations / Saad I. Sheikh [and others]. On the accurate construction of consensus genetic maps / Yonghui Wu, Timothy J. Close, and Stefano Lonardi. Efficient haplotype inference from pedigrees with missing data using linear systems with disjoint-set data structures / Xin Li and Jing Li -- Computational methods. Knowledge representation and data mining for biological imaging / Wamiq M. Ahmed. Fast multisegment Alignments for temporal expression profiles / Adam A. Smith and Mark Craven. Graph wavelet alignment kernels for drug virtual screening / Aaron Smalter, Jun Huan, and Gerald Lushington. This proceedings volume contains 29 papers covering many of the latest developments in the fast-growing field of bioinformatics. The contributions span a wide range of topics, including computational genomics and genetics, protein function and computational proteomics, the transcriptome, structural bioinformatics, microarray data analysis, motif identification, biological pathways and systems, and biomedical applications. The papers not only cover theoretical aspects of bioinformatics but also delve into the application of new methods, with input from computation, engineering and biology disciplines. This multidisciplinary approach to bioinformatics gives these proceedings a unique viewpoint of the field. Bioinformatics Congresses. Computational biology Congresses. Bio-informatique Congrès. NATURE Reference. bisacsh SCIENCE Life Sciences Biology. bisacsh SCIENCE Life Sciences General. bisacsh Bioinformatics fast Computational biology fast Computational biology / bioinformatics. thema Genetics (non-medical). thema Science. ukslc Conference papers and proceedings fast Markstein, Peter. Xu, Ying, 1960- https://id.oclc.org/worldcat/entity/E39PCjFYcHcxtgCf7GqKbwvd73 http://id.loc.gov/authorities/names/no2002057065 World Scientific (Firm) https://id.oclc.org/worldcat/entity/E39QH7JmqWhbRHPg7KQwb8pcqF http://id.loc.gov/authorities/names/no2001005546 Life Sciences Society. https://id.oclc.org/worldcat/entity/E39QH7JmpmXr4mCccXc6fwyRCF http://id.loc.gov/authorities/names/nb2006023686 Hardback 9781848162631 |
| spellingShingle | Computational systems bioinformatics : CSB 2008 conference proceedings, volume 7 : Stanford University, USA, 26-29 August 2008 / Genomics. An ORFome assembly approach to metagenomics sequences analysis / Yuzhen Ye and Haixu Tang. A probabilistic coding based quantum genetic algorithm for multiple sequence alignment / Hongwei Huo [and others]. Scalable computation of kinship and identity coefficients on large pedigrees / En Cheng, Brendan Elliott, and Z. Meral Ozsoyoglu. Voting algorithms for the motif finding problem / Xiaowen Liu, Bin Ma, and Lusheng Wang -- Proteomics. A max-flow based approach to the identification of protein complexes using protein interaction and microarray data / Jianxing Feng, Rui Jiang, and Tao Jiang. MSDash: mass spectrometry database and search / Zhan Wu, Gilles Lajoie, and Bin Ma. Estimating support for protein-protein interaction data with applications to function prediction / Erliang Zeng [and others]. GaborLocal: peak detection in mass spectrum by gabor filters and Gaussian local maxima / Nha Nguyen [and others] -- Structural bioinformatics. Optimizing Bayes error for protein structure model selection by stability mutagenesis / Xiaoduan Ye, Alan M. Friedman, and Chris Bailey-Kellogg. Feedback algorithm and web-server for protein structure alignment / Zhiyu Zhao [and others]. Predicting flexible length linear B-cell epitopes / Yasser EL-Manzalawy, Drena Dobbs, and Vasant Honavar. Fast and accurate multi-class protein fold recognition with spatial sample kernels / Pavel Kuksa, Pai-Hsi Huang, and Vladimir Pavlovic. Designing secondary structure profiles for fast ncRNA identification / Yanni Sun and Jeremy Buhler. Matching of structural motifs using hashing on residue labels and geometric filtering for protein function prediction / Mark Moll and Lydia E. Kavraki. A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns / Jianyang (Michael) Zeng [and others]. Iterative non-sequential protein structural alignment / Saeed Salem and Mohammed J. Zaki. Combining sequence and structural profiles for protein solvent accessibility prediction / Rajkumar Bondugula and Dong Xu. Extensive exploration of conformational space improves Rosetta results for short protein domains / Yaohang Li [and others]. Improving homology models for protein-ligand binding sites / Chris Kauffman, Huzefa Rangwala, and George Karypis -- Pathways, networks, and biological systems. Using relative importance methods to model high-throughput gene perturbation screens / Ying Jin [and others]. Consistent alignment of metabolic pathways without abstraction / Ferhat Ay, Tamer Kahveci, and Valerie de Crâecy-Lagard. Detecting pathways transcriptionally correlated with clinical parameters / Igor Ulitsky and Ron Shamir -- Computational genomics. The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid / Chunfang Zheng [and others]. Error tolerant sibship reconstruction in wild populations / Saad I. Sheikh [and others]. On the accurate construction of consensus genetic maps / Yonghui Wu, Timothy J. Close, and Stefano Lonardi. Efficient haplotype inference from pedigrees with missing data using linear systems with disjoint-set data structures / Xin Li and Jing Li -- Computational methods. Knowledge representation and data mining for biological imaging / Wamiq M. Ahmed. Fast multisegment Alignments for temporal expression profiles / Adam A. Smith and Mark Craven. Graph wavelet alignment kernels for drug virtual screening / Aaron Smalter, Jun Huan, and Gerald Lushington. Bioinformatics Congresses. Computational biology Congresses. Bio-informatique Congrès. NATURE Reference. bisacsh SCIENCE Life Sciences Biology. bisacsh SCIENCE Life Sciences General. bisacsh Bioinformatics fast Computational biology fast Computational biology / bioinformatics. thema Genetics (non-medical). thema Science. ukslc |
| title | Computational systems bioinformatics : CSB 2008 conference proceedings, volume 7 : Stanford University, USA, 26-29 August 2008 / |
| title_auth | Computational systems bioinformatics : CSB 2008 conference proceedings, volume 7 : Stanford University, USA, 26-29 August 2008 / |
| title_exact_search | Computational systems bioinformatics : CSB 2008 conference proceedings, volume 7 : Stanford University, USA, 26-29 August 2008 / |
| title_full | Computational systems bioinformatics : CSB 2008 conference proceedings, volume 7 : Stanford University, USA, 26-29 August 2008 / editors, Peter Markstein, Ying Xu. |
| title_fullStr | Computational systems bioinformatics : CSB 2008 conference proceedings, volume 7 : Stanford University, USA, 26-29 August 2008 / editors, Peter Markstein, Ying Xu. |
| title_full_unstemmed | Computational systems bioinformatics : CSB 2008 conference proceedings, volume 7 : Stanford University, USA, 26-29 August 2008 / editors, Peter Markstein, Ying Xu. |
| title_short | Computational systems bioinformatics : |
| title_sort | computational systems bioinformatics csb 2008 conference proceedings volume 7 stanford university usa 26 29 august 2008 |
| title_sub | CSB 2008 conference proceedings, volume 7 : Stanford University, USA, 26-29 August 2008 / |
| topic | Bioinformatics Congresses. Computational biology Congresses. Bio-informatique Congrès. NATURE Reference. bisacsh SCIENCE Life Sciences Biology. bisacsh SCIENCE Life Sciences General. bisacsh Bioinformatics fast Computational biology fast Computational biology / bioinformatics. thema Genetics (non-medical). thema Science. ukslc |
| topic_facet | Bioinformatics Congresses. Computational biology Congresses. Bio-informatique Congrès. NATURE Reference. SCIENCE Life Sciences Biology. SCIENCE Life Sciences General. Bioinformatics Computational biology Computational biology / bioinformatics. Genetics (non-medical). Science. Conference papers and proceedings |
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